Wall clock time and date at job start Tue Mar 31 2020 12:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34227 * 116.99933 * 2 1 4 4 O 1.20822 * 120.00137 * 0.02562 * 3 2 1 5 5 C 1.50708 * 120.00254 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.46804 * 60.00370 * 5 3 2 7 7 C 1.53003 * 109.46814 * 300.00587 * 5 3 2 8 8 C 1.52999 * 109.47275 * 180.02562 * 5 3 2 9 9 C 1.52995 * 109.47191 * 180.02562 * 8 5 3 10 10 N 1.46494 * 109.47394 * 179.97438 * 9 8 5 11 11 C 1.34776 * 120.00009 * 179.97438 * 10 9 8 12 12 O 1.21609 * 120.00181 * 0.02562 * 11 10 9 13 13 C 1.47435 * 119.99851 * 180.02562 * 11 10 9 14 14 C 1.39235 * 120.28378 * 356.68142 * 13 11 10 15 15 C 1.38223 * 120.09183 * 180.28231 * 14 13 11 16 16 C 1.38824 * 120.67578 * 359.69536 * 15 14 13 17 17 C 1.37601 * 120.57302 * 0.02562 * 16 15 14 18 18 C 1.40712 * 119.87956 * 0.02562 * 17 16 15 19 19 C 1.40891 * 120.32906 * 179.97438 * 18 17 16 20 20 H 1.07992 * 120.00234 * 145.79747 * 19 18 17 21 21 C 1.40273 * 119.99571 * 325.79352 * 19 18 17 22 22 N 1.30635 * 120.00253 * 340.74281 * 21 19 18 23 23 Si 1.86798 * 119.99912 * 160.74547 * 21 19 18 24 24 H 1.48507 * 109.47415 * 179.97438 * 23 21 19 25 25 H 1.48498 * 109.47275 * 299.99863 * 23 21 19 26 26 H 1.48501 * 109.47305 * 59.99898 * 23 21 19 27 27 H 1.09005 * 109.46689 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46967 * 299.99021 * 1 2 3 29 29 H 1.08998 * 109.47616 * 59.99686 * 1 2 3 30 30 H 1.08997 * 109.46758 * 179.97438 * 6 5 3 31 31 H 1.08999 * 109.46836 * 299.99844 * 6 5 3 32 32 H 1.08992 * 109.47022 * 60.00272 * 6 5 3 33 33 H 1.08996 * 109.46871 * 299.99527 * 7 5 3 34 34 H 1.08998 * 109.47328 * 59.99964 * 7 5 3 35 35 H 1.09009 * 109.46461 * 179.97438 * 7 5 3 36 36 H 1.08999 * 109.46806 * 59.99965 * 8 5 3 37 37 H 1.09005 * 109.47011 * 300.00184 * 8 5 3 38 38 H 1.09004 * 109.47250 * 59.99698 * 9 8 5 39 39 H 1.09005 * 109.47069 * 299.99874 * 9 8 5 40 40 H 0.96994 * 119.99831 * 359.97438 * 10 9 8 41 41 H 1.08001 * 119.94893 * 359.97438 * 14 13 11 42 42 H 1.07988 * 119.65914 * 179.72052 * 15 14 13 43 43 H 1.08002 * 119.71756 * 180.02562 * 16 15 14 44 44 H 1.07997 * 120.06577 * 180.02562 * 17 16 15 45 45 H 0.97003 * 120.00071 * 354.83739 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.1129 0.5817 -1.2503 7 6 4.1139 0.5810 1.2483 8 6 4.0001 2.7422 0.0002 9 6 5.5279 2.8223 -0.0011 10 7 5.9433 4.2271 -0.0009 11 6 7.2537 4.5424 -0.0014 12 8 8.0912 3.6607 -0.0024 13 6 7.6717 5.9562 -0.0007 14 6 6.7196 6.9699 -0.0692 15 6 7.1162 8.2940 -0.0741 16 6 8.4613 8.6307 -0.0050 17 6 9.4250 7.6514 0.0693 18 6 9.0479 6.2958 0.0750 19 6 10.0268 5.2853 0.1502 20 1 9.8178 4.3696 0.6832 21 6 11.2728 5.4686 -0.4673 22 7 11.4109 6.3668 -1.4058 23 14 12.7348 4.4284 0.0522 24 1 13.9256 4.8137 -0.7471 25 1 13.0129 4.6503 1.4939 26 1 12.4281 2.9937 -0.1777 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 5.2013 0.6392 -1.2509 31 1 3.8038 -0.4636 -1.2504 32 1 3.7228 1.0760 -2.1399 33 1 3.7245 1.0749 2.1385 34 1 3.8049 -0.4643 1.2481 35 1 5.2025 0.6377 1.2476 36 1 3.6107 3.2356 0.8907 37 1 3.6099 3.2368 -0.8893 38 1 5.9170 2.3288 -0.8917 39 1 5.9185 2.3275 0.8883 40 1 5.2753 4.9303 -0.0005 41 1 5.6701 6.7211 -0.1235 42 1 6.3722 9.0745 -0.1320 43 1 8.7538 9.6704 -0.0095 44 1 10.4690 7.9226 0.1232 45 1 10.6368 6.8546 -1.7281 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601570308.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:28 Heat of formation + Delta-G solvation = -139.914827 kcal Electronic energy + Delta-G solvation = -26516.132015 eV Core-core repulsion = 22690.000560 eV Total energy + Delta-G solvation = -3826.131455 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.88445 -40.79568 -39.00439 -38.19170 -37.29422 -35.94410 -35.06095 -32.05185 -31.28253 -29.89283 -28.54959 -28.39040 -27.13168 -25.83866 -24.24253 -23.20510 -22.61325 -21.30917 -20.42667 -19.82833 -18.38703 -18.01189 -17.84713 -17.44530 -16.71551 -16.52136 -16.48231 -15.87630 -15.71224 -15.43738 -15.20542 -14.88582 -14.79374 -14.55027 -14.30531 -13.90699 -13.80331 -13.68599 -13.61169 -12.96681 -12.93377 -12.87228 -12.70307 -12.59165 -12.48770 -12.39758 -12.04881 -11.97847 -11.94649 -11.92365 -11.80152 -11.45219 -11.31348 -10.94819 -10.35437 -9.96708 -9.59693 -9.48806 -9.09029 -6.44864 0.40897 0.91284 1.08450 1.48271 1.62036 1.63680 1.78400 2.26395 2.32714 2.44868 2.75845 3.44688 3.57020 3.66252 3.68239 4.02591 4.08149 4.20846 4.24362 4.28610 4.29890 4.31251 4.44601 4.55333 4.66661 4.72064 4.72779 4.81384 4.81946 4.88319 4.90728 4.94112 5.02937 5.15024 5.24572 5.27535 5.33516 5.43688 5.59698 5.66725 5.72156 5.90403 5.97655 6.21090 6.34085 6.63969 6.69370 6.86457 6.93311 7.61314 8.05603 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017824 B = 0.002873 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.502489 B = 9745.092095 C =11013.596402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.356 6.356 3 C 0.475 3.525 4 O -0.536 6.536 5 C -0.045 4.045 6 C -0.146 4.146 7 C -0.145 4.145 8 C -0.102 4.102 9 C 0.125 3.875 10 N -0.730 5.730 11 C 0.559 3.441 12 O -0.576 6.576 13 C -0.284 4.284 14 C -0.043 4.043 15 C -0.246 4.246 16 C -0.073 4.073 17 C -0.226 4.226 18 C 0.095 3.905 19 C -0.508 4.508 20 H 0.083 0.917 21 C -0.004 4.004 22 N -0.818 5.818 23 Si 1.116 2.884 24 H -0.266 1.266 25 H -0.259 1.259 26 H -0.269 1.269 27 H 0.133 0.867 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.405 0.595 41 H 0.133 0.867 42 H 0.135 0.865 43 H 0.124 0.876 44 H 0.089 0.911 45 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.908 -11.173 2.330 21.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.272 6.272 3 C 0.319 3.681 4 O -0.425 6.425 5 C -0.047 4.047 6 C -0.203 4.203 7 C -0.202 4.202 8 C -0.140 4.140 9 C 0.002 3.998 10 N -0.384 5.384 11 C 0.352 3.648 12 O -0.457 6.457 13 C -0.289 4.289 14 C -0.061 4.061 15 C -0.265 4.265 16 C -0.091 4.091 17 C -0.245 4.245 18 C 0.091 3.909 19 C -0.536 4.536 20 H 0.101 0.899 21 C -0.219 4.219 22 N -0.442 5.442 23 Si 0.933 3.067 24 H -0.190 1.190 25 H -0.184 1.184 26 H -0.194 1.194 27 H 0.151 0.849 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.241 0.759 41 H 0.151 0.849 42 H 0.153 0.847 43 H 0.142 0.858 44 H 0.108 0.892 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.955 -11.737 2.024 19.910 hybrid contribution -2.151 1.008 0.088 2.377 sum -18.106 -10.729 2.112 21.152 Atomic orbital electron populations 1.23567 0.74905 1.05769 1.02445 1.86495 1.24786 1.32432 1.83443 1.23902 0.92058 0.81258 0.70898 1.90657 1.67810 1.37403 1.46634 1.20425 0.86209 0.97273 1.00764 1.21981 1.02505 1.01496 0.94297 1.21982 1.02519 1.01475 0.94268 1.21579 0.93483 0.94671 1.04228 1.21383 0.94073 0.82252 1.02117 1.45778 1.06478 1.08781 1.77410 1.18368 0.82077 0.89044 0.75349 1.90652 1.52133 1.51014 1.51936 1.19819 0.94626 0.92135 1.22290 1.21158 0.97814 0.92641 0.94511 1.20800 0.95423 0.95947 1.14332 1.21154 0.93582 0.98355 0.96026 1.21212 0.98235 0.93078 1.11979 1.17915 0.92186 0.93015 0.87816 1.21098 0.98810 1.03842 1.29843 0.89923 1.28495 1.04023 0.96965 0.92403 1.70502 1.35918 1.17725 1.20019 0.83021 0.71470 0.74611 0.77580 1.18996 1.18394 1.19423 0.84915 0.92046 0.92091 0.90317 0.89621 0.92034 0.91921 0.89650 0.90267 0.90322 0.90462 0.91951 0.91706 0.75894 0.84904 0.84732 0.85815 0.89234 0.90545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 113.37 1.20 1.51 16 2 O -0.36 -6.15 10.37 -51.38 -0.53 -6.68 16 3 C 0.47 9.96 6.55 71.24 0.47 10.43 16 4 O -0.54 -14.25 15.73 21.98 0.35 -13.90 16 5 C -0.05 -0.84 0.74 -52.92 -0.04 -0.88 16 6 C -0.15 -2.41 8.05 71.98 0.58 -1.83 16 7 C -0.15 -2.36 8.05 71.98 0.58 -1.78 16 8 C -0.10 -2.23 3.67 30.59 0.11 -2.11 16 9 C 0.12 3.48 4.97 86.38 0.43 3.91 16 10 N -0.73 -24.84 5.51 -466.37 -2.57 -27.41 16 11 C 0.56 25.93 7.73 86.67 0.67 26.60 16 12 O -0.58 -31.11 13.56 -4.06 -0.06 -31.16 16 13 C -0.28 -13.82 5.92 -19.70 -0.12 -13.94 16 14 C -0.04 -1.70 9.53 22.51 0.21 -1.48 16 15 C -0.25 -9.49 10.03 22.41 0.22 -9.26 16 16 C -0.07 -3.10 10.01 22.26 0.22 -2.87 16 17 C -0.23 -11.51 7.87 22.72 0.18 -11.33 16 18 C 0.09 5.21 5.17 -21.11 -0.11 5.10 16 19 C -0.51 -29.36 7.65 23.41 0.18 -29.18 16 20 H 0.08 5.02 5.92 -2.91 -0.02 5.01 16 21 C 0.00 -0.20 5.04 85.37 0.43 0.23 16 22 N -0.82 -45.90 12.57 21.88 0.28 -45.62 16 23 Si 1.12 46.96 29.98 68.60 2.06 49.01 16 24 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 25 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 26 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 27 H 0.13 0.70 8.14 -2.38 -0.02 0.68 16 28 H 0.06 0.76 8.13 -2.39 -0.02 0.74 16 29 H 0.06 0.76 8.13 -2.39 -0.02 0.74 16 30 H 0.08 1.38 6.43 -2.39 -0.02 1.36 16 31 H 0.08 1.16 8.11 -2.39 -0.02 1.14 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.08 1.14 8.11 -2.39 -0.02 1.12 16 35 H 0.08 1.35 6.43 -2.38 -0.02 1.34 16 36 H 0.08 1.74 8.10 -2.39 -0.02 1.72 16 37 H 0.08 1.72 8.10 -2.38 -0.02 1.71 16 38 H 0.06 1.82 6.43 -2.38 -0.02 1.81 16 39 H 0.06 1.86 6.43 -2.38 -0.02 1.84 16 40 H 0.40 11.55 6.51 -92.71 -0.60 10.94 16 41 H 0.13 4.10 6.41 -2.91 -0.02 4.08 16 42 H 0.13 4.14 8.06 -2.92 -0.02 4.12 16 43 H 0.12 4.45 8.06 -2.91 -0.02 4.43 16 44 H 0.09 4.78 6.94 -2.91 -0.02 4.76 16 45 H 0.28 16.35 6.55 -92.71 -0.61 15.74 16 Total: -1.00 -72.40 367.88 5.31 -67.08 By element: Atomic # 1 Polarization: 35.01 SS G_CDS: 0.57 Total: 35.58 kcal Atomic # 6 Polarization: -32.12 SS G_CDS: 5.22 Total: -26.90 kcal Atomic # 7 Polarization: -70.74 SS G_CDS: -2.29 Total: -73.03 kcal Atomic # 8 Polarization: -51.51 SS G_CDS: -0.24 Total: -51.75 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.06 Total: 49.01 kcal Total: -72.40 5.31 -67.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601570308.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.832 kcal (2) G-P(sol) polarization free energy of solvation -72.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds