Wall clock time and date at job start Tue Mar 31 2020 12:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52992 * 109.47223 * 240.00442 * 2 1 3 5 5 C 1.50698 * 109.47592 * 59.99575 * 4 2 1 6 6 H 1.08003 * 120.00057 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00356 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99989 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00117 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46744 * 90.00434 * 9 7 5 11 11 H 1.48500 * 109.47304 * 210.00023 * 9 7 5 12 12 H 1.48498 * 109.47341 * 330.00626 * 9 7 5 13 13 C 1.52997 * 109.47127 * 119.99936 * 2 1 3 14 14 N 1.46505 * 109.47212 * 300.00138 * 13 2 1 15 15 S 1.65596 * 119.99941 * 164.99768 * 14 13 2 16 16 O 1.42097 * 104.27711 * 181.07266 * 15 14 13 17 17 O 1.42100 * 104.27686 * 308.93150 * 15 14 13 18 18 C 1.81406 * 104.44797 * 65.00238 * 15 14 13 19 19 C 1.52999 * 109.47078 * 180.02562 * 18 15 14 20 20 C 1.52994 * 109.47161 * 180.02562 * 19 18 15 21 21 H 1.09007 * 109.82325 * 305.56315 * 20 19 18 22 22 C 1.54379 * 109.83129 * 184.58419 * 20 19 18 23 23 C 1.55312 * 102.25292 * 219.12610 * 22 20 19 24 24 C 1.54941 * 100.94159 * 34.13309 * 23 22 20 25 25 O 1.43238 * 109.83571 * 66.44740 * 20 19 18 26 26 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 28 28 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 31 31 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 32 32 H 1.09002 * 109.47103 * 179.97438 * 4 2 1 33 33 H 1.09001 * 109.47066 * 299.99881 * 4 2 1 34 34 H 0.96996 * 119.99885 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.47153 * 180.02562 * 13 2 1 36 36 H 1.09001 * 109.46832 * 60.00321 * 13 2 1 37 37 H 0.96997 * 119.99914 * 345.00649 * 14 13 2 38 38 H 1.08999 * 109.47047 * 299.99963 * 18 15 14 39 39 H 1.08991 * 109.46984 * 59.99873 * 18 15 14 40 40 H 1.09004 * 109.46523 * 299.99464 * 19 18 15 41 41 H 1.08996 * 109.47442 * 59.99434 * 19 18 15 42 42 H 1.09000 * 110.84950 * 337.31835 * 22 20 19 43 43 H 1.08997 * 110.85118 * 100.93940 * 22 20 19 44 44 H 1.09001 * 111.12798 * 276.21243 * 23 22 20 45 45 H 1.08997 * 111.15978 * 152.06637 * 23 22 20 46 46 H 1.08996 * 110.30925 * 204.64057 * 24 23 22 47 47 H 1.09000 * 110.31090 * 82.46786 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9171 0.8676 -2.3806 7 6 1.8713 -0.4814 -3.7320 8 7 2.6275 -1.5507 -3.8527 9 14 1.2479 0.3987 -5.2572 10 1 2.2253 1.4411 -5.6612 11 1 1.0838 -0.5805 -6.3615 12 1 -0.0607 1.0352 -4.9614 13 6 2.0401 -0.7212 1.2492 14 7 1.5517 -0.0306 2.4454 15 16 1.6256 -0.7781 3.9212 16 8 1.0523 0.1620 4.8194 17 8 1.0211 -2.0454 3.7028 18 6 3.4006 -0.9668 4.2446 19 6 3.6024 -1.6542 5.5965 20 6 5.0994 -1.8128 5.8695 21 1 5.5739 -2.3329 5.0373 22 6 5.3123 -2.6074 7.1759 23 6 6.5196 -1.8703 7.8171 24 6 6.2468 -0.4128 7.3677 25 8 5.7009 -0.5245 6.0437 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1301 -0.7207 -1.2494 33 1 1.6767 -1.7488 -1.2493 34 1 2.8618 -1.8820 -4.7337 35 1 3.1301 -0.7208 1.2495 36 1 1.6767 -1.7489 1.2492 37 1 1.1850 0.8644 2.3729 38 1 3.8507 -1.5730 3.4584 39 1 3.8732 0.0152 4.2617 40 1 3.1523 -1.0483 6.3829 41 1 3.1299 -2.6362 5.5790 42 1 4.4331 -2.5425 7.8170 43 1 5.5616 -3.6466 6.9617 44 1 7.4633 -2.2361 7.4124 45 1 6.5013 -1.9563 8.9035 46 1 7.1758 0.1569 7.3470 47 1 5.5266 0.0604 8.0351 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588142861.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:38 Heat of formation + Delta-G solvation = -171.232768 kcal Electronic energy + Delta-G solvation = -25567.552842 eV Core-core repulsion = 21875.507290 eV Total energy + Delta-G solvation = -3692.045552 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.46896 -39.17354 -38.12585 -37.02105 -35.20073 -34.87915 -33.62386 -33.01147 -29.51128 -28.94312 -27.90820 -27.21278 -25.12361 -24.61486 -22.55683 -21.92942 -20.28610 -19.89434 -18.56246 -18.32180 -18.01671 -17.50652 -17.09284 -16.69786 -16.48282 -15.91859 -15.65693 -15.40375 -15.19038 -14.88725 -14.53594 -14.39499 -13.99620 -13.89573 -13.88932 -13.51111 -13.22553 -13.18165 -13.07715 -12.89031 -12.72318 -12.67106 -12.59052 -12.45648 -12.43663 -12.27331 -12.15974 -11.96813 -11.92995 -11.71323 -11.55761 -11.38580 -10.92561 -10.81309 -10.51778 -10.47198 -10.24195 -8.11618 -6.17457 -0.69923 1.42623 1.43657 1.53299 1.77876 2.45960 2.77022 2.89544 3.23114 3.25985 3.50434 3.63884 3.80777 3.91710 3.95851 4.00520 4.17052 4.21763 4.28748 4.34826 4.46971 4.53643 4.59508 4.75365 4.78177 4.82253 4.83035 4.86721 4.94438 4.95940 5.02436 5.03592 5.07252 5.17757 5.24108 5.28583 5.51736 5.54176 5.58591 5.62221 5.87079 5.94785 6.09747 6.13573 6.37374 6.97252 7.49452 9.00479 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.020376 B = 0.002693 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.844995 B =10396.462602 C =11044.319710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.063 4.063 3 C -0.125 4.125 4 C 0.037 3.963 5 C -0.513 4.513 6 H 0.066 0.934 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.953 3.047 10 H -0.275 1.275 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.127 3.873 14 N -1.111 6.111 15 S 2.619 3.381 16 O -0.992 6.992 17 O -0.994 6.994 18 C -0.606 4.606 19 C -0.132 4.132 20 C 0.082 3.918 21 H 0.090 0.910 22 C -0.155 4.155 23 C -0.152 4.152 24 C 0.037 3.963 25 O -0.401 6.401 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.036 0.964 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.065 0.935 32 H -0.001 1.001 33 H -0.010 1.010 34 H 0.259 0.741 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.420 0.580 38 H 0.149 0.851 39 H 0.149 0.851 40 H 0.083 0.917 41 H 0.101 0.899 42 H 0.087 0.913 43 H 0.099 0.901 44 H 0.082 0.918 45 H 0.100 0.900 46 H 0.092 0.908 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.269 0.697 24.228 25.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.064 4.064 3 C -0.182 4.182 4 C 0.000 4.000 5 C -0.552 4.552 6 H 0.084 0.916 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.779 3.221 10 H -0.201 1.201 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.001 3.999 14 N -0.872 5.872 15 S 2.716 3.284 16 O -0.983 6.983 17 O -0.984 6.984 18 C -0.738 4.738 19 C -0.171 4.171 20 C 0.024 3.976 21 H 0.108 0.892 22 C -0.193 4.193 23 C -0.189 4.189 24 C -0.039 4.039 25 O -0.321 6.321 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.017 0.983 33 H 0.008 0.992 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.257 0.743 38 H 0.168 0.832 39 H 0.167 0.833 40 H 0.102 0.898 41 H 0.119 0.881 42 H 0.105 0.895 43 H 0.117 0.883 44 H 0.101 0.899 45 H 0.118 0.882 46 H 0.110 0.890 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.627 0.320 24.471 25.354 hybrid contribution 0.217 0.451 -1.442 1.527 sum 6.844 0.772 23.029 24.036 Atomic orbital electron populations 1.21721 0.94983 1.00729 1.00936 1.20650 0.95826 0.96458 0.93502 1.21717 1.00538 0.94795 1.01167 1.19019 0.94900 0.94236 0.91886 1.21611 1.30204 1.11922 0.91420 0.91611 1.25850 0.95804 0.95885 1.02365 1.70089 1.38829 1.24761 1.23983 0.85631 0.79017 0.78239 0.79253 1.20100 1.21512 1.18999 1.21397 0.98891 0.95683 0.83947 1.55355 1.78962 1.30451 1.22428 1.04494 0.78513 0.73040 0.72374 1.93540 1.77161 1.63107 1.64490 1.93554 1.75101 1.44895 1.84820 1.30388 1.23700 1.12423 1.07291 1.21907 0.99211 1.02126 0.93890 1.22797 0.91277 0.84185 0.99389 0.89248 1.23273 0.99642 1.00963 0.95390 1.23271 0.98795 0.94143 1.02703 1.23608 0.98879 0.97946 0.83500 1.88427 1.75960 1.34820 1.32930 0.92125 0.93122 0.94505 0.93119 0.93246 0.91648 0.98283 0.99165 0.93196 0.90247 0.91552 0.74262 0.83245 0.83284 0.89832 0.88073 0.89483 0.88287 0.89942 0.88170 0.88977 0.91804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.62 8.05 71.98 0.58 -4.04 16 2 C -0.06 -2.33 0.55 -52.18 -0.03 -2.35 16 3 C -0.12 -4.12 8.05 71.98 0.58 -3.54 16 4 C 0.04 1.83 4.04 29.84 0.12 1.95 16 5 C -0.51 -27.34 7.65 25.60 0.20 -27.15 16 6 H 0.07 3.36 5.68 -2.91 -0.02 3.34 16 7 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 8 N -0.94 -55.69 13.29 21.45 0.28 -55.40 16 9 Si 0.95 43.68 29.54 68.60 2.03 45.71 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 12 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 13 C 0.13 3.88 5.02 86.38 0.43 4.32 16 14 N -1.11 -28.56 5.22 -187.48 -0.98 -29.54 16 15 S 2.62 65.37 5.46 -56.49 -0.31 65.06 16 16 O -0.99 -29.73 18.08 -127.65 -2.31 -32.04 16 17 O -0.99 -31.89 17.50 -127.65 -2.23 -34.13 16 18 C -0.61 -10.91 5.98 71.98 0.43 -10.48 16 19 C -0.13 -2.17 4.79 30.59 0.15 -2.02 16 20 C 0.08 1.25 3.52 31.06 0.11 1.36 16 21 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 22 C -0.16 -1.58 6.54 31.86 0.21 -1.37 16 23 C -0.15 -1.36 7.16 32.05 0.23 -1.13 16 24 C 0.04 0.47 7.78 72.65 0.56 1.04 16 25 O -0.40 -7.58 10.63 -148.98 -1.58 -9.16 16 26 H 0.06 1.85 7.19 -2.39 -0.02 1.84 16 27 H 0.05 1.97 6.62 -2.39 -0.02 1.96 16 28 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.05 1.80 6.62 -2.39 -0.02 1.78 16 31 H 0.06 1.71 6.60 -2.39 -0.02 1.69 16 32 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 33 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 34 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 35 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.07 2.17 7.69 -2.39 -0.02 2.16 16 37 H 0.42 9.93 6.44 -96.75 -0.62 9.31 16 38 H 0.15 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.15 2.50 7.88 -2.39 -0.02 2.48 16 40 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 41 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.09 0.78 7.85 -2.39 -0.02 0.76 16 43 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -73.28 380.49 -0.75 -74.03 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: 0.32 Total: 18.55 kcal Atomic # 6 Polarization: -47.10 SS G_CDS: 4.03 Total: -43.07 kcal Atomic # 7 Polarization: -84.25 SS G_CDS: -0.69 Total: -84.94 kcal Atomic # 8 Polarization: -69.20 SS G_CDS: -6.13 Total: -75.33 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: 65.37 SS G_CDS: -0.31 Total: 65.06 kcal Total: -73.28 -0.75 -74.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588142861.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.206 kcal (2) G-P(sol) polarization free energy of solvation -73.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds