Wall clock time and date at job start Tue Mar 31 2020 13:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42898 * 113.99509 * 2 1 4 4 H 1.09002 * 109.47421 * 30.74532 * 3 2 1 5 5 C 1.52999 * 109.47492 * 270.74415 * 3 2 1 6 6 S 1.81403 * 109.46713 * 297.33498 * 5 3 2 7 7 O 1.42097 * 110.54105 * 60.44881 * 6 5 3 8 8 O 1.42097 * 110.54329 * 283.69285 * 6 5 3 9 9 N 1.65610 * 104.44656 * 172.06981 * 6 5 3 10 10 C 1.36939 * 119.99850 * 270.00002 * 9 6 5 11 11 H 1.07995 * 119.99415 * 128.68410 * 10 9 6 12 12 C 1.38813 * 120.00117 * 308.68318 * 10 9 6 13 13 N 1.31619 * 119.99590 * 333.64837 * 12 10 9 14 14 Si 1.86796 * 120.00102 * 153.64780 * 12 10 9 15 15 H 1.48505 * 109.46861 * 59.99916 * 14 12 10 16 16 H 1.48494 * 109.47174 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47376 * 300.00206 * 14 12 10 18 18 C 1.46491 * 119.99897 * 90.00149 * 9 6 5 19 19 C 1.54968 * 110.92438 * 125.32353 * 18 9 6 20 20 C 1.54268 * 104.16020 * 156.29749 * 19 18 9 21 21 C 1.53879 * 106.63897 * 336.44428 * 20 19 18 22 22 C 1.54262 * 106.60011 * 359.97438 * 21 20 19 23 23 C 1.53000 * 109.46978 * 150.74034 * 3 2 1 24 24 C 1.53000 * 109.47345 * 179.97438 * 23 3 2 25 25 C 1.52999 * 109.47319 * 300.00486 * 23 3 2 26 26 H 1.08995 * 109.47110 * 64.61762 * 1 2 3 27 27 H 1.08998 * 109.46870 * 184.61366 * 1 2 3 28 28 H 1.09000 * 109.47435 * 304.61035 * 1 2 3 29 29 H 1.08999 * 109.47433 * 177.33842 * 5 3 2 30 30 H 1.08999 * 109.47270 * 57.33046 * 5 3 2 31 31 H 0.97007 * 119.99759 * 180.02562 * 13 12 10 32 32 H 1.09006 * 110.67359 * 2.01795 * 18 9 6 33 33 H 1.08999 * 110.47316 * 37.64244 * 19 18 9 34 34 H 1.08997 * 110.52967 * 274.97007 * 19 18 9 35 35 H 1.09001 * 110.02947 * 217.14403 * 20 19 18 36 36 H 1.08995 * 110.03852 * 95.75371 * 20 19 18 37 37 H 1.09000 * 110.03271 * 119.26716 * 21 20 19 38 38 H 1.09005 * 110.03384 * 240.64538 * 21 20 19 39 39 H 1.09007 * 110.48877 * 142.28732 * 22 21 20 40 40 H 1.09003 * 110.49323 * 264.80175 * 22 21 20 41 41 H 1.09002 * 109.46639 * 60.00018 * 23 3 2 42 42 H 1.08994 * 109.47239 * 300.00606 * 24 23 3 43 43 H 1.09002 * 109.47048 * 60.00501 * 24 23 3 44 44 H 1.08997 * 109.47209 * 180.02562 * 24 23 3 45 45 H 1.08994 * 109.47656 * 59.99480 * 25 23 3 46 46 H 1.09001 * 109.46770 * 179.97438 * 25 23 3 47 47 H 1.09002 * 109.46883 * 299.99382 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3511 1.9966 0.5254 5 6 2.2005 1.7791 -1.4423 6 16 3.3594 0.6734 -2.2938 7 8 2.8557 -0.6551 -2.3164 8 8 4.6947 0.9439 -1.8900 9 7 3.3053 1.1577 -3.8766 10 6 2.4014 0.5913 -4.7353 11 1 1.7579 1.2196 -5.3333 12 6 2.3123 -0.7902 -4.8372 13 7 3.3576 -1.5394 -4.5575 14 14 0.7088 -1.5858 -5.3714 15 1 0.3436 -1.1017 -6.7269 16 1 0.8742 -3.0612 -5.4010 17 1 -0.3658 -1.2269 -4.4114 18 6 4.2244 2.1918 -4.3580 19 6 5.0259 1.6917 -5.5863 20 6 5.4418 2.9848 -6.3176 21 6 4.4347 4.0706 -5.8996 22 6 3.4409 3.3999 -4.9290 23 6 3.3673 1.2596 0.7051 24 6 3.9898 2.6572 0.7045 25 6 3.1770 0.7860 2.1474 26 1 -0.3633 0.4405 -0.9284 27 1 -0.3633 -1.0243 0.0827 28 1 -0.3634 0.5837 0.8458 29 1 2.5997 2.7934 -1.4421 30 1 1.2406 1.7665 -1.9586 31 1 3.2954 -2.5049 -4.6291 32 1 4.8975 2.5095 -3.5615 33 1 4.3955 1.0763 -6.2281 34 1 5.9064 1.1342 -5.2670 35 1 5.4010 2.8332 -7.3963 36 1 6.4491 3.2751 -6.0193 37 1 4.9533 4.8875 -5.3977 38 1 3.9060 4.4467 -6.7756 39 1 3.1650 4.0879 -4.1297 40 1 2.5532 3.0629 -5.4643 41 1 4.0264 0.5684 0.1797 42 1 4.1254 2.9942 -0.3231 43 1 3.3308 3.3487 1.2297 44 1 4.9568 2.6244 1.2064 45 1 2.7337 -0.2097 2.1474 46 1 4.1439 0.7529 2.6495 47 1 2.5178 1.4771 2.6728 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592033478.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:15 Heat of formation + Delta-G solvation = -143.573823 kcal Electronic energy + Delta-G solvation = -28136.570825 eV Core-core repulsion = 24445.724655 eV Total energy + Delta-G solvation = -3690.846170 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -39.84291 -39.25377 -37.46518 -36.25083 -35.99808 -35.57256 -33.15329 -31.27376 -29.35781 -28.33852 -28.28303 -27.37028 -26.04992 -24.41368 -21.42784 -21.33254 -20.90131 -20.43236 -18.62805 -17.86311 -17.63461 -17.14602 -16.71726 -16.37015 -16.17517 -16.01131 -15.75113 -15.57961 -15.19311 -14.36478 -14.29794 -14.05648 -14.00124 -13.71235 -13.58253 -13.36227 -13.21462 -13.14918 -12.96625 -12.83650 -12.43252 -12.36502 -12.29562 -12.20259 -12.04508 -12.03026 -11.94211 -11.86046 -11.78280 -11.73930 -11.61918 -11.19729 -11.05987 -10.85641 -10.64157 -10.42688 -9.31220 -8.31402 -5.99717 0.05489 1.46308 1.54023 1.57165 2.36581 2.67455 2.75075 3.11559 3.54660 3.59704 3.79669 3.91283 3.97754 3.99683 4.04623 4.17390 4.31304 4.31646 4.43109 4.48767 4.52419 4.59134 4.62115 4.75290 4.77836 4.80142 4.84719 4.87614 4.90785 4.91957 4.94402 5.01169 5.15080 5.17874 5.23369 5.24961 5.29231 5.40065 5.44741 5.53050 5.60532 5.69260 6.03474 6.20509 6.39241 7.16406 7.59562 8.73685 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.011908 B = 0.007262 C = 0.005227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.811509 B = 3854.563761 C = 5355.294682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.402 6.402 3 C 0.110 3.890 4 H 0.100 0.900 5 C -0.679 4.679 6 S 2.519 3.481 7 O -0.970 6.970 8 O -1.035 7.035 9 N -0.830 5.830 10 C -0.299 4.299 11 H 0.092 0.908 12 C 0.027 3.973 13 N -0.822 5.822 14 Si 0.961 3.039 15 H -0.250 1.250 16 H -0.292 1.292 17 H -0.268 1.268 18 C 0.136 3.864 19 C -0.116 4.116 20 C -0.117 4.117 21 C -0.112 4.112 22 C -0.131 4.131 23 C -0.127 4.127 24 C -0.141 4.141 25 C -0.135 4.135 26 H 0.037 0.963 27 H 0.090 0.910 28 H 0.071 0.929 29 H 0.138 0.862 30 H 0.122 0.878 31 H 0.268 0.732 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.031 0.969 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.039 0.961 42 H 0.047 0.953 43 H 0.086 0.914 44 H 0.070 0.930 45 H 0.050 0.950 46 H 0.067 0.933 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.196 11.330 4.907 13.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.321 6.321 3 C 0.051 3.949 4 H 0.118 0.882 5 C -0.803 4.803 6 S 2.622 3.378 7 O -0.959 6.959 8 O -1.025 7.025 9 N -0.655 5.655 10 C -0.442 4.442 11 H 0.110 0.890 12 C -0.187 4.187 13 N -0.457 5.457 14 Si 0.784 3.216 15 H -0.174 1.174 16 H -0.217 1.217 17 H -0.193 1.193 18 C 0.028 3.972 19 C -0.156 4.156 20 C -0.155 4.155 21 C -0.150 4.150 22 C -0.170 4.170 23 C -0.145 4.145 24 C -0.198 4.198 25 C -0.193 4.193 26 H 0.056 0.944 27 H 0.108 0.892 28 H 0.089 0.911 29 H 0.156 0.844 30 H 0.141 0.859 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.050 0.950 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.057 0.943 42 H 0.066 0.934 43 H 0.105 0.895 44 H 0.089 0.911 45 H 0.069 0.931 46 H 0.086 0.914 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.430 10.361 5.520 12.231 hybrid contribution -0.968 -0.526 -0.243 1.128 sum -4.398 9.835 5.278 11.997 Atomic orbital electron populations 1.22990 0.79754 1.03708 1.00832 1.88032 1.21586 1.27685 1.94805 1.21880 0.95906 0.85426 0.91650 0.88247 1.31345 1.20458 1.18753 1.09778 1.10941 0.75349 0.77020 0.74464 1.93413 1.81649 1.35716 1.85104 1.93284 1.37942 1.87294 1.83954 1.52767 1.42405 1.49981 1.20300 1.19040 1.15004 0.89121 1.21081 0.89036 1.26464 0.99370 0.98192 0.94661 1.70034 1.30511 1.06262 1.38869 0.85498 0.79700 0.76978 0.79382 1.17401 1.21748 1.19260 1.21952 0.90548 0.88708 0.95987 1.22443 0.98191 0.97751 0.97172 1.22085 0.99333 0.93997 1.00057 1.22042 0.96419 0.97419 0.99159 1.22693 0.99184 0.95889 0.99255 1.21596 0.94469 0.99688 0.98796 1.21833 1.01547 0.94148 1.02314 1.21714 1.02737 1.01643 0.93158 0.94407 0.89167 0.91079 0.84428 0.85911 0.92211 0.91127 0.92099 0.95030 0.91087 0.91309 0.90472 0.90435 0.91197 0.91198 0.94256 0.93367 0.89545 0.91134 0.93058 0.91402 0.90125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.69 10.87 113.37 1.23 1.92 16 2 O -0.40 -15.64 8.58 -137.78 -1.18 -16.82 16 3 C 0.11 3.80 1.97 30.59 0.06 3.86 16 4 H 0.10 2.65 7.73 -2.39 -0.02 2.64 16 5 C -0.68 -25.86 5.66 71.98 0.41 -25.45 16 6 S 2.52 127.68 4.33 -56.49 -0.24 127.44 16 7 O -0.97 -57.40 13.17 -122.20 -1.61 -59.01 16 8 O -1.03 -56.03 14.39 -127.65 -1.84 -57.87 16 9 N -0.83 -40.54 2.68 -316.72 -0.85 -41.39 16 10 C -0.30 -15.08 7.48 84.03 0.63 -14.45 16 11 H 0.09 4.24 6.88 -2.91 -0.02 4.22 16 12 C 0.03 1.46 3.91 84.86 0.33 1.79 16 13 N -0.82 -48.48 11.80 21.65 0.26 -48.23 16 14 Si 0.96 42.42 29.63 68.60 2.03 44.45 16 15 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 16 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 17 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 18 C 0.14 5.71 3.24 46.31 0.15 5.86 16 19 C -0.12 -4.79 6.37 31.70 0.20 -4.59 16 20 C -0.12 -3.48 6.80 31.32 0.21 -3.27 16 21 C -0.11 -2.95 6.80 31.32 0.21 -2.74 16 22 C -0.13 -4.27 6.38 31.67 0.20 -4.07 16 23 C -0.13 -4.35 2.20 -10.79 -0.02 -4.38 16 24 C -0.14 -4.03 8.72 71.98 0.63 -3.40 16 25 C -0.14 -3.68 9.05 71.98 0.65 -3.03 16 26 H 0.04 1.13 7.85 -2.39 -0.02 1.11 16 27 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 28 H 0.07 1.57 7.98 -2.39 -0.02 1.55 16 29 H 0.14 4.48 6.57 -2.39 -0.02 4.46 16 30 H 0.12 4.51 7.85 -2.39 -0.02 4.49 16 31 H 0.27 15.37 8.31 -92.70 -0.77 14.60 16 32 H 0.07 3.04 6.93 -2.38 -0.02 3.02 16 33 H 0.06 2.80 7.14 -2.39 -0.02 2.78 16 34 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 39 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 40 H 0.07 2.40 6.63 -2.39 -0.02 2.38 16 41 H 0.04 1.72 5.79 -2.39 -0.01 1.70 16 42 H 0.05 1.51 6.16 -2.39 -0.01 1.49 16 43 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.05 1.51 7.68 -2.39 -0.02 1.49 16 46 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 47 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -72.36 368.44 2.39 -69.97 By element: Atomic # 1 Polarization: 32.47 SS G_CDS: 0.93 Total: 33.40 kcal Atomic # 6 Polarization: -56.84 SS G_CDS: 4.90 Total: -51.94 kcal Atomic # 7 Polarization: -89.02 SS G_CDS: -0.59 Total: -89.61 kcal Atomic # 8 Polarization: -129.07 SS G_CDS: -4.63 Total: -133.70 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Atomic # 16 Polarization: 127.68 SS G_CDS: -0.24 Total: 127.44 kcal Total: -72.36 2.39 -69.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592033478.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.604 kcal (2) G-P(sol) polarization free energy of solvation -72.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds