Wall clock time and date at job start Tue Mar 31 2020 12:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52992 * 109.47223 * 240.00442 * 2 1 3 5 5 C 1.50698 * 109.47592 * 59.99575 * 4 2 1 6 6 H 1.08003 * 120.00057 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00356 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99989 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00117 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46744 * 90.00434 * 9 7 5 11 11 H 1.48500 * 109.47304 * 210.00023 * 9 7 5 12 12 H 1.48498 * 109.47341 * 330.00626 * 9 7 5 13 13 C 1.52997 * 109.47127 * 119.99936 * 2 1 3 14 14 N 1.46505 * 109.47212 * 300.00138 * 13 2 1 15 15 S 1.65596 * 119.99941 * 164.99768 * 14 13 2 16 16 O 1.42097 * 104.27711 * 181.07266 * 15 14 13 17 17 O 1.42100 * 104.27686 * 308.93150 * 15 14 13 18 18 C 1.81406 * 104.44797 * 65.00238 * 15 14 13 19 19 C 1.52999 * 109.47078 * 180.02562 * 18 15 14 20 20 C 1.52994 * 109.47161 * 180.02562 * 19 18 15 21 21 H 1.09007 * 109.82325 * 305.56315 * 20 19 18 22 22 C 1.54379 * 109.83129 * 184.58419 * 20 19 18 23 23 C 1.55312 * 102.25292 * 219.12610 * 22 20 19 24 24 C 1.54941 * 100.94159 * 34.13309 * 23 22 20 25 25 O 1.43238 * 109.83571 * 66.44740 * 20 19 18 26 26 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 28 28 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 31 31 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 32 32 H 1.09002 * 109.47103 * 179.97438 * 4 2 1 33 33 H 1.09001 * 109.47066 * 299.99881 * 4 2 1 34 34 H 0.96996 * 119.99885 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.47153 * 180.02562 * 13 2 1 36 36 H 1.09001 * 109.46832 * 60.00321 * 13 2 1 37 37 H 0.96997 * 119.99914 * 345.00649 * 14 13 2 38 38 H 1.08999 * 109.47047 * 299.99963 * 18 15 14 39 39 H 1.08991 * 109.46984 * 59.99873 * 18 15 14 40 40 H 1.09004 * 109.46523 * 299.99464 * 19 18 15 41 41 H 1.08996 * 109.47442 * 59.99434 * 19 18 15 42 42 H 1.09000 * 110.84950 * 337.31835 * 22 20 19 43 43 H 1.08997 * 110.85118 * 100.93940 * 22 20 19 44 44 H 1.09001 * 111.12798 * 276.21243 * 23 22 20 45 45 H 1.08997 * 111.15978 * 152.06637 * 23 22 20 46 46 H 1.08996 * 110.30925 * 204.64057 * 24 23 22 47 47 H 1.09000 * 110.31090 * 82.46786 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9171 0.8676 -2.3806 7 6 1.8713 -0.4814 -3.7320 8 7 2.6275 -1.5507 -3.8527 9 14 1.2479 0.3987 -5.2572 10 1 2.2253 1.4411 -5.6612 11 1 1.0838 -0.5805 -6.3615 12 1 -0.0607 1.0352 -4.9614 13 6 2.0401 -0.7212 1.2492 14 7 1.5517 -0.0306 2.4454 15 16 1.6256 -0.7781 3.9212 16 8 1.0523 0.1620 4.8194 17 8 1.0211 -2.0454 3.7028 18 6 3.4006 -0.9668 4.2446 19 6 3.6024 -1.6542 5.5965 20 6 5.0994 -1.8128 5.8695 21 1 5.5739 -2.3329 5.0373 22 6 5.3123 -2.6074 7.1759 23 6 6.5196 -1.8703 7.8171 24 6 6.2468 -0.4128 7.3677 25 8 5.7009 -0.5245 6.0437 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1301 -0.7207 -1.2494 33 1 1.6767 -1.7488 -1.2493 34 1 2.8618 -1.8820 -4.7337 35 1 3.1301 -0.7208 1.2495 36 1 1.6767 -1.7489 1.2492 37 1 1.1850 0.8644 2.3729 38 1 3.8507 -1.5730 3.4584 39 1 3.8732 0.0152 4.2617 40 1 3.1523 -1.0483 6.3829 41 1 3.1299 -2.6362 5.5790 42 1 4.4331 -2.5425 7.8170 43 1 5.5616 -3.6466 6.9617 44 1 7.4633 -2.2361 7.4124 45 1 6.5013 -1.9563 8.9035 46 1 7.1758 0.1569 7.3470 47 1 5.5266 0.0604 8.0351 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588142861.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:39 Heat of formation + Delta-G solvation = -147.385316 kcal Electronic energy + Delta-G solvation = -25566.518739 eV Core-core repulsion = 21875.507290 eV Total energy + Delta-G solvation = -3691.011449 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.88516 -37.70601 -36.95118 -35.85515 -34.15642 -33.53632 -32.48345 -31.88352 -28.87608 -27.02582 -26.44117 -25.81083 -24.43881 -22.73551 -22.06916 -21.29632 -19.19268 -18.42046 -17.42891 -17.39161 -16.61345 -16.36541 -15.94501 -15.91927 -15.02146 -14.73498 -14.53241 -14.27224 -14.14756 -13.92545 -13.34736 -13.31401 -12.83073 -12.76566 -12.40182 -12.21084 -12.07590 -12.02342 -11.94100 -11.85099 -11.80764 -11.72574 -11.40213 -11.24975 -11.20326 -10.98764 -10.83043 -10.62629 -10.59312 -10.37707 -10.23036 -9.89978 -9.82700 -9.21430 -9.11187 -8.88729 -8.35401 -6.00046 -4.00550 0.34011 2.86250 3.31535 3.38634 3.41182 3.42843 3.79384 4.05388 4.24147 4.28680 4.41738 4.45897 4.52949 4.68563 4.75262 4.86818 5.09659 5.21824 5.26717 5.31083 5.33528 5.35921 5.38150 5.43155 5.55512 5.57871 5.68932 5.77955 5.79224 5.87905 6.14513 6.26612 6.36979 6.43441 6.67877 6.69139 6.71888 7.08423 7.11726 7.16452 7.24724 7.63255 7.76604 7.99044 8.41968 9.04126 9.62586 11.11508 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.020376 B = 0.002693 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.844995 B =10396.462602 C =11044.319710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.065 4.065 3 C -0.128 4.128 4 C 0.033 3.967 5 C -0.509 4.509 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.121 3.879 14 N -1.113 6.113 15 S 2.609 3.391 16 O -0.968 6.968 17 O -0.957 6.957 18 C -0.627 4.627 19 C -0.122 4.122 20 C 0.088 3.912 21 H 0.088 0.912 22 C -0.155 4.155 23 C -0.157 4.157 24 C 0.047 3.953 25 O -0.375 6.375 26 H 0.032 0.968 27 H 0.065 0.935 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.067 0.933 31 H 0.031 0.969 32 H 0.018 0.982 33 H 0.019 0.981 34 H 0.260 0.740 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.416 0.584 38 H 0.133 0.867 39 H 0.139 0.861 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.079 0.921 45 H 0.083 0.917 46 H 0.085 0.915 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.702 -0.149 22.845 23.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.067 4.067 3 C -0.186 4.186 4 C -0.004 4.004 5 C -0.548 4.548 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.005 4.005 14 N -0.874 5.874 15 S 2.702 3.298 16 O -0.958 6.958 17 O -0.947 6.947 18 C -0.756 4.756 19 C -0.161 4.161 20 C 0.029 3.971 21 H 0.106 0.894 22 C -0.193 4.193 23 C -0.195 4.195 24 C -0.029 4.029 25 O -0.294 6.294 26 H 0.052 0.948 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.050 0.950 32 H 0.036 0.964 33 H 0.038 0.962 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.252 0.748 38 H 0.152 0.848 39 H 0.157 0.843 40 H 0.100 0.900 41 H 0.107 0.893 42 H 0.099 0.901 43 H 0.104 0.896 44 H 0.098 0.902 45 H 0.102 0.898 46 H 0.104 0.896 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.110 -0.552 23.087 23.889 hybrid contribution 0.350 0.722 -1.085 1.349 sum 6.460 0.170 22.003 22.932 Atomic orbital electron populations 1.21752 0.95118 1.01318 1.00358 1.20794 0.95717 0.95668 0.94472 1.21771 1.00364 0.96042 1.00403 1.19138 0.96248 0.95360 0.89696 1.21199 1.31030 1.12024 0.90512 0.92235 1.25007 0.95354 0.95083 0.99077 1.69958 1.37142 1.23058 1.23408 0.86647 0.79219 0.79390 0.83045 1.20815 1.21364 1.19940 1.21607 0.97788 0.96502 0.84565 1.55522 1.78503 1.30487 1.22938 1.04908 0.77347 0.74369 0.73219 1.93575 1.75501 1.62571 1.64167 1.93600 1.72999 1.43596 1.84538 1.30583 1.27830 1.11216 1.05951 1.21724 0.98236 1.01489 0.94638 1.22699 0.92137 0.84235 0.98021 0.89431 1.23233 0.99073 1.00552 0.96439 1.23272 0.98965 0.95546 1.01698 1.23412 0.98547 0.96585 0.84395 1.88465 1.75631 1.33939 1.31397 0.94848 0.91640 0.93299 0.93370 0.91443 0.95003 0.96372 0.96228 0.93082 0.92244 0.90544 0.74787 0.84818 0.84268 0.89968 0.89283 0.90057 0.89559 0.90236 0.89837 0.89639 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 8.05 37.16 0.30 -2.08 16 2 C -0.06 -1.22 0.55 -154.51 -0.08 -1.30 16 3 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 4 C 0.03 0.80 4.04 -27.89 -0.11 0.68 16 5 C -0.51 -13.44 7.65 -34.44 -0.26 -13.70 16 6 H 0.06 1.52 5.68 -52.48 -0.30 1.23 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.14 13.29 55.43 0.74 -25.40 16 9 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 13 C 0.12 1.91 5.02 -4.04 -0.02 1.89 16 14 N -1.11 -15.24 5.22 -10.61 -0.06 -15.29 16 15 S 2.61 34.18 5.46 -107.50 -0.59 33.59 16 16 O -0.97 -15.05 18.08 -57.54 -1.04 -16.09 16 17 O -0.96 -15.62 17.50 -57.54 -1.01 -16.63 16 18 C -0.63 -6.29 5.98 37.16 0.22 -6.07 16 19 C -0.12 -1.12 4.79 -26.73 -0.13 -1.24 16 20 C 0.09 0.75 3.52 -26.01 -0.09 0.66 16 21 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 22 C -0.16 -0.97 6.54 -24.78 -0.16 -1.13 16 23 C -0.16 -0.88 7.16 -24.48 -0.18 -1.06 16 24 C 0.05 0.34 7.78 38.18 0.30 0.64 16 25 O -0.37 -3.85 10.63 -35.23 -0.37 -4.23 16 26 H 0.03 0.53 7.19 -51.93 -0.37 0.16 16 27 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 31 H 0.03 0.46 6.60 -51.93 -0.34 0.11 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 1.26 7.69 -51.93 -0.40 0.86 16 37 H 0.42 5.38 6.44 -34.47 -0.22 5.16 16 38 H 0.13 1.19 8.14 -51.92 -0.42 0.76 16 39 H 0.14 1.34 7.88 -51.93 -0.41 0.93 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 0.46 7.85 -51.93 -0.41 0.05 16 43 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 380.49 15.07 5.73 5.73 Total: -1.00 -33.92 380.49 -9.83 -43.74 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -8.19 Total: 1.59 kcal Atomic # 6 Polarization: -23.17 SS G_CDS: -0.02 Total: -23.19 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: 0.68 Total: -40.69 kcal Atomic # 8 Polarization: -34.53 SS G_CDS: -2.42 Total: -36.95 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 34.18 SS G_CDS: -0.59 Total: 33.59 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.92 -9.83 -43.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588142861.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.642 kcal (2) G-P(sol) polarization free energy of solvation -33.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds