Wall clock time and date at job start Tue Mar 31 2020 12:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34227 * 116.99933 * 2 1 4 4 O 1.20822 * 120.00137 * 0.02562 * 3 2 1 5 5 C 1.50708 * 120.00254 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.46804 * 60.00370 * 5 3 2 7 7 C 1.53003 * 109.46814 * 300.00587 * 5 3 2 8 8 C 1.52999 * 109.47275 * 180.02562 * 5 3 2 9 9 C 1.52995 * 109.47191 * 180.02562 * 8 5 3 10 10 N 1.46494 * 109.47394 * 179.97438 * 9 8 5 11 11 C 1.34776 * 120.00009 * 179.97438 * 10 9 8 12 12 O 1.21609 * 120.00181 * 0.02562 * 11 10 9 13 13 C 1.47435 * 119.99851 * 180.02562 * 11 10 9 14 14 C 1.39235 * 120.28378 * 356.68142 * 13 11 10 15 15 C 1.38223 * 120.09183 * 180.28231 * 14 13 11 16 16 C 1.38824 * 120.67578 * 359.69536 * 15 14 13 17 17 C 1.37601 * 120.57302 * 0.02562 * 16 15 14 18 18 C 1.40712 * 119.87956 * 0.02562 * 17 16 15 19 19 C 1.40891 * 120.32906 * 179.97438 * 18 17 16 20 20 H 1.07992 * 120.00234 * 145.79747 * 19 18 17 21 21 C 1.40273 * 119.99571 * 325.79352 * 19 18 17 22 22 N 1.30635 * 120.00253 * 340.74281 * 21 19 18 23 23 Si 1.86798 * 119.99912 * 160.74547 * 21 19 18 24 24 H 1.48507 * 109.47415 * 179.97438 * 23 21 19 25 25 H 1.48498 * 109.47275 * 299.99863 * 23 21 19 26 26 H 1.48501 * 109.47305 * 59.99898 * 23 21 19 27 27 H 1.09005 * 109.46689 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46967 * 299.99021 * 1 2 3 29 29 H 1.08998 * 109.47616 * 59.99686 * 1 2 3 30 30 H 1.08997 * 109.46758 * 179.97438 * 6 5 3 31 31 H 1.08999 * 109.46836 * 299.99844 * 6 5 3 32 32 H 1.08992 * 109.47022 * 60.00272 * 6 5 3 33 33 H 1.08996 * 109.46871 * 299.99527 * 7 5 3 34 34 H 1.08998 * 109.47328 * 59.99964 * 7 5 3 35 35 H 1.09009 * 109.46461 * 179.97438 * 7 5 3 36 36 H 1.08999 * 109.46806 * 59.99965 * 8 5 3 37 37 H 1.09005 * 109.47011 * 300.00184 * 8 5 3 38 38 H 1.09004 * 109.47250 * 59.99698 * 9 8 5 39 39 H 1.09005 * 109.47069 * 299.99874 * 9 8 5 40 40 H 0.96994 * 119.99831 * 359.97438 * 10 9 8 41 41 H 1.08001 * 119.94893 * 359.97438 * 14 13 11 42 42 H 1.07988 * 119.65914 * 179.72052 * 15 14 13 43 43 H 1.08002 * 119.71756 * 180.02562 * 16 15 14 44 44 H 1.07997 * 120.06577 * 180.02562 * 17 16 15 45 45 H 0.97003 * 120.00071 * 354.83739 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.1129 0.5817 -1.2503 7 6 4.1139 0.5810 1.2483 8 6 4.0001 2.7422 0.0002 9 6 5.5279 2.8223 -0.0011 10 7 5.9433 4.2271 -0.0009 11 6 7.2537 4.5424 -0.0014 12 8 8.0912 3.6607 -0.0024 13 6 7.6717 5.9562 -0.0007 14 6 6.7196 6.9699 -0.0692 15 6 7.1162 8.2940 -0.0741 16 6 8.4613 8.6307 -0.0050 17 6 9.4250 7.6514 0.0693 18 6 9.0479 6.2958 0.0750 19 6 10.0268 5.2853 0.1502 20 1 9.8178 4.3696 0.6832 21 6 11.2728 5.4686 -0.4673 22 7 11.4109 6.3668 -1.4058 23 14 12.7348 4.4284 0.0522 24 1 13.9256 4.8137 -0.7471 25 1 13.0129 4.6503 1.4939 26 1 12.4281 2.9937 -0.1777 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 5.2013 0.6392 -1.2509 31 1 3.8038 -0.4636 -1.2504 32 1 3.7228 1.0760 -2.1399 33 1 3.7245 1.0749 2.1385 34 1 3.8049 -0.4643 1.2481 35 1 5.2025 0.6377 1.2476 36 1 3.6107 3.2356 0.8907 37 1 3.6099 3.2368 -0.8893 38 1 5.9170 2.3288 -0.8917 39 1 5.9185 2.3275 0.8883 40 1 5.2753 4.9303 -0.0005 41 1 5.6701 6.7211 -0.1235 42 1 6.3722 9.0745 -0.1320 43 1 8.7538 9.6704 -0.0095 44 1 10.4690 7.9226 0.1232 45 1 10.6368 6.8546 -1.7281 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601570308.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:29 Heat of formation + Delta-G solvation = -121.249280 kcal Electronic energy + Delta-G solvation = -26515.322616 eV Core-core repulsion = 22690.000560 eV Total energy + Delta-G solvation = -3825.322056 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.02026 -39.08133 -37.66828 -36.85605 -36.28998 -34.16095 -33.48838 -30.35032 -29.46896 -28.66541 -27.82625 -27.66330 -25.37761 -24.71047 -22.80676 -21.83802 -20.86218 -19.81070 -19.24687 -18.02909 -17.53316 -16.91170 -16.65330 -16.32417 -15.31109 -15.30054 -14.72190 -14.28193 -14.20951 -14.12962 -14.00627 -13.65502 -13.60538 -13.28973 -12.92919 -12.82451 -12.53911 -12.29798 -12.16649 -12.14807 -11.83386 -11.55330 -11.50752 -11.17855 -11.12207 -11.10278 -10.98063 -10.82889 -10.73555 -10.44094 -10.36147 -10.15216 -9.60809 -9.06848 -8.51123 -8.38023 -7.78021 -7.59705 -7.13812 -4.45344 1.95203 2.25040 2.38967 2.74727 3.20825 3.31567 3.41355 3.85439 4.04631 4.07946 4.29963 4.50187 4.51487 4.65043 4.77523 4.85384 4.89025 5.10236 5.18347 5.20515 5.42601 5.46927 5.47743 5.55566 5.56518 5.75473 5.82770 5.85058 5.88205 6.01207 6.12333 6.14473 6.14958 6.24425 6.52090 6.72674 6.99946 7.10788 7.28922 7.47795 7.50475 7.61532 7.73317 7.89663 8.09897 8.21981 8.37624 8.74141 8.86813 9.36042 10.05008 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017824 B = 0.002873 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.502489 B = 9745.092095 C =11013.596402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.356 6.356 3 C 0.471 3.529 4 O -0.505 6.505 5 C -0.047 4.047 6 C -0.147 4.147 7 C -0.147 4.147 8 C -0.114 4.114 9 C 0.124 3.876 10 N -0.749 5.749 11 C 0.564 3.436 12 O -0.538 6.538 13 C -0.266 4.266 14 C -0.043 4.043 15 C -0.260 4.260 16 C -0.076 4.076 17 C -0.201 4.201 18 C 0.121 3.879 19 C -0.466 4.466 20 H 0.105 0.895 21 C 0.031 3.969 22 N -0.794 5.794 23 Si 1.070 2.930 24 H -0.275 1.275 25 H -0.274 1.274 26 H -0.273 1.273 27 H 0.101 0.899 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.392 0.608 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.107 0.893 45 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.506 -10.984 2.035 19.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.272 6.272 3 C 0.313 3.687 4 O -0.392 6.392 5 C -0.048 4.048 6 C -0.205 4.205 7 C -0.204 4.204 8 C -0.151 4.151 9 C 0.000 4.000 10 N -0.404 5.404 11 C 0.358 3.642 12 O -0.416 6.416 13 C -0.271 4.271 14 C -0.062 4.062 15 C -0.279 4.279 16 C -0.095 4.095 17 C -0.220 4.220 18 C 0.116 3.884 19 C -0.493 4.493 20 H 0.123 0.877 21 C -0.191 4.191 22 N -0.417 5.417 23 Si 0.894 3.106 24 H -0.200 1.200 25 H -0.200 1.200 26 H -0.198 1.198 27 H 0.119 0.881 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.226 0.774 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.111 0.889 44 H 0.125 0.875 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.487 -11.549 1.723 17.840 hybrid contribution -2.557 0.890 0.163 2.713 sum -16.044 -10.658 1.886 19.354 Atomic orbital electron populations 1.23272 0.76526 1.03651 1.02553 1.86508 1.23210 1.33483 1.84020 1.23812 0.91855 0.81237 0.71764 1.90669 1.67119 1.36394 1.44993 1.20453 0.86477 0.98253 0.99642 1.21982 1.02864 1.00675 0.94938 1.21982 1.02840 1.00672 0.94943 1.21720 0.95952 0.93223 1.04247 1.21240 0.92153 0.84362 1.02238 1.45990 1.08121 1.06834 1.79498 1.18360 0.80689 0.89698 0.75458 1.90672 1.50553 1.50239 1.50144 1.19396 0.94596 0.90307 1.22764 1.20732 0.96267 0.93162 0.96061 1.20246 0.95160 0.94940 1.17565 1.20746 0.93376 0.97385 0.97952 1.21252 0.98177 0.92800 1.09796 1.17509 0.90902 0.92286 0.87705 1.21166 0.97016 1.03907 1.27190 0.87695 1.27272 1.01870 0.96630 0.93318 1.70390 1.36925 1.15840 1.18546 0.83558 0.74058 0.75995 0.77022 1.19967 1.19967 1.19784 0.88090 0.91927 0.91930 0.89924 0.91123 0.91935 0.91936 0.91133 0.89934 0.90384 0.90397 0.91658 0.91654 0.77386 0.89082 0.88902 0.88888 0.87538 0.88808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.46 10.37 -39.25 -0.41 -3.87 16 3 C 0.47 5.34 6.55 36.01 0.24 5.58 16 4 O -0.50 -7.06 15.73 -18.75 -0.29 -7.35 16 5 C -0.05 -0.47 0.74 -155.65 -0.11 -0.59 16 6 C -0.15 -1.34 8.05 37.16 0.30 -1.04 16 7 C -0.15 -1.32 8.05 37.16 0.30 -1.02 16 8 C -0.11 -1.33 3.67 -26.73 -0.10 -1.43 16 9 C 0.12 1.79 4.97 -4.05 -0.02 1.77 16 10 N -0.75 -13.18 5.51 -61.38 -0.34 -13.52 16 11 C 0.56 12.99 7.73 -12.52 -0.10 12.90 16 12 O -0.54 -14.03 13.56 5.27 0.07 -13.96 16 13 C -0.27 -6.47 5.92 -104.36 -0.62 -7.09 16 14 C -0.04 -0.92 9.53 -39.22 -0.37 -1.29 16 15 C -0.26 -5.49 10.03 -39.37 -0.39 -5.88 16 16 C -0.08 -1.68 10.01 -39.60 -0.40 -2.08 16 17 C -0.20 -5.03 7.87 -38.88 -0.31 -5.33 16 18 C 0.12 3.21 5.17 -106.54 -0.55 2.66 16 19 C -0.47 -12.78 7.65 -37.81 -0.29 -13.07 16 20 H 0.11 3.00 5.92 -52.49 -0.31 2.68 16 21 C 0.03 0.80 5.04 -17.30 -0.09 0.71 16 22 N -0.79 -21.29 12.57 55.56 0.70 -20.59 16 23 Si 1.07 22.46 29.98 -169.99 -5.10 17.37 16 24 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 25 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 26 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 27 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 29 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 30 H 0.08 0.77 6.43 -51.93 -0.33 0.44 16 31 H 0.07 0.56 8.11 -51.93 -0.42 0.14 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.55 8.11 -51.93 -0.42 0.13 16 35 H 0.08 0.75 6.43 -51.92 -0.33 0.42 16 36 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 37 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 38 H 0.07 0.97 6.43 -51.93 -0.33 0.64 16 39 H 0.07 0.96 6.43 -51.93 -0.33 0.62 16 40 H 0.39 6.08 6.51 -40.82 -0.27 5.81 16 41 H 0.09 1.61 6.41 -52.49 -0.34 1.27 16 42 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 43 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 44 H 0.11 2.71 6.94 -52.49 -0.36 2.35 16 45 H 0.30 8.19 6.55 -40.82 -0.27 7.92 16 LS Contribution 367.88 15.07 5.54 5.54 Total: -1.00 -31.80 367.88 -7.59 -39.38 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -6.32 Total: 10.91 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -1.45 Total: -13.92 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: 0.36 Total: -34.10 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -0.63 Total: -25.18 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.10 Total: 17.37 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.80 -7.59 -39.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601570308.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.867 kcal (2) G-P(sol) polarization free energy of solvation -31.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds