Wall clock time and date at job start Tue Mar 31 2020 12:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47170 * 2 1 4 4 C 1.53000 * 109.47307 * 239.99207 * 2 1 3 5 5 C 1.53005 * 109.46805 * 120.00083 * 2 1 3 6 6 N 1.46498 * 109.47479 * 59.99744 * 5 2 1 7 7 C 1.46500 * 119.99674 * 90.00246 * 6 5 2 8 8 C 1.50700 * 109.47492 * 79.29639 * 7 6 5 9 9 O 1.20827 * 119.99570 * 359.97438 * 8 7 6 10 10 O 1.34224 * 120.00188 * 180.02562 * 8 7 6 11 11 C 1.34775 * 119.99941 * 270.00200 * 6 5 2 12 12 O 1.21545 * 120.00366 * 1.38952 * 11 6 5 13 13 C 1.47893 * 119.99713 * 181.39080 * 11 6 5 14 14 C 1.39920 * 120.02381 * 23.26944 * 13 11 6 15 15 C 1.38331 * 120.35538 * 179.74177 * 14 13 11 16 16 C 1.37748 * 120.41124 * 0.55964 * 15 14 13 17 17 C 1.40758 * 120.04171 * 359.69545 * 16 15 14 18 18 C 1.41438 * 120.17937 * 180.02562 * 17 16 15 19 19 H 1.08004 * 119.99869 * 28.92772 * 18 17 16 20 20 C 1.39933 * 120.00104 * 208.92756 * 18 17 16 21 21 N 1.30831 * 119.99721 * 10.43552 * 20 18 17 22 22 Si 1.86797 * 120.00101 * 190.43188 * 20 18 17 23 23 H 1.48501 * 109.47158 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47167 * 120.00092 * 22 20 18 25 25 H 1.48496 * 109.47395 * 240.00210 * 22 20 18 26 26 C 1.38989 * 120.02424 * 203.54646 * 13 11 6 27 27 H 1.09000 * 109.47265 * 300.00030 * 1 2 3 28 28 H 1.09002 * 109.46891 * 60.00186 * 1 2 3 29 29 H 1.09004 * 109.47323 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46877 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47061 * 299.99710 * 3 2 1 32 32 H 1.09000 * 109.47051 * 59.99839 * 3 2 1 33 33 H 1.08995 * 109.47512 * 300.00832 * 4 2 1 34 34 H 1.09002 * 109.46650 * 60.00459 * 4 2 1 35 35 H 1.08999 * 109.47114 * 179.97438 * 4 2 1 36 36 H 1.09006 * 109.46850 * 299.99688 * 5 2 1 37 37 H 1.09004 * 109.47116 * 180.02562 * 5 2 1 38 38 H 1.09007 * 109.46982 * 319.29085 * 7 6 5 39 39 H 1.09010 * 109.46793 * 199.29758 * 7 6 5 40 40 H 0.96697 * 116.99892 * 179.97438 * 10 8 7 41 41 H 1.08001 * 119.82227 * 359.97438 * 14 13 11 42 42 H 1.08000 * 119.79471 * 180.27740 * 15 14 13 43 43 H 1.08001 * 119.98514 * 179.72003 * 16 15 14 44 44 H 0.97003 * 119.99525 * 180.02562 * 21 20 18 45 45 H 1.08005 * 120.19956 * 359.95113 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0399 -0.7213 1.2493 6 7 1.5515 -2.1025 1.2494 7 6 2.3433 -3.1594 0.6151 8 6 3.4568 -3.5771 1.5407 9 8 3.5770 -3.0460 2.6193 10 8 4.3157 -4.5383 1.1664 11 6 0.3739 -2.4008 1.8329 12 8 -0.2950 -1.5200 2.3370 13 6 -0.1045 -3.8000 1.8600 14 6 0.8082 -4.8543 1.7454 15 6 0.3689 -6.1656 1.7752 16 6 -0.9728 -6.4487 1.9064 17 6 -1.9064 -5.4012 2.0177 18 6 -3.2846 -5.6885 2.1531 19 1 -3.6009 -6.6068 2.6256 20 6 -4.2384 -4.7831 1.6749 21 7 -3.8671 -3.7766 0.9261 22 14 -6.0416 -5.0116 2.1056 23 1 -6.1978 -6.2168 2.9591 24 1 -6.5299 -3.8178 2.8415 25 1 -6.8306 -5.1817 0.8591 26 6 -1.4617 -4.0685 1.9935 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 -1.7490 -1.2491 34 1 1.6767 -0.2076 -2.1392 35 1 3.1300 -0.7210 -1.2493 36 1 1.6765 -0.2074 2.1393 37 1 3.1299 -0.7209 1.2496 38 1 2.7667 -2.7861 -0.3175 39 1 1.7036 -4.0169 0.4061 40 1 5.0136 -4.7719 1.7936 41 1 1.8618 -4.6431 1.6369 42 1 1.0818 -6.9725 1.6905 43 1 -1.3086 -7.4750 1.9244 44 1 -4.5283 -3.1487 0.5949 45 1 -2.1701 -3.2577 2.0785 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595998756.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:04 Heat of formation + Delta-G solvation = -101.521447 kcal Electronic energy + Delta-G solvation = -28277.839036 eV Core-core repulsion = 24453.372443 eV Total energy + Delta-G solvation = -3824.466593 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.22259 -40.69823 -39.23615 -38.05240 -37.13745 -36.14328 -35.27866 -32.16055 -31.37439 -30.10344 -28.24807 -28.13050 -27.50649 -27.01844 -23.90715 -22.96909 -22.84277 -20.76363 -19.78383 -19.36605 -19.14888 -17.99994 -17.85164 -17.55869 -17.13813 -16.76500 -16.14766 -16.04150 -15.50351 -15.26060 -15.06652 -14.79746 -14.62001 -14.32860 -14.23742 -14.03032 -13.71396 -13.48723 -13.17138 -13.01592 -12.90936 -12.81628 -12.59411 -12.52745 -12.46248 -12.34398 -12.20950 -11.98735 -11.92046 -11.79194 -11.63929 -11.57096 -11.41753 -11.13209 -10.68376 -9.86329 -9.47788 -9.36481 -8.64066 -6.42780 0.34230 0.91804 1.12327 1.36898 1.44185 1.52078 1.64999 1.92609 2.18752 2.35944 2.75998 3.53104 3.62899 3.80100 3.88800 3.92666 4.03205 4.29499 4.30903 4.36973 4.43586 4.47400 4.55051 4.71696 4.76018 4.83719 4.87249 4.92000 5.02982 5.04836 5.06942 5.13348 5.16646 5.27178 5.30368 5.39666 5.46875 5.48683 5.55685 5.58578 5.76327 5.87363 6.00983 6.18810 6.27657 6.57103 6.86509 6.90221 6.96670 7.17192 8.31836 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013279 B = 0.004781 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.157910 B = 5855.587694 C = 7423.591314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.081 4.081 3 C -0.132 4.132 4 C -0.144 4.144 5 C 0.129 3.871 6 N -0.584 5.584 7 C 0.073 3.927 8 C 0.468 3.532 9 O -0.540 6.540 10 O -0.501 6.501 11 C 0.567 3.433 12 O -0.568 6.568 13 C -0.137 4.137 14 C -0.229 4.229 15 C -0.091 4.091 16 C -0.211 4.211 17 C 0.072 3.928 18 C -0.494 4.494 19 H 0.084 0.916 20 C 0.029 3.971 21 N -0.830 5.830 22 Si 0.984 3.016 23 H -0.253 1.253 24 H -0.273 1.273 25 H -0.263 1.263 26 C -0.120 4.120 27 H 0.035 0.965 28 H 0.059 0.941 29 H 0.024 0.976 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.047 0.953 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.096 0.904 38 H 0.153 0.847 39 H 0.157 0.843 40 H 0.429 0.571 41 H 0.137 0.863 42 H 0.140 0.860 43 H 0.112 0.888 44 H 0.285 0.715 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.736 2.965 -6.538 16.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.082 4.082 3 C -0.189 4.189 4 C -0.201 4.201 5 C 0.007 3.993 6 N -0.315 5.315 7 C -0.051 4.051 8 C 0.310 3.690 9 O -0.430 6.430 10 O -0.315 6.315 11 C 0.359 3.641 12 O -0.448 6.448 13 C -0.141 4.141 14 C -0.248 4.248 15 C -0.109 4.109 16 C -0.231 4.231 17 C 0.070 3.930 18 C -0.524 4.524 19 H 0.102 0.898 20 C -0.185 4.185 21 N -0.456 5.456 22 Si 0.805 3.195 23 H -0.176 1.176 24 H -0.198 1.198 25 H -0.187 1.187 26 C -0.140 4.140 27 H 0.054 0.946 28 H 0.078 0.922 29 H 0.043 0.957 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.114 0.886 38 H 0.171 0.829 39 H 0.174 0.826 40 H 0.291 0.709 41 H 0.154 0.846 42 H 0.158 0.842 43 H 0.130 0.870 44 H 0.096 0.904 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 14.045 3.881 -6.387 15.909 hybrid contribution -0.800 -0.063 0.942 1.238 sum 13.244 3.817 -5.445 14.820 Atomic orbital electron populations 1.21761 0.95906 1.00195 1.00562 1.20975 0.94777 0.97020 0.95471 1.21757 1.01807 0.93195 1.02183 1.22010 1.01870 1.00088 0.96149 1.21661 0.99209 0.80076 0.98345 1.47302 1.19043 1.08560 1.56569 1.22441 0.91860 0.95679 0.95108 1.24005 0.82220 0.76389 0.86364 1.90753 1.72804 1.54832 1.24619 1.84491 1.42286 1.52355 1.52337 1.18731 0.80408 0.88641 0.76290 1.90670 1.56807 1.50062 1.47285 1.19763 0.95000 0.92056 1.07251 1.21505 0.98283 0.92391 1.12583 1.20940 0.95262 0.96078 0.98581 1.21468 0.93776 0.98063 1.09744 1.17964 0.94291 0.91329 0.89458 1.19903 0.91113 1.05799 1.35546 0.89829 1.26799 1.06231 0.93262 0.92228 1.69856 1.38186 1.12414 1.25143 0.85125 0.75782 0.79421 0.79222 1.17603 1.19769 1.18747 1.21412 0.92951 0.97504 1.02171 0.94622 0.92185 0.95717 0.90611 0.91258 0.93424 0.93008 0.91535 0.90184 0.92383 0.88578 0.82933 0.82622 0.70859 0.84567 0.84208 0.86958 0.90409 0.88212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.17 7.12 71.98 0.51 -3.66 16 2 C -0.08 -2.01 0.84 -52.18 -0.04 -2.06 16 3 C -0.13 -2.52 8.47 71.98 0.61 -1.91 16 4 C -0.14 -2.80 7.26 71.98 0.52 -2.27 16 5 C 0.13 3.73 4.32 86.38 0.37 4.11 16 6 N -0.58 -19.65 1.57 -829.48 -1.30 -20.95 16 7 C 0.07 1.89 4.69 85.63 0.40 2.30 16 8 C 0.47 11.82 6.20 71.24 0.44 12.26 16 9 O -0.54 -17.77 16.96 21.96 0.37 -17.39 16 10 O -0.50 -8.52 13.42 -51.36 -0.69 -9.21 16 11 C 0.57 25.55 5.97 86.80 0.52 26.07 16 12 O -0.57 -29.46 14.23 -3.86 -0.05 -29.51 16 13 C -0.14 -6.57 5.61 -20.13 -0.11 -6.69 16 14 C -0.23 -9.15 7.53 22.70 0.17 -8.98 16 15 C -0.09 -3.55 10.01 22.18 0.22 -3.33 16 16 C -0.21 -9.66 9.78 22.77 0.22 -9.44 16 17 C 0.07 3.86 5.55 -21.32 -0.12 3.74 16 18 C -0.49 -26.60 9.06 23.47 0.21 -26.39 16 19 H 0.08 4.26 7.87 -2.91 -0.02 4.24 16 20 C 0.03 1.49 5.26 85.25 0.45 1.93 16 21 N -0.83 -45.31 10.83 21.82 0.24 -45.07 16 22 Si 0.98 39.42 29.57 68.60 2.03 41.45 16 23 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 24 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 25 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 26 C -0.12 -6.62 8.19 23.01 0.19 -6.43 16 27 H 0.03 1.31 7.70 -2.39 -0.02 1.30 16 28 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.02 0.97 6.13 -2.38 -0.01 0.95 16 30 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.05 1.12 5.80 -2.39 -0.01 1.11 16 34 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.08 1.12 8.13 -2.39 -0.02 1.10 16 36 H 0.06 2.01 7.44 -2.38 -0.02 1.99 16 37 H 0.10 2.27 8.05 -2.39 -0.02 2.25 16 38 H 0.15 2.75 5.64 -2.38 -0.01 2.74 16 39 H 0.16 4.49 4.20 -2.41 -0.01 4.48 16 40 H 0.43 3.70 9.10 -74.06 -0.67 3.02 16 41 H 0.14 4.51 2.65 -2.91 -0.01 4.50 16 42 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 43 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 44 H 0.29 14.34 8.30 -92.71 -0.77 13.57 16 45 H 0.10 6.15 5.98 -2.91 -0.02 6.13 16 Total: -1.00 -72.96 357.57 5.52 -67.44 By element: Atomic # 1 Polarization: 33.65 SS G_CDS: 0.36 Total: 34.01 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: 4.57 Total: -20.76 kcal Atomic # 7 Polarization: -64.96 SS G_CDS: -1.07 Total: -66.02 kcal Atomic # 8 Polarization: -55.75 SS G_CDS: -0.37 Total: -56.12 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 2.03 Total: 41.45 kcal Total: -72.96 5.52 -67.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595998756.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.077 kcal (2) G-P(sol) polarization free energy of solvation -72.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds