Wall clock time and date at job start Tue Mar 31 2020 12:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47093 * 2 1 4 4 C 1.52997 * 109.47203 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47544 * 179.97438 * 4 3 2 6 6 H 1.09003 * 109.46883 * 305.00050 * 5 4 3 7 7 N 1.46502 * 109.47135 * 64.99397 * 5 4 3 8 8 C 1.34783 * 120.00075 * 205.00362 * 7 5 4 9 9 O 1.21608 * 119.99981 * 0.02562 * 8 7 5 10 10 C 1.47429 * 119.99903 * 180.02562 * 8 7 5 11 11 C 1.39228 * 120.28278 * 355.09941 * 10 8 7 12 12 C 1.38220 * 120.09304 * 180.02562 * 11 10 8 13 13 C 1.38830 * 120.67183 * 0.02562 * 12 11 10 14 14 C 1.37594 * 120.57595 * 0.02562 * 13 12 11 15 15 C 1.40709 * 119.87718 * 359.67588 * 14 13 12 16 16 C 1.40890 * 120.32954 * 180.30031 * 15 14 13 17 17 H 1.07997 * 120.00101 * 141.59418 * 16 15 14 18 18 C 1.40272 * 119.99702 * 321.59140 * 16 15 14 19 19 N 1.30632 * 120.00045 * 174.28528 * 18 16 15 20 20 Si 1.86807 * 120.00245 * 354.28891 * 18 16 15 21 21 H 1.48497 * 109.46956 * 89.40676 * 20 18 16 22 22 H 1.48499 * 109.47172 * 209.41067 * 20 18 16 23 23 H 1.48504 * 109.46837 * 329.40950 * 20 18 16 24 24 C 1.50697 * 109.47610 * 184.99681 * 5 4 3 25 25 O 1.20826 * 120.00023 * 240.00206 * 24 5 4 26 26 O 1.34225 * 120.00081 * 59.71973 * 24 5 4 27 27 C 1.45199 * 117.00516 * 180.27565 * 26 24 5 28 28 H 1.08998 * 109.47445 * 60.00188 * 1 2 3 29 29 H 1.09001 * 109.47022 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46782 * 300.00189 * 1 2 3 31 31 H 1.08996 * 109.47054 * 239.99847 * 2 1 3 32 32 H 1.08998 * 109.47445 * 119.99812 * 2 1 3 33 33 H 1.08996 * 109.47295 * 59.99995 * 3 2 1 34 34 H 1.09007 * 109.47074 * 300.00246 * 3 2 1 35 35 H 1.08996 * 109.47434 * 59.99547 * 4 3 2 36 36 H 1.09011 * 109.46898 * 299.99348 * 4 3 2 37 37 H 0.97003 * 120.00002 * 25.00121 * 7 5 4 38 38 H 1.07996 * 119.95331 * 0.02562 * 11 10 8 39 39 H 1.07997 * 119.66638 * 180.02562 * 12 11 10 40 40 H 1.08001 * 119.70985 * 179.97438 * 13 12 11 41 41 H 1.07999 * 120.06121 * 180.02562 * 14 13 12 42 42 H 0.97002 * 120.00213 * 180.02562 * 19 18 16 43 43 H 1.08997 * 109.46866 * 60.00119 * 27 26 24 44 44 H 1.08992 * 109.47625 * 180.02562 * 27 26 24 45 45 H 1.09004 * 109.46660 * 300.00848 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 -0.0013 6 1 3.6450 3.4237 -0.8431 7 7 3.6929 3.5404 1.2504 8 6 3.5661 4.8814 1.2978 9 8 3.7726 5.5473 0.3014 10 6 3.1771 5.5410 2.5576 11 6 2.8405 4.7799 3.6738 12 6 2.4758 5.4023 4.8528 13 6 2.4395 6.7874 4.9406 14 6 2.7657 7.5663 3.8543 15 6 3.1464 6.9575 2.6442 16 6 3.4885 7.7460 1.5278 17 1 4.3000 7.4446 0.8821 18 6 2.7749 8.9224 1.2550 19 7 3.1611 9.7112 0.2880 20 14 1.2725 9.3613 2.2747 21 1 1.6901 10.1673 3.4499 22 1 0.3246 10.1487 1.4460 23 1 0.6084 8.1167 2.7387 24 6 5.5819 2.8868 -0.1257 25 8 6.2593 3.3844 0.7422 26 8 6.1672 2.3305 -1.1979 27 6 7.6179 2.3632 -1.2482 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6766 1.9563 -0.8900 35 1 3.9330 0.9288 -0.8908 36 1 3.9337 0.9286 0.8893 37 1 3.5278 3.0092 2.0452 38 1 2.8644 3.7016 3.6183 39 1 2.2165 4.8052 5.7145 40 1 2.1519 7.2575 5.8694 41 1 2.7351 8.6431 3.9319 42 1 2.6679 10.5249 0.0995 43 1 8.0233 1.8341 -0.3859 44 1 7.9607 1.8821 -2.1642 45 1 7.9587 3.3984 -1.2324 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601443517.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:42 Heat of formation + Delta-G solvation = -114.635895 kcal Electronic energy + Delta-G solvation = -27263.075824 eV Core-core repulsion = 23438.040545 eV Total energy + Delta-G solvation = -3825.035279 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.51018 -39.00580 -37.34839 -36.24258 -36.13632 -34.05008 -33.49862 -31.31956 -30.46326 -29.62164 -28.24774 -26.44176 -25.24793 -22.96941 -22.54028 -21.36386 -21.08600 -20.30448 -19.64552 -17.64893 -17.46518 -16.87850 -16.58372 -16.14100 -15.77764 -15.30177 -14.99168 -14.19843 -14.13574 -14.08110 -13.79834 -13.64726 -13.37347 -13.15382 -13.02338 -12.72753 -12.64566 -12.38766 -12.06125 -11.96025 -11.75609 -11.53123 -11.30884 -11.29413 -11.00700 -10.92355 -10.72143 -10.68808 -10.64036 -10.45249 -10.24679 -10.09316 -9.78320 -9.26147 -8.65495 -8.56913 -7.82764 -7.59085 -6.86590 -4.45763 2.07408 2.42524 2.60135 2.73991 3.09959 3.18682 3.29279 3.75404 3.97141 4.02091 4.48568 4.60400 4.79332 4.82643 5.06457 5.11183 5.13541 5.15005 5.22185 5.38109 5.42501 5.52489 5.62458 5.64022 5.72520 5.76167 5.78132 5.85863 5.94457 6.04064 6.04558 6.16637 6.27346 6.35631 6.48322 6.50234 6.78551 6.87375 7.10526 7.22034 7.37700 7.56981 7.73097 7.96359 8.00576 8.21316 8.48926 8.62670 8.84478 9.26411 10.11838 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.010885 B = 0.004380 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.784662 B = 6391.664628 C = 7381.517150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.121 4.121 4 C -0.119 4.119 5 C 0.164 3.836 6 H 0.124 0.876 7 N -0.725 5.725 8 C 0.568 3.432 9 O -0.520 6.520 10 C -0.244 4.244 11 C -0.041 4.041 12 C -0.251 4.251 13 C -0.065 4.065 14 C -0.225 4.225 15 C 0.119 3.881 16 C -0.396 4.396 17 H 0.114 0.886 18 C 0.078 3.922 19 N -0.797 5.797 20 Si 0.909 3.091 21 H -0.268 1.268 22 H -0.290 1.290 23 H -0.242 1.242 24 C 0.444 3.556 25 O -0.490 6.490 26 O -0.363 6.363 27 C 0.036 3.964 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.398 0.602 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.106 0.894 42 H 0.286 0.714 43 H 0.059 0.941 44 H 0.098 0.902 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.343 -16.818 -1.032 16.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.158 4.158 4 C -0.157 4.157 5 C 0.055 3.945 6 H 0.142 0.858 7 N -0.381 5.381 8 C 0.362 3.638 9 O -0.396 6.396 10 C -0.249 4.249 11 C -0.060 4.060 12 C -0.270 4.270 13 C -0.084 4.084 14 C -0.244 4.244 15 C 0.114 3.886 16 C -0.423 4.423 17 H 0.132 0.868 18 C -0.141 4.141 19 N -0.421 5.421 20 Si 0.735 3.265 21 H -0.195 1.195 22 H -0.217 1.217 23 H -0.166 1.166 24 C 0.284 3.716 25 O -0.375 6.375 26 O -0.280 6.280 27 C -0.059 4.059 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.233 0.767 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.123 0.877 42 H 0.097 0.903 43 H 0.078 0.922 44 H 0.116 0.884 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.936 -15.919 -1.716 16.039 hybrid contribution -0.306 0.170 0.867 0.935 sum -1.242 -15.749 -0.849 15.821 Atomic orbital electron populations 1.21776 0.95847 1.01349 1.02136 1.21512 0.95948 0.96670 1.01889 1.21635 0.93717 0.96986 1.03477 1.21832 0.97027 0.93004 1.03839 1.20318 0.86211 0.96005 0.91939 0.85806 1.45853 1.72749 1.08021 1.11473 1.18399 0.76072 0.80125 0.89249 1.90774 1.49436 1.62874 1.36537 1.19359 1.18748 0.93887 0.92867 1.20773 0.95455 0.96904 0.92840 1.20294 1.14828 0.94173 0.97753 1.20745 0.96735 0.93961 0.96948 1.21180 1.11013 0.98367 0.93810 1.17548 0.87963 0.90543 0.92504 1.19949 1.13910 1.00903 1.07582 0.86820 1.26309 0.99045 0.94013 0.94742 1.69552 1.37091 1.09995 1.25474 0.86385 0.80928 0.80103 0.79067 1.19452 1.21713 1.16569 1.24719 0.93029 0.74587 0.79282 1.90686 1.65360 1.40890 1.40517 1.86488 1.23609 1.73115 1.44764 1.23203 0.76994 1.02902 1.02755 0.92665 0.92998 0.92573 0.92041 0.92088 0.91029 0.91267 0.89323 0.91014 0.76679 0.88683 0.88452 0.88505 0.87664 0.90315 0.92226 0.88373 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 37.16 0.37 -0.88 16 2 C -0.12 -1.00 5.93 -26.73 -0.16 -1.16 16 3 C -0.12 -1.19 5.10 -26.73 -0.14 -1.33 16 4 C -0.12 -1.23 4.72 -26.73 -0.13 -1.36 16 5 C 0.16 2.46 2.48 -69.08 -0.17 2.29 16 6 H 0.12 1.99 7.58 -51.93 -0.39 1.60 16 7 N -0.73 -12.58 4.01 -56.01 -0.22 -12.80 16 8 C 0.57 13.03 7.55 -12.52 -0.09 12.94 16 9 O -0.52 -13.96 13.33 5.27 0.07 -13.89 16 10 C -0.24 -5.78 5.92 -104.37 -0.62 -6.40 16 11 C -0.04 -0.82 9.52 -39.22 -0.37 -1.19 16 12 C -0.25 -4.93 10.03 -39.37 -0.39 -5.33 16 13 C -0.07 -1.36 10.01 -39.60 -0.40 -1.76 16 14 C -0.22 -5.36 6.93 -38.88 -0.27 -5.63 16 15 C 0.12 3.11 5.04 -106.54 -0.54 2.57 16 16 C -0.40 -11.32 8.08 -37.81 -0.31 -11.62 16 17 H 0.11 3.63 6.37 -52.49 -0.33 3.29 16 18 C 0.08 2.13 5.51 -17.30 -0.10 2.03 16 19 N -0.80 -22.07 13.92 55.56 0.77 -21.29 16 20 Si 0.91 20.96 24.48 -169.99 -4.16 16.80 16 21 H -0.27 -5.89 6.70 56.52 0.38 -5.51 16 22 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 23 H -0.24 -5.69 6.67 56.52 0.38 -5.31 16 24 C 0.44 7.48 7.29 36.00 0.26 7.75 16 25 O -0.49 -10.05 16.07 -18.75 -0.30 -10.35 16 26 O -0.36 -5.16 10.36 -39.24 -0.41 -5.56 16 27 C 0.04 0.40 10.56 101.05 1.07 1.47 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.78 7.75 -51.93 -0.40 0.38 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.09 0.80 7.99 -51.93 -0.41 0.39 16 36 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 37 H 0.40 5.86 6.66 -40.82 -0.27 5.59 16 38 H 0.10 1.53 6.42 -52.49 -0.34 1.19 16 39 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 40 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 41 H 0.11 2.47 4.88 -52.49 -0.26 2.21 16 42 H 0.29 7.11 8.29 -40.82 -0.34 6.78 16 43 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 44 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.06 0.79 8.13 -51.93 -0.42 0.36 16 LS Contribution 370.71 15.07 5.59 5.59 Total: -1.00 -33.16 370.71 -7.31 -40.47 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -6.66 Total: 8.64 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -1.98 Total: -7.60 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 0.55 Total: -34.09 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.64 Total: -29.80 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.16 Total: 16.80 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.16 -7.31 -40.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601443517.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.170 kcal (2) G-P(sol) polarization free energy of solvation -33.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds