Wall clock time and date at job start Tue Mar 31 2020 13:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35824 * 117.00216 * 2 1 4 4 C 1.38864 * 119.89842 * 359.97438 * 3 2 1 5 5 C 1.37756 * 120.17091 * 179.97438 * 4 3 2 6 6 C 1.39948 * 119.97468 * 0.02562 * 5 4 3 7 7 C 1.47000 * 120.09277 * 180.02562 * 6 5 4 8 8 C 1.34977 * 120.00170 * 0.02562 * 7 6 5 9 9 C 1.46261 * 120.00369 * 180.02562 * 8 7 6 10 10 O 1.21727 * 119.99543 * 359.97438 * 9 8 7 11 11 N 1.34769 * 120.00169 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99817 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47290 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47312 * 300.00278 * 13 12 11 15 15 C 1.53004 * 109.47135 * 59.99808 * 13 12 11 16 16 C 1.50692 * 109.47411 * 179.97438 * 13 12 11 17 17 H 1.07995 * 120.00337 * 1.34547 * 16 13 12 18 18 C 1.37880 * 120.00053 * 181.34467 * 16 13 12 19 19 N 1.31518 * 120.00231 * 193.97758 * 18 16 13 20 20 Si 1.86807 * 119.99982 * 13.98144 * 18 16 13 21 21 H 1.48491 * 109.47016 * 84.54499 * 20 18 16 22 22 H 1.48502 * 109.46820 * 204.54832 * 20 18 16 23 23 H 1.48496 * 109.46932 * 324.54675 * 20 18 16 24 24 C 1.39964 * 119.81462 * 0.27534 * 6 5 4 25 25 C 1.38100 * 119.82355 * 359.46986 * 24 6 5 26 26 O 1.35990 * 119.98952 * 180.25484 * 25 24 6 27 27 H 1.08993 * 109.47119 * 60.00071 * 1 2 3 28 28 H 1.08997 * 109.46738 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46910 * 299.99909 * 1 2 3 30 30 H 1.07997 * 119.91753 * 0.02915 * 4 3 2 31 31 H 1.07990 * 120.01322 * 180.02562 * 5 4 3 32 32 H 1.08000 * 120.00060 * 180.02562 * 7 6 5 33 33 H 1.08005 * 119.99837 * 359.97438 * 8 7 6 34 34 H 0.97001 * 119.99913 * 359.97438 * 11 9 8 35 35 H 1.09000 * 109.47485 * 299.99489 * 12 11 9 36 36 H 1.08999 * 109.47495 * 60.00493 * 12 11 9 37 37 H 1.09007 * 109.47090 * 69.36075 * 14 13 12 38 38 H 1.08994 * 109.47770 * 189.36607 * 14 13 12 39 39 H 1.09003 * 109.47116 * 309.36800 * 14 13 12 40 40 H 1.08998 * 109.46764 * 60.00330 * 15 13 12 41 41 H 1.09000 * 109.47537 * 180.02562 * 15 13 12 42 42 H 1.08996 * 109.47140 * 300.00498 * 15 13 12 43 43 H 0.97001 * 120.00247 * 180.02562 * 19 18 16 44 44 H 1.08000 * 120.09177 * 179.69777 * 24 6 5 45 45 H 0.96704 * 113.99684 * 270.25394 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2102 0.0000 4 6 1.2873 2.3735 -0.0005 5 6 1.9069 3.6038 0.0000 6 6 3.3042 3.6831 0.0005 7 6 3.9681 4.9946 0.0017 8 6 3.2300 6.1247 0.0027 9 6 3.8905 7.4297 0.0033 10 8 5.1059 7.4965 0.0033 11 7 3.1534 8.5580 0.0048 12 6 3.8151 9.8650 0.0060 13 6 2.7585 10.9716 0.0070 14 6 1.8845 10.8434 -1.2422 15 6 1.8846 10.8412 1.2562 16 6 3.4390 12.3160 0.0088 17 1 4.5171 12.3756 -0.0128 18 6 2.6853 13.4702 0.0380 19 7 3.2453 14.6285 -0.2351 20 14 0.8687 13.3889 0.4656 21 1 0.7064 13.4036 1.9415 22 1 0.1692 14.5602 -0.1211 23 1 0.2864 12.1383 -0.0840 24 6 4.0677 2.5100 -0.0053 25 6 3.4383 1.2808 -0.0005 26 8 4.1768 0.1390 -0.0009 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2090 2.3135 -0.0005 31 1 1.3147 4.5069 0.0000 32 1 5.0464 5.0540 0.0017 33 1 2.1515 6.0653 0.0023 34 1 2.1849 8.5046 0.0052 35 1 4.4380 9.9562 0.8958 36 1 4.4372 9.9582 -0.8842 37 1 1.2668 9.9488 -1.1633 38 1 1.2438 11.7208 -1.3291 39 1 2.5204 10.7692 -2.1245 40 1 2.5072 10.9325 2.1462 41 1 1.1316 11.6292 1.2568 42 1 1.3924 9.8687 1.2554 43 1 2.7152 15.4405 -0.2142 44 1 5.1462 2.5660 -0.0098 45 1 4.3905 -0.1909 -0.8845 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493858237.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:18 Heat of formation + Delta-G solvation = -86.900574 kcal Electronic energy + Delta-G solvation = -25594.637216 eV Core-core repulsion = 21770.804632 eV Total energy + Delta-G solvation = -3823.832585 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.43150 -40.76150 -38.95045 -38.44945 -37.83343 -34.96917 -34.29060 -33.39005 -31.43182 -30.21463 -28.33328 -27.99623 -27.47058 -26.92186 -24.70486 -23.62064 -22.24192 -21.02663 -20.54651 -19.48204 -18.63719 -18.45980 -18.01397 -17.36579 -17.01941 -16.84216 -16.41209 -16.24976 -16.04531 -15.66539 -15.33899 -14.98852 -14.93247 -14.71609 -14.63903 -14.26529 -14.00337 -13.73691 -13.67066 -13.57235 -13.14431 -12.93704 -12.71328 -12.38545 -12.33956 -12.19161 -12.11796 -11.94207 -11.75146 -11.62394 -11.11165 -10.92431 -10.82580 -10.60775 -10.37721 -9.99986 -9.88598 -8.81496 -8.29190 -6.31033 -0.46699 0.20161 0.94451 1.37483 1.39108 1.52343 2.25276 2.31011 2.35896 2.37080 2.75024 3.06765 3.18425 3.66537 3.74072 4.01284 4.06851 4.14136 4.20126 4.28959 4.33977 4.40376 4.40668 4.43244 4.56741 4.73781 4.76932 4.78398 4.84739 4.87882 4.95644 5.02601 5.04844 5.07889 5.19042 5.20332 5.38678 5.44698 5.55767 5.59787 5.60677 5.73822 5.81382 6.23971 6.31299 6.69026 6.74781 6.84076 7.33183 7.35077 8.87998 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.026308 B = 0.002138 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.039401 B =13092.693823 C =13941.842683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.326 6.326 3 C 0.103 3.897 4 C -0.195 4.195 5 C -0.065 4.065 6 C -0.104 4.104 7 C -0.013 4.013 8 C -0.209 4.209 9 C 0.534 3.466 10 O -0.602 6.602 11 N -0.704 5.704 12 C 0.156 3.844 13 C 0.027 3.973 14 C -0.141 4.141 15 C -0.147 4.147 16 C -0.518 4.518 17 H 0.025 0.975 18 C 0.013 3.987 19 N -0.947 5.947 20 Si 0.947 3.053 21 H -0.282 1.282 22 H -0.316 1.316 23 H -0.200 1.200 24 C -0.089 4.089 25 C 0.056 3.944 26 O -0.500 6.500 27 H 0.071 0.929 28 H 0.117 0.883 29 H 0.067 0.933 30 H 0.163 0.837 31 H 0.159 0.841 32 H 0.122 0.878 33 H 0.165 0.835 34 H 0.414 0.586 35 H 0.041 0.959 36 H 0.039 0.961 37 H 0.069 0.931 38 H 0.045 0.955 39 H 0.039 0.961 40 H 0.045 0.955 41 H 0.036 0.964 42 H 0.077 0.923 43 H 0.264 0.736 44 H 0.147 0.853 45 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.674 -31.905 -1.016 33.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.240 6.240 3 C 0.057 3.943 4 C -0.213 4.213 5 C -0.082 4.082 6 C -0.104 4.104 7 C -0.033 4.033 8 C -0.229 4.229 9 C 0.325 3.675 10 O -0.486 6.486 11 N -0.355 5.355 12 C 0.032 3.968 13 C 0.026 3.974 14 C -0.198 4.198 15 C -0.204 4.204 16 C -0.556 4.556 17 H 0.043 0.957 18 C -0.184 4.184 19 N -0.586 5.586 20 Si 0.776 3.224 21 H -0.210 1.210 22 H -0.246 1.246 23 H -0.124 1.124 24 C -0.107 4.107 25 C 0.011 3.989 26 O -0.312 6.312 27 H 0.089 0.911 28 H 0.135 0.865 29 H 0.085 0.915 30 H 0.180 0.820 31 H 0.177 0.823 32 H 0.140 0.860 33 H 0.183 0.817 34 H 0.252 0.748 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.088 0.912 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.054 0.946 42 H 0.096 0.904 43 H 0.073 0.927 44 H 0.165 0.835 45 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -10.815 -31.809 -0.439 33.600 hybrid contribution -0.387 1.041 -0.261 1.141 sum -11.202 -30.768 -0.700 32.751 Atomic orbital electron populations 1.23430 0.76183 1.05766 1.02652 1.86093 1.23621 1.26301 1.87952 1.19900 0.91885 0.85747 0.96793 1.21398 1.01615 0.90858 1.07449 1.21560 0.93159 0.98662 0.94845 1.18769 0.93693 0.91747 1.06215 1.22240 0.99937 0.90606 0.90520 1.22911 1.01910 0.89891 1.08161 1.18941 0.86694 0.86031 0.75857 1.90789 1.16121 1.88640 1.53026 1.45924 1.10954 1.05153 1.73461 1.21028 0.95020 0.81263 0.99501 1.18664 0.92919 0.92115 0.93737 1.22222 0.99022 1.00877 0.97715 1.22298 0.98960 1.00620 0.98532 1.21037 0.93058 0.90538 1.50985 0.95653 1.25922 1.03815 0.94611 0.94083 1.70123 1.39363 0.99664 1.49478 0.86301 0.80076 0.77886 0.78128 1.20955 1.24586 1.12382 1.21608 1.01218 0.90134 0.97755 1.17748 0.86716 0.86704 1.07764 1.84857 1.72066 1.39167 1.35131 0.91054 0.86475 0.91480 0.81975 0.82342 0.86035 0.81731 0.74803 0.94096 0.94252 0.91185 0.93579 0.94179 0.93630 0.94620 0.90437 0.92712 0.83515 0.73830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.81 113.37 1.11 1.20 16 2 O -0.33 -4.97 10.27 -77.55 -0.80 -5.76 16 3 C 0.10 1.66 6.71 22.71 0.15 1.81 16 4 C -0.19 -2.35 9.01 22.31 0.20 -2.15 16 5 C -0.06 -0.84 9.40 22.57 0.21 -0.63 16 6 C -0.10 -1.76 5.87 -20.15 -0.12 -1.88 16 7 C -0.01 -0.27 9.45 23.82 0.23 -0.04 16 8 C -0.21 -4.34 9.40 23.61 0.22 -4.12 16 9 C 0.53 16.60 7.74 86.33 0.67 17.27 16 10 O -0.60 -24.59 16.23 -4.43 -0.07 -24.66 16 11 N -0.70 -21.17 5.00 -467.50 -2.34 -23.51 16 12 C 0.16 6.25 4.49 86.38 0.39 6.64 16 13 C 0.03 1.12 0.50 -52.93 -0.03 1.10 16 14 C -0.14 -5.21 7.53 71.98 0.54 -4.67 16 15 C -0.15 -5.38 7.52 71.98 0.54 -4.84 16 16 C -0.52 -28.64 8.62 25.60 0.22 -28.42 16 17 H 0.03 1.60 7.99 -2.91 -0.02 1.58 16 18 C 0.01 0.73 5.32 84.65 0.45 1.18 16 19 N -0.95 -58.92 13.96 21.45 0.30 -58.62 16 20 Si 0.95 42.29 22.79 68.60 1.56 43.86 16 21 H -0.28 -12.37 7.10 99.48 0.71 -11.67 16 22 H -0.32 -14.62 7.11 99.48 0.71 -13.91 16 23 H -0.20 -7.40 4.65 99.48 0.46 -6.94 16 24 C -0.09 -1.52 9.72 22.66 0.22 -1.30 16 25 C 0.06 0.99 6.71 22.53 0.15 1.14 16 26 O -0.50 -8.43 13.28 -79.41 -1.05 -9.48 16 27 H 0.07 0.26 7.65 -2.39 -0.02 0.24 16 28 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.07 0.31 7.65 -2.39 -0.02 0.29 16 30 H 0.16 1.01 6.27 -2.91 -0.02 1.00 16 31 H 0.16 1.25 6.15 -2.92 -0.02 1.23 16 32 H 0.12 2.85 7.52 -2.91 -0.02 2.83 16 33 H 0.17 2.05 6.06 -2.91 -0.02 2.03 16 34 H 0.41 9.39 6.24 -92.71 -0.58 8.81 16 35 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.07 1.92 7.13 -2.38 -0.02 1.91 16 38 H 0.05 1.80 4.30 -2.39 -0.01 1.79 16 39 H 0.04 1.52 8.12 -2.39 -0.02 1.50 16 40 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.04 1.35 2.25 -2.39 -0.01 1.35 16 42 H 0.08 2.10 6.86 -2.39 -0.02 2.08 16 43 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 44 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 45 H 0.40 3.10 9.06 -74.05 -0.67 2.43 16 Total: -1.00 -79.22 360.38 2.32 -76.90 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -0.45 Total: 18.98 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: 5.16 Total: -17.70 kcal Atomic # 7 Polarization: -80.09 SS G_CDS: -2.04 Total: -82.13 kcal Atomic # 8 Polarization: -37.99 SS G_CDS: -1.92 Total: -39.91 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 1.56 Total: 43.86 kcal Total: -79.22 2.32 -76.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493858237.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.999 kcal (2) G-P(sol) polarization free energy of solvation -79.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds