Wall clock time and date at job start Tue Mar 31 2020 13:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42898 * 113.99509 * 2 1 4 4 H 1.09002 * 109.47421 * 30.74532 * 3 2 1 5 5 C 1.52999 * 109.47492 * 270.74415 * 3 2 1 6 6 S 1.81403 * 109.46713 * 297.33498 * 5 3 2 7 7 O 1.42097 * 110.54105 * 60.44881 * 6 5 3 8 8 O 1.42097 * 110.54329 * 283.69285 * 6 5 3 9 9 N 1.65610 * 104.44656 * 172.06981 * 6 5 3 10 10 C 1.36939 * 119.99850 * 270.00002 * 9 6 5 11 11 H 1.07995 * 119.99415 * 128.68410 * 10 9 6 12 12 C 1.38813 * 120.00117 * 308.68318 * 10 9 6 13 13 N 1.31619 * 119.99590 * 333.64837 * 12 10 9 14 14 Si 1.86796 * 120.00102 * 153.64780 * 12 10 9 15 15 H 1.48505 * 109.46861 * 59.99916 * 14 12 10 16 16 H 1.48494 * 109.47174 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47376 * 300.00206 * 14 12 10 18 18 C 1.46491 * 119.99897 * 90.00149 * 9 6 5 19 19 C 1.54968 * 110.92438 * 125.32353 * 18 9 6 20 20 C 1.54268 * 104.16020 * 156.29749 * 19 18 9 21 21 C 1.53879 * 106.63897 * 336.44428 * 20 19 18 22 22 C 1.54262 * 106.60011 * 359.97438 * 21 20 19 23 23 C 1.53000 * 109.46978 * 150.74034 * 3 2 1 24 24 C 1.53000 * 109.47345 * 179.97438 * 23 3 2 25 25 C 1.52999 * 109.47319 * 300.00486 * 23 3 2 26 26 H 1.08995 * 109.47110 * 64.61762 * 1 2 3 27 27 H 1.08998 * 109.46870 * 184.61366 * 1 2 3 28 28 H 1.09000 * 109.47435 * 304.61035 * 1 2 3 29 29 H 1.08999 * 109.47433 * 177.33842 * 5 3 2 30 30 H 1.08999 * 109.47270 * 57.33046 * 5 3 2 31 31 H 0.97007 * 119.99759 * 180.02562 * 13 12 10 32 32 H 1.09006 * 110.67359 * 2.01795 * 18 9 6 33 33 H 1.08999 * 110.47316 * 37.64244 * 19 18 9 34 34 H 1.08997 * 110.52967 * 274.97007 * 19 18 9 35 35 H 1.09001 * 110.02947 * 217.14403 * 20 19 18 36 36 H 1.08995 * 110.03852 * 95.75371 * 20 19 18 37 37 H 1.09000 * 110.03271 * 119.26716 * 21 20 19 38 38 H 1.09005 * 110.03384 * 240.64538 * 21 20 19 39 39 H 1.09007 * 110.48877 * 142.28732 * 22 21 20 40 40 H 1.09003 * 110.49323 * 264.80175 * 22 21 20 41 41 H 1.09002 * 109.46639 * 60.00018 * 23 3 2 42 42 H 1.08994 * 109.47239 * 300.00606 * 24 23 3 43 43 H 1.09002 * 109.47048 * 60.00501 * 24 23 3 44 44 H 1.08997 * 109.47209 * 180.02562 * 24 23 3 45 45 H 1.08994 * 109.47656 * 59.99480 * 25 23 3 46 46 H 1.09001 * 109.46770 * 179.97438 * 25 23 3 47 47 H 1.09002 * 109.46883 * 299.99382 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3511 1.9966 0.5254 5 6 2.2005 1.7791 -1.4423 6 16 3.3594 0.6734 -2.2938 7 8 2.8557 -0.6551 -2.3164 8 8 4.6947 0.9439 -1.8900 9 7 3.3053 1.1577 -3.8766 10 6 2.4014 0.5913 -4.7353 11 1 1.7579 1.2196 -5.3333 12 6 2.3123 -0.7902 -4.8372 13 7 3.3576 -1.5394 -4.5575 14 14 0.7088 -1.5858 -5.3714 15 1 0.3436 -1.1017 -6.7269 16 1 0.8742 -3.0612 -5.4010 17 1 -0.3658 -1.2269 -4.4114 18 6 4.2244 2.1918 -4.3580 19 6 5.0259 1.6917 -5.5863 20 6 5.4418 2.9848 -6.3176 21 6 4.4347 4.0706 -5.8996 22 6 3.4409 3.3999 -4.9290 23 6 3.3673 1.2596 0.7051 24 6 3.9898 2.6572 0.7045 25 6 3.1770 0.7860 2.1474 26 1 -0.3633 0.4405 -0.9284 27 1 -0.3633 -1.0243 0.0827 28 1 -0.3634 0.5837 0.8458 29 1 2.5997 2.7934 -1.4421 30 1 1.2406 1.7665 -1.9586 31 1 3.2954 -2.5049 -4.6291 32 1 4.8975 2.5095 -3.5615 33 1 4.3955 1.0763 -6.2281 34 1 5.9064 1.1342 -5.2670 35 1 5.4010 2.8332 -7.3963 36 1 6.4491 3.2751 -6.0193 37 1 4.9533 4.8875 -5.3977 38 1 3.9060 4.4467 -6.7756 39 1 3.1650 4.0879 -4.1297 40 1 2.5532 3.0629 -5.4643 41 1 4.0264 0.5684 0.1797 42 1 4.1254 2.9942 -0.3231 43 1 3.3308 3.3487 1.2297 44 1 4.9568 2.6244 1.2064 45 1 2.7337 -0.2097 2.1474 46 1 4.1439 0.7529 2.6495 47 1 2.5178 1.4771 2.6728 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592033478.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:16 Heat of formation + Delta-G solvation = -124.012025 kcal Electronic energy + Delta-G solvation = -28135.722562 eV Core-core repulsion = 24445.724655 eV Total energy + Delta-G solvation = -3689.997907 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -38.43465 -37.72346 -35.49769 -34.70592 -34.21698 -33.71160 -31.32147 -29.78265 -27.93964 -27.07413 -26.74759 -26.09877 -24.24806 -22.97587 -20.02542 -19.71046 -19.53370 -18.59844 -16.90785 -16.21965 -15.95078 -15.46190 -15.13034 -14.89709 -14.59625 -14.34282 -14.18783 -14.01871 -13.55087 -13.04967 -12.83596 -12.64778 -12.59213 -12.13147 -12.01855 -11.92849 -11.73280 -11.60987 -11.43523 -11.15384 -11.03630 -10.77436 -10.73588 -10.65034 -10.58178 -10.51483 -10.36613 -10.28835 -10.14560 -10.04446 -9.96204 -9.71892 -9.50453 -9.30671 -9.05000 -8.52730 -7.47656 -6.40405 -4.04684 1.95212 3.26445 3.33235 3.34359 4.05589 4.19346 4.51028 4.95348 5.01954 5.08719 5.27092 5.33908 5.34837 5.46304 5.49213 5.52850 5.56400 5.70834 5.71485 5.79068 5.84785 5.94143 6.02747 6.03197 6.08833 6.13890 6.15750 6.21699 6.28019 6.30918 6.34477 6.41768 6.46274 6.50707 6.52060 6.57913 6.64586 6.68487 6.91440 7.09402 7.23603 7.50276 7.52896 7.72236 8.31323 9.03713 9.46983 10.64341 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.011908 B = 0.007262 C = 0.005227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.811509 B = 3854.563761 C = 5355.294682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.369 6.369 3 C 0.116 3.884 4 H 0.058 0.942 5 C -0.699 4.699 6 S 2.510 3.490 7 O -0.926 6.926 8 O -1.011 7.011 9 N -0.812 5.812 10 C -0.289 4.289 11 H 0.079 0.921 12 C 0.071 3.929 13 N -0.767 5.767 14 Si 0.913 3.087 15 H -0.275 1.275 16 H -0.282 1.282 17 H -0.270 1.270 18 C 0.151 3.849 19 C -0.113 4.113 20 C -0.124 4.124 21 C -0.119 4.119 22 C -0.138 4.138 23 C -0.117 4.117 24 C -0.141 4.141 25 C -0.140 4.140 26 H 0.042 0.958 27 H 0.084 0.916 28 H 0.034 0.966 29 H 0.110 0.890 30 H 0.113 0.887 31 H 0.277 0.723 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.051 0.949 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.064 0.936 43 H 0.050 0.950 44 H 0.061 0.939 45 H 0.063 0.937 46 H 0.055 0.945 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.490 7.990 3.977 9.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.287 6.287 3 C 0.057 3.943 4 H 0.076 0.924 5 C -0.816 4.816 6 S 2.608 3.392 7 O -0.914 6.914 8 O -1.001 7.001 9 N -0.636 5.636 10 C -0.435 4.435 11 H 0.096 0.904 12 C -0.149 4.149 13 N -0.401 5.401 14 Si 0.739 3.261 15 H -0.200 1.200 16 H -0.208 1.208 17 H -0.195 1.195 18 C 0.043 3.957 19 C -0.153 4.153 20 C -0.162 4.162 21 C -0.158 4.158 22 C -0.178 4.178 23 C -0.136 4.136 24 C -0.198 4.198 25 C -0.197 4.197 26 H 0.061 0.939 27 H 0.103 0.897 28 H 0.053 0.947 29 H 0.128 0.872 30 H 0.132 0.868 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.097 0.903 41 H 0.105 0.895 42 H 0.083 0.917 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.074 0.926 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.742 7.045 4.692 8.642 hybrid contribution -1.529 0.416 -0.130 1.590 sum -3.272 7.461 4.562 9.337 Atomic orbital electron populations 1.22734 0.81560 1.02440 0.99517 1.88039 1.19342 1.26579 1.94732 1.21655 0.94793 0.85026 0.92832 0.92351 1.31650 1.22119 1.19082 1.08708 1.12470 0.75397 0.77315 0.73993 1.93449 1.80974 1.32826 1.84180 1.93309 1.36323 1.86986 1.83439 1.52861 1.41420 1.48846 1.20435 1.18794 1.15024 0.89153 1.20508 0.90376 1.25622 0.97128 0.97322 0.94782 1.69912 1.28511 1.06717 1.34942 0.86236 0.83009 0.78313 0.78516 1.20046 1.20770 1.19471 1.21672 0.90192 0.87753 0.96084 1.22490 0.99742 0.95925 0.97094 1.22121 0.98178 0.96192 0.99757 1.22040 0.97251 0.97655 0.98818 1.22764 0.99410 0.97272 0.98336 1.21495 0.95438 0.99218 0.97406 1.21793 1.00297 0.95000 1.02694 1.21737 1.01383 1.01701 0.94905 0.93942 0.89735 0.94734 0.87167 0.86826 0.91294 0.90223 0.89493 0.92409 0.92533 0.92757 0.92750 0.92589 0.93064 0.90343 0.89543 0.91699 0.93120 0.91945 0.91757 0.92554 0.93174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.87 101.05 1.10 1.64 16 2 O -0.37 -7.37 8.58 -46.95 -0.40 -7.77 16 3 C 0.12 2.14 1.97 -26.73 -0.05 2.09 16 4 H 0.06 0.92 7.73 -51.93 -0.40 0.52 16 5 C -0.70 -13.90 5.66 37.16 0.21 -13.69 16 6 S 2.51 62.11 4.33 -107.50 -0.47 61.65 16 7 O -0.93 -26.25 13.17 -63.24 -0.83 -27.09 16 8 O -1.01 -26.37 14.39 -57.54 -0.83 -27.19 16 9 N -0.81 -19.40 2.68 -51.46 -0.14 -19.54 16 10 C -0.29 -7.12 7.48 -15.06 -0.11 -7.23 16 11 H 0.08 1.81 6.88 -52.49 -0.36 1.45 16 12 C 0.07 1.83 3.91 -17.43 -0.07 1.76 16 13 N -0.77 -21.31 11.80 55.49 0.66 -20.65 16 14 Si 0.91 20.31 29.63 -169.99 -5.04 15.27 16 15 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 18 C 0.15 3.16 3.24 -65.90 -0.21 2.95 16 19 C -0.11 -2.27 6.37 -25.03 -0.16 -2.42 16 20 C -0.12 -1.95 6.80 -25.61 -0.17 -2.13 16 21 C -0.12 -1.76 6.80 -25.61 -0.17 -1.94 16 22 C -0.14 -2.39 6.38 -25.07 -0.16 -2.55 16 23 C -0.12 -2.10 2.20 -90.62 -0.20 -2.30 16 24 C -0.14 -2.19 8.72 37.16 0.32 -1.87 16 25 C -0.14 -2.07 9.05 37.16 0.34 -1.73 16 26 H 0.04 0.68 7.85 -51.93 -0.41 0.27 16 27 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 28 H 0.03 0.45 7.98 -51.93 -0.41 0.03 16 29 H 0.11 1.95 6.57 -51.92 -0.34 1.61 16 30 H 0.11 2.21 7.85 -51.92 -0.41 1.80 16 31 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.08 1.68 6.93 -51.93 -0.36 1.32 16 33 H 0.09 1.90 7.14 -51.93 -0.37 1.53 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.08 1.41 6.63 -51.93 -0.34 1.07 16 41 H 0.09 1.85 5.79 -51.93 -0.30 1.55 16 42 H 0.06 1.08 6.16 -51.93 -0.32 0.76 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.06 0.99 7.68 -51.93 -0.40 0.59 16 46 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 368.44 15.07 5.55 5.55 Total: -1.00 -30.90 368.44 -9.06 -39.95 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -8.21 Total: 7.25 kcal Atomic # 6 Polarization: -28.08 SS G_CDS: 0.65 Total: -27.43 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: 0.52 Total: -40.19 kcal Atomic # 8 Polarization: -59.99 SS G_CDS: -2.06 Total: -62.06 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.04 Total: 15.27 kcal Atomic # 16 Polarization: 62.11 SS G_CDS: -0.47 Total: 61.65 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.90 -9.06 -39.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592033478.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.061 kcal (2) G-P(sol) polarization free energy of solvation -30.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds