Wall clock time and date at job start Tue Mar 31 2020 13:20:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.53005 * 109.47420 * 2 1
4 4 C 1.52995 * 109.47420 * 180.02562 * 3 2 1
5 5 N 1.46507 * 109.46828 * 179.97438 * 4 3 2
6 6 O 1.41600 * 119.99881 * 255.00271 * 5 4 3
7 7 C 1.42904 * 113.99507 * 269.99877 * 6 5 4
8 8 C 1.34773 * 119.99589 * 75.00221 * 5 4 3
9 9 O 1.21715 * 120.00204 * 0.02562 * 8 5 4
10 10 C 1.46260 * 119.99717 * 180.27186 * 8 5 4
11 11 C 1.35021 * 119.99961 * 172.94485 * 10 8 5
12 12 C 1.46960 * 120.00041 * 348.68449 * 11 10 8
13 13 C 1.40028 * 120.10009 * 316.39911 * 12 11 10
14 14 C 1.37594 * 119.89791 * 179.76287 * 13 12 11
15 15 C 1.39181 * 120.10136 * 0.51574 * 14 13 12
16 16 O 1.35570 * 119.89914 * 179.75998 * 15 14 13
17 17 C 1.34783 * 116.99886 * 174.33499 * 16 15 14
18 18 H 1.07998 * 119.99829 * 5.06153 * 17 16 15
19 19 C 1.38721 * 119.99912 * 185.05607 * 17 16 15
20 20 N 1.31504 * 120.00035 * 0.02562 * 19 17 16
21 21 Si 1.86799 * 119.99732 * 180.02562 * 19 17 16
22 22 H 1.48502 * 109.47040 * 60.00415 * 21 19 17
23 23 H 1.48501 * 109.47112 * 180.02562 * 21 19 17
24 24 H 1.48501 * 109.47374 * 300.00308 * 21 19 17
25 25 C 1.39177 * 120.19912 * 359.73891 * 15 14 13
26 26 C 1.37596 * 120.10326 * 359.97438 * 25 15 14
27 27 H 1.08995 * 109.47363 * 60.00283 * 1 2 3
28 28 H 1.09005 * 109.47135 * 179.97438 * 1 2 3
29 29 H 1.08998 * 109.47190 * 299.99707 * 1 2 3
30 30 H 1.08998 * 109.47190 * 240.00293 * 2 1 3
31 31 H 1.09002 * 109.47578 * 120.00018 * 2 1 3
32 32 H 1.08998 * 109.46700 * 59.99993 * 3 2 1
33 33 H 1.09002 * 109.46760 * 300.00519 * 3 2 1
34 34 H 1.09005 * 109.46798 * 60.00184 * 4 3 2
35 35 H 1.08991 * 109.47165 * 300.00182 * 4 3 2
36 36 H 1.09008 * 109.46299 * 180.02562 * 7 6 5
37 37 H 1.08993 * 109.47504 * 300.00274 * 7 6 5
38 38 H 1.09003 * 109.47067 * 60.00836 * 7 6 5
39 39 H 1.08004 * 119.99728 * 352.94240 * 10 8 5
40 40 H 1.07996 * 120.00056 * 168.69055 * 11 10 8
41 41 H 1.08007 * 120.05004 * 0.02562 * 13 12 11
42 42 H 1.08006 * 119.95302 * 180.22971 * 14 13 12
43 43 H 0.96998 * 119.99874 * 179.97438 * 20 19 17
44 44 H 1.08007 * 119.94663 * 179.97438 * 25 15 14
45 45 H 1.08004 * 120.04756 * 180.02562 * 26 25 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5700 1.4425 -0.0006
5 7 4.0583 2.8238 -0.0013
6 8 4.5929 3.3852 -1.1862
7 6 6.0015 3.1954 -1.3350
8 6 3.9985 3.5601 1.1260
9 8 3.5394 3.0773 2.1446
10 6 4.4805 4.9410 1.1239
11 6 4.2917 5.7236 2.2078
12 6 3.3946 5.2828 3.2851
13 6 2.1561 4.7070 2.9761
14 6 1.3215 4.2913 3.9880
15 6 1.7019 4.4522 5.3171
16 8 0.8742 4.0456 6.3109
17 6 1.3478 4.1204 7.5706
18 1 2.3128 4.5670 7.7590
19 6 0.5954 3.6238 8.6250
20 7 -0.5795 3.0797 8.3954
21 14 1.2514 3.7282 10.3709
22 1 1.4776 5.1511 10.7304
23 1 0.2649 3.1314 11.3068
24 1 2.5335 2.9844 10.4633
25 6 2.9296 5.0288 5.6290
26 6 3.7732 5.4421 4.6237
27 1 -0.3634 0.5138 -0.8900
28 1 -0.3634 -1.0277 -0.0005
29 1 -0.3633 0.5138 0.8900
30 1 1.8933 -0.5138 -0.8900
31 1 1.8934 -0.5138 0.8900
32 1 1.6767 1.9563 0.8900
33 1 1.6766 1.9564 -0.8900
34 1 3.9329 0.9288 -0.8909
35 1 3.9337 0.9286 0.8890
36 1 6.3334 3.6544 -2.2664
37 1 6.5212 3.6589 -0.4965
38 1 6.2242 2.1286 -1.3557
39 1 4.9874 5.3346 0.2552
40 1 4.7999 6.6735 2.2831
41 1 1.8583 4.5855 1.9451
42 1 0.3676 3.8437 3.7506
43 1 -1.1054 2.7321 9.1327
44 1 3.2205 5.1521 6.6618
45 1 4.7259 5.8891 4.8667
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000493528418.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:20:53
Heat of formation + Delta-G solvation = -29.441843 kcal
Electronic energy + Delta-G solvation = -26743.075704 eV
Core-core repulsion = 22921.734716 eV
Total energy + Delta-G solvation = -3821.340987 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-41.26197 -40.51762 -38.73174 -37.89212 -36.58935 -34.62563 -33.93373 -33.55834
-31.83216 -30.40510 -29.23025 -27.52764 -27.28389 -25.61390 -23.78818 -23.34402
-22.30959 -21.86606 -20.69765 -19.81609 -19.01152 -18.41536 -17.64960 -16.88942
-16.52605 -16.39401 -16.28726 -16.03255 -15.64422 -15.45648 -15.24522 -14.98370
-14.76237 -14.65112 -14.51438 -14.27817 -14.05104 -13.79924 -13.57034 -13.52115
-13.04741 -12.98048 -12.64517 -12.40316 -12.37931 -12.27783 -12.17306 -12.12827
-11.99781 -11.60351 -11.48235 -11.24223 -10.94289 -10.65490 -10.42479 -10.03319
-9.58438 -8.58482 -8.48310 -6.15661 -0.08330 0.68682 0.96728 1.07985
1.33817 1.46862 1.50962 2.17430 2.30318 2.86686 3.16320 3.20344
3.51642 3.90122 3.94674 3.98315 4.08135 4.14119 4.15464 4.26387
4.33801 4.43166 4.49332 4.51095 4.53825 4.57763 4.66813 4.75543
4.79460 4.84413 4.90424 4.99421 5.04176 5.07881 5.21205 5.23105
5.23778 5.31762 5.39682 5.42712 5.49068 5.66112 5.71519 5.82011
6.02129 6.23035 6.51279 6.95448 7.17349 7.77231 8.74722
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.013816 B = 0.003324 C = 0.002829
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2026.139573 B = 8420.922489 C = 9896.352470
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C -0.115 4.115
3 C -0.129 4.129
4 C 0.122 3.878
5 N -0.479 5.479
6 O -0.150 6.150
7 C -0.014 4.014
8 C 0.537 3.463
9 O -0.538 6.538
10 C -0.236 4.236
11 C 0.015 3.985
12 C -0.164 4.164
13 C 0.013 3.987
14 C -0.218 4.218
15 C 0.130 3.870
16 O -0.230 6.230
17 C -0.417 4.417
18 H 0.104 0.896
19 C -0.023 4.023
20 N -0.921 5.921
21 Si 1.021 2.979
22 H -0.254 1.254
23 H -0.271 1.271
24 H -0.258 1.258
25 C -0.258 4.258
26 C -0.043 4.043
27 H 0.062 0.938
28 H 0.065 0.935
29 H 0.034 0.966
30 H 0.086 0.914
31 H 0.055 0.945
32 H 0.039 0.961
33 H 0.070 0.930
34 H 0.112 0.888
35 H 0.068 0.932
36 H 0.135 0.865
37 H 0.055 0.945
38 H 0.056 0.944
39 H 0.162 0.838
40 H 0.172 0.828
41 H 0.114 0.886
42 H 0.100 0.900
43 H 0.274 0.726
44 H 0.122 0.878
45 H 0.150 0.850
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.636 0.494 -21.366 25.903
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.153 4.153
3 C -0.168 4.168
4 C 0.002 3.998
5 N -0.258 5.258
6 O -0.154 6.154
7 C -0.111 4.111
8 C 0.331 3.669
9 O -0.417 6.417
10 C -0.256 4.256
11 C -0.004 4.004
12 C -0.165 4.165
13 C -0.005 4.005
14 C -0.238 4.238
15 C 0.079 3.921
16 O -0.136 6.136
17 C -0.493 4.493
18 H 0.121 0.879
19 C -0.221 4.221
20 N -0.558 5.558
21 Si 0.840 3.160
22 H -0.178 1.178
23 H -0.195 1.195
24 H -0.182 1.182
25 C -0.277 4.277
26 C -0.061 4.061
27 H 0.081 0.919
28 H 0.084 0.916
29 H 0.053 0.947
30 H 0.104 0.896
31 H 0.073 0.927
32 H 0.058 0.942
33 H 0.089 0.911
34 H 0.130 0.870
35 H 0.087 0.913
36 H 0.152 0.848
37 H 0.074 0.926
38 H 0.075 0.925
39 H 0.179 0.821
40 H 0.189 0.811
41 H 0.132 0.868
42 H 0.118 0.882
43 H 0.083 0.917
44 H 0.140 0.860
45 H 0.168 0.832
Dipole moment (debyes) X Y Z Total
from point charges 13.880 0.132 -20.884 25.076
hybrid contribution -0.089 -0.400 0.913 1.001
sum 13.791 -0.268 -19.970 24.271
Atomic orbital electron populations
1.21766 0.95758 1.02148 1.01422 1.21412 0.96114 0.95165 1.02647
1.21886 0.94938 0.98261 1.01716 1.21756 0.94420 0.80002 1.03632
1.50238 1.58919 1.13256 1.03378 1.90613 1.24490 1.75070 1.25237
1.23645 0.80673 1.02548 1.04239 1.19158 0.78130 0.88485 0.81101
1.91050 1.46454 1.73493 1.30721 1.22955 1.08904 0.92441 1.01322
1.22610 0.90067 0.98464 0.89302 1.18845 0.96075 1.07948 0.93621
1.20633 0.92360 0.91031 0.96478 1.20145 1.02455 1.10929 0.90233
1.19997 0.90360 0.92529 0.89252 1.83878 1.39738 1.74737 1.15243
1.21867 1.05602 1.41502 0.80315 0.87917 1.26672 0.95644 0.95072
1.04668 1.70169 1.12621 1.38530 1.34526 0.84624 0.78187 0.79792
0.73435 1.17790 1.19496 1.18227 1.21101 0.96253 1.09708 1.00607
1.21174 0.98299 0.95696 0.90944 0.91928 0.91557 0.94657 0.89555
0.92668 0.94224 0.91130 0.87011 0.91333 0.84765 0.92631 0.92497
0.82080 0.81094 0.86770 0.88176 0.91744 0.86035 0.83213
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.20 9.91 71.98 0.71 -2.49 16
2 C -0.12 -2.31 5.93 30.59 0.18 -2.13 16
3 C -0.13 -3.06 5.34 30.59 0.16 -2.90 16
4 C 0.12 2.63 5.66 86.38 0.49 3.12 16
5 N -0.48 -11.26 3.02 -467.50 -1.41 -12.67 16
6 O -0.15 -2.72 10.50 -38.78 -0.41 -3.13 16
7 C -0.01 -0.15 11.29 113.37 1.28 1.13 16
8 C 0.54 15.57 6.51 86.33 0.56 16.13 16
9 O -0.54 -20.57 11.26 -4.40 -0.05 -20.62 16
10 C -0.24 -5.39 9.46 23.62 0.22 -5.16 16
11 C 0.01 0.36 9.80 23.82 0.23 0.59 16
12 C -0.16 -5.76 4.54 -20.13 -0.09 -5.85 16
13 C 0.01 0.54 6.60 22.55 0.15 0.69 16
14 C -0.22 -10.72 9.97 22.34 0.22 -10.50 16
15 C 0.13 7.05 6.66 22.72 0.15 7.20 16
16 O -0.23 -14.72 9.74 -20.28 -0.20 -14.92 16
17 C -0.42 -25.39 9.48 67.94 0.64 -24.75 16
18 H 0.10 5.72 5.18 -2.91 -0.02 5.70 16
19 C -0.02 -1.35 5.49 84.86 0.47 -0.89 16
20 N -0.92 -58.43 13.67 21.62 0.30 -58.13 16
21 Si 1.02 44.06 29.55 68.60 2.03 46.09 16
22 H -0.25 -10.17 7.11 99.48 0.71 -9.47 16
23 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16
24 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16
25 C -0.26 -12.05 9.14 22.34 0.20 -11.85 16
26 C -0.04 -1.60 9.78 22.55 0.22 -1.38 16
27 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16
28 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16
29 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16
30 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16
31 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16
32 H 0.04 1.25 7.34 -2.39 -0.02 1.23 16
33 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16
34 H 0.11 1.67 8.14 -2.38 -0.02 1.65 16
35 H 0.07 1.68 7.90 -2.39 -0.02 1.66 16
36 H 0.13 0.63 8.14 -2.38 -0.02 0.61 16
37 H 0.05 0.61 8.11 -2.39 -0.02 0.59 16
38 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16
39 H 0.16 2.55 7.35 -2.91 -0.02 2.53 16
40 H 0.17 2.62 8.06 -2.91 -0.02 2.59 16
41 H 0.11 4.26 7.02 -2.91 -0.02 4.24 16
42 H 0.10 4.99 8.06 -2.91 -0.02 4.97 16
43 H 0.27 15.86 8.31 -92.71 -0.77 15.08 16
44 H 0.12 5.66 5.62 -2.91 -0.02 5.65 16
45 H 0.15 4.22 8.06 -2.91 -0.02 4.19 16
Total: -1.00 -80.74 378.92 7.05 -73.69
By element:
Atomic # 1 Polarization: 27.73 SS G_CDS: 0.98 Total: 28.70 kcal
Atomic # 6 Polarization: -44.83 SS G_CDS: 5.81 Total: -39.02 kcal
Atomic # 7 Polarization: -69.69 SS G_CDS: -1.12 Total: -70.80 kcal
Atomic # 8 Polarization: -38.01 SS G_CDS: -0.65 Total: -38.67 kcal
Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal
Total: -80.74 7.05 -73.69 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000493528418.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 44.251 kcal
(2) G-P(sol) polarization free energy of solvation -80.740 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.489 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.047 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.693 kcal
(6) G-S(sol) free energy of system = (1) + (5) -29.442 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds