Wall clock time and date at job start Tue Mar 31 2020 12:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47093 * 2 1 4 4 C 1.52997 * 109.47203 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47544 * 179.97438 * 4 3 2 6 6 H 1.09003 * 109.46883 * 305.00050 * 5 4 3 7 7 N 1.46502 * 109.47135 * 64.99397 * 5 4 3 8 8 C 1.34783 * 120.00075 * 205.00362 * 7 5 4 9 9 O 1.21608 * 119.99981 * 0.02562 * 8 7 5 10 10 C 1.47429 * 119.99903 * 180.02562 * 8 7 5 11 11 C 1.39228 * 120.28278 * 355.09941 * 10 8 7 12 12 C 1.38220 * 120.09304 * 180.02562 * 11 10 8 13 13 C 1.38830 * 120.67183 * 0.02562 * 12 11 10 14 14 C 1.37594 * 120.57595 * 0.02562 * 13 12 11 15 15 C 1.40709 * 119.87718 * 359.67588 * 14 13 12 16 16 C 1.40890 * 120.32954 * 180.30031 * 15 14 13 17 17 H 1.07997 * 120.00101 * 141.59418 * 16 15 14 18 18 C 1.40272 * 119.99702 * 321.59140 * 16 15 14 19 19 N 1.30632 * 120.00045 * 174.28528 * 18 16 15 20 20 Si 1.86807 * 120.00245 * 354.28891 * 18 16 15 21 21 H 1.48497 * 109.46956 * 89.40676 * 20 18 16 22 22 H 1.48499 * 109.47172 * 209.41067 * 20 18 16 23 23 H 1.48504 * 109.46837 * 329.40950 * 20 18 16 24 24 C 1.50697 * 109.47610 * 184.99681 * 5 4 3 25 25 O 1.20826 * 120.00023 * 240.00206 * 24 5 4 26 26 O 1.34225 * 120.00081 * 59.71973 * 24 5 4 27 27 C 1.45199 * 117.00516 * 180.27565 * 26 24 5 28 28 H 1.08998 * 109.47445 * 60.00188 * 1 2 3 29 29 H 1.09001 * 109.47022 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46782 * 300.00189 * 1 2 3 31 31 H 1.08996 * 109.47054 * 239.99847 * 2 1 3 32 32 H 1.08998 * 109.47445 * 119.99812 * 2 1 3 33 33 H 1.08996 * 109.47295 * 59.99995 * 3 2 1 34 34 H 1.09007 * 109.47074 * 300.00246 * 3 2 1 35 35 H 1.08996 * 109.47434 * 59.99547 * 4 3 2 36 36 H 1.09011 * 109.46898 * 299.99348 * 4 3 2 37 37 H 0.97003 * 120.00002 * 25.00121 * 7 5 4 38 38 H 1.07996 * 119.95331 * 0.02562 * 11 10 8 39 39 H 1.07997 * 119.66638 * 180.02562 * 12 11 10 40 40 H 1.08001 * 119.70985 * 179.97438 * 13 12 11 41 41 H 1.07999 * 120.06121 * 180.02562 * 14 13 12 42 42 H 0.97002 * 120.00213 * 180.02562 * 19 18 16 43 43 H 1.08997 * 109.46866 * 60.00119 * 27 26 24 44 44 H 1.08992 * 109.47625 * 180.02562 * 27 26 24 45 45 H 1.09004 * 109.46660 * 300.00848 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 -0.0013 6 1 3.6450 3.4237 -0.8431 7 7 3.6929 3.5404 1.2504 8 6 3.5661 4.8814 1.2978 9 8 3.7726 5.5473 0.3014 10 6 3.1771 5.5410 2.5576 11 6 2.8405 4.7799 3.6738 12 6 2.4758 5.4023 4.8528 13 6 2.4395 6.7874 4.9406 14 6 2.7657 7.5663 3.8543 15 6 3.1464 6.9575 2.6442 16 6 3.4885 7.7460 1.5278 17 1 4.3000 7.4446 0.8821 18 6 2.7749 8.9224 1.2550 19 7 3.1611 9.7112 0.2880 20 14 1.2725 9.3613 2.2747 21 1 1.6901 10.1673 3.4499 22 1 0.3246 10.1487 1.4460 23 1 0.6084 8.1167 2.7387 24 6 5.5819 2.8868 -0.1257 25 8 6.2593 3.3844 0.7422 26 8 6.1672 2.3305 -1.1979 27 6 7.6179 2.3632 -1.2482 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6766 1.9563 -0.8900 35 1 3.9330 0.9288 -0.8908 36 1 3.9337 0.9286 0.8893 37 1 3.5278 3.0092 2.0452 38 1 2.8644 3.7016 3.6183 39 1 2.2165 4.8052 5.7145 40 1 2.1519 7.2575 5.8694 41 1 2.7351 8.6431 3.9319 42 1 2.6679 10.5249 0.0995 43 1 8.0233 1.8341 -0.3859 44 1 7.9607 1.8821 -2.1642 45 1 7.9587 3.3984 -1.2324 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601443517.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:41 Heat of formation + Delta-G solvation = -136.228709 kcal Electronic energy + Delta-G solvation = -27264.012158 eV Core-core repulsion = 23438.040545 eV Total energy + Delta-G solvation = -3825.971613 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.88679 -40.67324 -38.94411 -37.64568 -37.31565 -35.63803 -35.03908 -32.73479 -32.30646 -31.06816 -29.26131 -27.64717 -26.96779 -24.26900 -23.86458 -23.07276 -21.85042 -21.69927 -21.31371 -19.48603 -18.84700 -18.44875 -17.96461 -17.46964 -17.16135 -16.79371 -16.13580 -15.90596 -15.79339 -15.42957 -15.32894 -14.84706 -14.60821 -14.47437 -14.28334 -14.22778 -13.97834 -13.80599 -13.52000 -13.29139 -13.05382 -12.72665 -12.68591 -12.54442 -12.23461 -12.21385 -12.07303 -11.99462 -11.86134 -11.81035 -11.61469 -11.45892 -11.35947 -11.09718 -10.45178 -10.22029 -9.55000 -9.42667 -8.81126 -6.49103 0.30822 0.82578 1.07295 1.23511 1.36083 1.45998 1.51056 2.10462 2.26143 2.35586 2.71399 3.46604 3.50991 3.79499 3.93705 4.13688 4.18333 4.22309 4.25356 4.26835 4.31022 4.41380 4.43380 4.58635 4.63119 4.70910 4.79892 4.83803 4.85460 4.97887 5.02202 5.08239 5.18538 5.24580 5.29780 5.35979 5.38761 5.43760 5.48318 5.57117 5.66180 5.83750 5.92898 6.24563 6.43139 6.59814 6.64296 6.75777 6.82705 7.53060 8.25162 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.010885 B = 0.004380 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.784662 B = 6391.664628 C = 7381.517150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.117 4.117 3 C -0.119 4.119 4 C -0.104 4.104 5 C 0.160 3.840 6 H 0.108 0.892 7 N -0.704 5.704 8 C 0.562 3.438 9 O -0.571 6.571 10 C -0.263 4.263 11 C -0.040 4.040 12 C -0.225 4.225 13 C -0.061 4.061 14 C -0.246 4.246 15 C 0.101 3.899 16 C -0.444 4.444 17 H 0.055 0.945 18 C 0.033 3.967 19 N -0.857 5.857 20 Si 0.972 3.028 21 H -0.248 1.248 22 H -0.281 1.281 23 H -0.246 1.246 24 C 0.445 3.555 25 O -0.534 6.534 26 O -0.357 6.357 27 C 0.028 3.972 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.413 0.587 38 H 0.141 0.859 39 H 0.148 0.852 40 H 0.139 0.861 41 H 0.104 0.896 42 H 0.292 0.708 43 H 0.067 0.933 44 H 0.141 0.859 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.987 -20.516 2.008 20.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.155 4.155 3 C -0.157 4.157 4 C -0.142 4.142 5 C 0.052 3.948 6 H 0.126 0.874 7 N -0.360 5.360 8 C 0.355 3.645 9 O -0.451 6.451 10 C -0.268 4.268 11 C -0.058 4.058 12 C -0.244 4.244 13 C -0.079 4.079 14 C -0.265 4.265 15 C 0.097 3.903 16 C -0.474 4.474 17 H 0.073 0.927 18 C -0.179 4.179 19 N -0.484 5.484 20 Si 0.794 3.206 21 H -0.172 1.172 22 H -0.208 1.208 23 H -0.170 1.170 24 C 0.287 3.713 25 O -0.423 6.423 26 O -0.272 6.272 27 C -0.065 4.065 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.127 0.873 36 H 0.109 0.891 37 H 0.252 0.748 38 H 0.159 0.841 39 H 0.165 0.835 40 H 0.157 0.843 41 H 0.121 0.879 42 H 0.102 0.898 43 H 0.086 0.914 44 H 0.158 0.842 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.574 -19.689 1.335 19.902 hybrid contribution 0.301 0.965 0.046 1.012 sum -2.273 -18.724 1.381 18.912 Atomic orbital electron populations 1.21794 0.95972 1.01956 1.01605 1.21476 0.95789 0.95207 1.02984 1.21624 0.93194 0.98311 1.02573 1.21846 0.97233 0.89387 1.05741 1.20612 0.85438 0.98601 0.90171 0.87405 1.45539 1.71117 1.06267 1.13058 1.18568 0.75578 0.81739 0.88605 1.90770 1.51615 1.64552 1.38163 1.19802 1.18534 0.93792 0.94650 1.21245 0.93849 0.99142 0.91606 1.20980 1.10562 0.94151 0.98669 1.21279 0.94652 0.94684 0.97290 1.21285 1.12286 0.98909 0.93972 1.17815 0.88160 0.91731 0.92587 1.19661 1.15211 1.03477 1.09015 0.92671 1.27091 1.01573 0.93512 0.95761 1.69620 1.39353 1.11342 1.28074 0.85443 0.77226 0.79749 0.78171 1.17233 1.20757 1.16996 1.24999 0.93583 0.73600 0.79129 1.90669 1.66429 1.42930 1.42268 1.86476 1.25368 1.72132 1.43267 1.23543 0.75186 1.02455 1.05355 0.93254 0.91825 0.93124 0.90984 0.90924 0.91995 0.92306 0.87321 0.89101 0.74838 0.84141 0.83471 0.84312 0.87874 0.89751 0.91409 0.84150 0.93775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 9.91 71.98 0.71 -1.46 16 2 C -0.12 -1.55 5.93 30.59 0.18 -1.36 16 3 C -0.12 -2.11 5.10 30.59 0.16 -1.95 16 4 C -0.10 -1.91 4.72 30.59 0.14 -1.76 16 5 C 0.16 4.78 2.48 44.24 0.11 4.89 16 6 H 0.11 3.64 7.58 -2.39 -0.02 3.62 16 7 N -0.70 -24.18 4.01 -449.35 -1.80 -25.99 16 8 C 0.56 26.75 7.55 86.66 0.65 27.40 16 9 O -0.57 -33.25 13.33 -4.06 -0.05 -33.30 16 10 C -0.26 -12.50 5.92 -19.70 -0.12 -12.61 16 11 C -0.04 -1.44 9.52 22.50 0.21 -1.23 16 12 C -0.22 -7.49 10.03 22.41 0.22 -7.26 16 13 C -0.06 -2.26 10.01 22.26 0.22 -2.04 16 14 C -0.25 -11.43 6.93 22.72 0.16 -11.27 16 15 C 0.10 5.43 5.04 -21.11 -0.11 5.32 16 16 C -0.44 -27.56 8.08 23.41 0.19 -27.38 16 17 H 0.06 3.96 6.37 -2.91 -0.02 3.94 16 18 C 0.03 1.93 5.51 85.37 0.47 2.40 16 19 N -0.86 -51.56 13.92 21.88 0.30 -51.26 16 20 Si 0.97 44.63 24.48 68.60 1.68 46.31 16 21 H -0.25 -10.36 6.70 99.48 0.67 -9.69 16 22 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.25 -11.25 6.67 99.48 0.66 -10.58 16 24 C 0.44 15.11 7.29 71.23 0.52 15.63 16 25 O -0.53 -22.51 16.07 21.96 0.35 -22.16 16 26 O -0.36 -9.89 10.36 -51.37 -0.53 -10.42 16 27 C 0.03 0.61 10.56 113.37 1.20 1.81 16 28 H 0.05 0.73 8.14 -2.39 -0.02 0.72 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.06 1.21 7.75 -2.39 -0.02 1.19 16 34 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.11 1.63 7.99 -2.39 -0.02 1.61 16 36 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 37 H 0.41 11.19 6.66 -92.71 -0.62 10.57 16 38 H 0.14 3.75 6.42 -2.91 -0.02 3.73 16 39 H 0.15 3.61 8.06 -2.91 -0.02 3.58 16 40 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 41 H 0.10 4.77 4.88 -2.91 -0.01 4.76 16 42 H 0.29 15.69 8.29 -92.71 -0.77 14.92 16 43 H 0.07 1.39 8.13 -2.39 -0.02 1.37 16 44 H 0.14 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.04 1.13 8.13 -2.39 -0.02 1.12 16 Total: -1.00 -82.12 370.71 5.18 -76.94 By element: Atomic # 1 Polarization: 30.45 SS G_CDS: 0.30 Total: 30.75 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: 4.93 Total: -10.88 kcal Atomic # 7 Polarization: -75.74 SS G_CDS: -1.50 Total: -77.24 kcal Atomic # 8 Polarization: -65.65 SS G_CDS: -0.23 Total: -65.88 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.68 Total: 46.31 kcal Total: -82.12 5.18 -76.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601443517.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.287 kcal (2) G-P(sol) polarization free energy of solvation -82.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds