Wall clock time and date at job start Tue Mar 31 2020 12:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46643 * 2 1 4 4 C 1.53005 * 109.47203 * 240.00512 * 2 1 3 5 5 C 1.50703 * 109.47368 * 59.99393 * 4 2 1 6 6 H 1.08003 * 119.99840 * 0.02562 * 5 4 2 7 7 C 1.37870 * 119.99979 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00280 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00120 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.46831 * 60.00292 * 9 7 5 11 11 H 1.48494 * 109.47488 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47433 * 300.01153 * 9 7 5 13 13 C 1.52998 * 109.47303 * 120.00093 * 2 1 3 14 14 N 1.46501 * 109.46957 * 300.00127 * 13 2 1 15 15 S 1.65605 * 119.99654 * 164.99854 * 14 13 2 16 16 O 1.42098 * 104.27874 * 308.92934 * 15 14 13 17 17 O 1.42103 * 104.27415 * 181.07262 * 15 14 13 18 18 C 1.81400 * 104.44674 * 65.00061 * 15 14 13 19 19 C 1.53003 * 109.46741 * 179.97438 * 18 15 14 20 20 C 1.53004 * 109.46941 * 179.97438 * 19 18 15 21 21 H 1.09002 * 110.27448 * 54.30277 * 20 19 18 22 22 C 1.54945 * 110.39100 * 176.44869 * 20 19 18 23 23 C 1.55304 * 100.94045 * 155.40253 * 22 20 19 24 24 C 1.54376 * 102.25567 * 325.86882 * 23 22 20 25 25 O 1.43240 * 107.58930 * 21.35352 * 24 23 22 26 26 H 1.08995 * 109.47104 * 299.99646 * 1 2 3 27 27 H 1.08997 * 109.47008 * 60.00135 * 1 2 3 28 28 H 1.09004 * 109.46656 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47068 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47308 * 299.99681 * 3 2 1 31 31 H 1.08995 * 109.47082 * 60.00340 * 3 2 1 32 32 H 1.08996 * 109.47291 * 179.97438 * 4 2 1 33 33 H 1.09003 * 109.46853 * 299.99753 * 4 2 1 34 34 H 0.97001 * 120.00367 * 179.97438 * 8 7 5 35 35 H 1.08996 * 109.47110 * 180.02562 * 13 2 1 36 36 H 1.09003 * 109.47025 * 60.00079 * 13 2 1 37 37 H 0.96993 * 120.00098 * 345.00174 * 14 13 2 38 38 H 1.09005 * 109.47245 * 60.00271 * 18 15 14 39 39 H 1.08997 * 109.47395 * 299.99817 * 18 15 14 40 40 H 1.09005 * 109.47065 * 60.00655 * 19 18 15 41 41 H 1.08997 * 109.47461 * 300.00308 * 19 18 15 42 42 H 1.08997 * 111.12470 * 273.31972 * 22 20 19 43 43 H 1.08995 * 111.12619 * 37.48960 * 22 20 19 44 44 H 1.08998 * 110.85543 * 207.67443 * 23 22 20 45 45 H 1.09009 * 111.02412 * 84.13543 * 23 22 20 46 46 H 1.08999 * 109.83271 * 261.84174 * 24 23 22 47 47 H 1.08999 * 109.91049 * 140.90833 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4798 6 1 0.9170 0.8675 -2.3807 7 6 1.8712 -0.4814 -3.7320 8 7 2.6274 -1.5506 -3.8528 9 14 1.2490 0.3995 -5.2572 10 1 1.7441 1.7996 -5.2566 11 1 1.7440 -0.3005 -6.4697 12 1 -0.2360 0.3997 -5.2577 13 6 2.0401 -0.7212 1.2492 14 7 1.5517 -0.0307 2.4454 15 16 1.6257 -0.7783 3.9212 16 8 1.0212 -2.0455 3.7028 17 8 1.0524 0.1619 4.8194 18 6 3.4007 -0.9669 4.2445 19 6 3.6025 -1.6532 5.5970 20 6 5.0996 -1.8130 5.8694 21 1 5.6030 -0.8495 5.7892 22 6 5.3305 -2.4252 7.2739 23 6 6.7285 -3.0750 7.0860 24 6 6.6830 -3.5296 5.6114 25 8 5.6759 -2.7546 4.9504 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1300 -0.7208 -1.2496 33 1 1.6768 -1.7489 -1.2494 34 1 2.8617 -1.8820 -4.7338 35 1 3.1300 -0.7208 1.2494 36 1 1.6768 -1.7489 1.2492 37 1 1.1850 0.8644 2.3729 38 1 3.8733 0.0152 4.2617 39 1 3.8508 -1.5730 3.4583 40 1 3.1299 -2.6353 5.5802 41 1 3.1525 -1.0468 6.3829 42 1 5.3571 -1.6508 8.0404 43 1 4.5756 -3.1770 7.5036 44 1 6.8519 -3.9293 7.7516 45 1 7.5231 -2.3455 7.2427 46 1 6.4289 -4.5883 5.5584 47 1 7.6506 -3.3577 5.1400 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588142860.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:36 Heat of formation + Delta-G solvation = -146.911929 kcal Electronic energy + Delta-G solvation = -25589.836624 eV Core-core repulsion = 21898.845703 eV Total energy + Delta-G solvation = -3690.990921 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.81437 -37.69596 -36.95363 -35.85321 -34.22832 -33.52861 -32.46078 -31.87572 -28.86809 -27.01484 -26.43749 -25.80000 -24.37777 -22.72316 -22.01169 -21.38013 -19.20015 -18.42089 -17.42201 -17.31746 -16.55440 -16.33933 -15.97386 -15.85733 -15.22421 -14.69076 -14.54899 -14.27639 -14.04186 -13.82909 -13.47284 -13.31797 -12.81594 -12.66688 -12.39160 -12.19166 -12.06623 -12.02401 -11.95163 -11.91607 -11.81795 -11.76849 -11.36899 -11.22597 -11.19673 -10.96784 -10.83901 -10.59660 -10.55411 -10.36429 -10.23676 -9.86247 -9.81126 -9.20559 -9.10483 -8.88318 -8.33949 -5.98490 -3.99276 0.33503 2.86139 3.33609 3.38754 3.40595 3.42156 3.77956 4.06957 4.20119 4.28779 4.46176 4.46880 4.54260 4.68418 4.76028 4.87950 5.03855 5.25730 5.26866 5.31012 5.33723 5.37195 5.40817 5.48259 5.57226 5.59738 5.70074 5.76133 5.78988 5.88670 6.15522 6.28241 6.37431 6.43911 6.69513 6.71678 6.72556 7.08931 7.12445 7.17275 7.25190 7.64894 7.78382 8.00362 8.43153 9.05222 9.63723 11.12982 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.017346 B = 0.002871 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.862230 B = 9749.014079 C =10882.773701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.065 4.065 3 C -0.128 4.128 4 C 0.034 3.966 5 C -0.510 4.510 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.121 3.879 14 N -1.113 6.113 15 S 2.610 3.390 16 O -0.955 6.955 17 O -0.969 6.969 18 C -0.629 4.629 19 C -0.110 4.110 20 C 0.088 3.912 21 H 0.076 0.924 22 C -0.156 4.156 23 C -0.156 4.156 24 C 0.049 3.951 25 O -0.375 6.375 26 H 0.032 0.968 27 H 0.064 0.936 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.067 0.933 31 H 0.031 0.969 32 H 0.018 0.982 33 H 0.019 0.981 34 H 0.260 0.740 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.416 0.584 38 H 0.132 0.868 39 H 0.141 0.859 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.070 0.930 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.078 -0.004 22.602 23.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.067 4.067 3 C -0.185 4.185 4 C -0.004 4.004 5 C -0.549 4.549 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.005 4.005 14 N -0.874 5.874 15 S 2.702 3.298 16 O -0.945 6.945 17 O -0.959 6.959 18 C -0.758 4.758 19 C -0.149 4.149 20 C 0.030 3.970 21 H 0.094 0.906 22 C -0.194 4.194 23 C -0.194 4.194 24 C -0.028 4.028 25 O -0.295 6.295 26 H 0.051 0.949 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.050 0.950 32 H 0.036 0.964 33 H 0.038 0.962 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.252 0.748 38 H 0.150 0.850 39 H 0.159 0.841 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.104 0.896 43 H 0.101 0.899 44 H 0.101 0.899 45 H 0.095 0.905 46 H 0.088 0.912 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.438 -0.593 22.784 23.683 hybrid contribution 0.494 0.887 -1.038 1.453 sum 6.931 0.294 21.746 22.825 Atomic orbital electron populations 1.21751 0.95126 1.01336 1.00322 1.20798 0.95707 0.95638 0.94512 1.21769 1.00341 0.96068 1.00371 1.19133 0.96258 0.95362 0.89647 1.21160 1.31117 1.12064 0.90536 0.92303 1.25001 0.95335 0.95092 0.99052 1.69947 1.37008 1.23049 1.23517 0.86713 0.79191 0.79729 0.82665 1.20372 1.21434 1.20329 1.21613 0.97843 0.96531 0.84482 1.55522 1.78488 1.30461 1.22972 1.04899 0.77295 0.74366 0.73246 1.93605 1.72890 1.43534 1.84445 1.93574 1.75495 1.62649 1.64226 1.30607 1.28002 1.10384 1.06784 1.21471 0.97106 1.01922 0.94420 1.22909 0.92905 0.93319 0.87875 0.90576 1.23356 0.97428 1.01120 0.97451 1.23118 0.97658 1.01560 0.97071 1.23138 0.92071 0.95921 0.91651 1.88468 1.53966 1.51278 1.35799 0.94860 0.91659 0.93285 0.93394 0.91447 0.95037 0.96361 0.96222 0.93015 0.92183 0.90500 0.74826 0.84974 0.84078 0.89462 0.89171 0.89581 0.89876 0.89928 0.90465 0.91158 0.91297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 8.05 37.16 0.30 -2.08 16 2 C -0.06 -1.23 0.55 -154.50 -0.08 -1.31 16 3 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 4 C 0.03 0.81 4.04 -27.88 -0.11 0.70 16 5 C -0.51 -13.53 7.65 -34.44 -0.26 -13.79 16 6 H 0.06 1.51 5.68 -52.48 -0.30 1.21 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.28 13.29 55.43 0.74 -25.54 16 9 Si 0.89 21.26 29.54 -169.99 -5.02 16.23 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 C 0.12 1.94 5.02 -4.04 -0.02 1.92 16 14 N -1.11 -15.16 5.22 -10.61 -0.06 -15.21 16 15 S 2.61 33.96 5.46 -107.50 -0.59 33.38 16 16 O -0.95 -15.93 17.50 -57.54 -1.01 -16.94 16 17 O -0.97 -14.56 18.08 -57.54 -1.04 -15.60 16 18 C -0.63 -6.27 6.00 37.16 0.22 -6.04 16 19 C -0.11 -1.01 4.96 -26.73 -0.13 -1.14 16 20 C 0.09 0.76 3.41 -25.70 -0.09 0.68 16 21 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 22 C -0.16 -0.99 6.57 -24.48 -0.16 -1.15 16 23 C -0.16 -0.91 7.02 -24.79 -0.17 -1.09 16 24 C 0.05 0.39 7.79 37.88 0.30 0.69 16 25 O -0.38 -4.13 10.75 -35.23 -0.38 -4.51 16 26 H 0.03 0.53 7.19 -51.93 -0.37 0.16 16 27 H 0.06 1.29 6.62 -51.93 -0.34 0.94 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 31 H 0.03 0.45 6.60 -51.93 -0.34 0.10 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 1.30 7.69 -51.93 -0.40 0.90 16 37 H 0.42 5.28 6.44 -34.47 -0.22 5.06 16 38 H 0.13 1.05 8.14 -51.92 -0.42 0.62 16 39 H 0.14 1.47 7.95 -51.93 -0.41 1.05 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.08 0.51 8.06 -51.93 -0.42 0.09 16 44 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 16 46 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 380.86 15.07 5.74 5.74 Total: -1.00 -34.11 380.86 -9.84 -43.94 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -8.21 Total: 1.58 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: -0.02 Total: -23.08 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 0.68 Total: -40.76 kcal Atomic # 8 Polarization: -34.62 SS G_CDS: -2.43 Total: -37.04 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 33.96 SS G_CDS: -0.59 Total: 33.38 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.11 -9.84 -43.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588142860.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.968 kcal (2) G-P(sol) polarization free energy of solvation -34.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds