Wall clock time and date at job start Tue Mar 31 2020 13:16:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.52999 * 109.47363 * 2 1
4 4 C 1.52999 * 109.47075 * 120.00272 * 2 1 3
5 5 N 1.46497 * 109.47152 * 174.10308 * 4 2 1
6 6 C 1.46501 * 119.99741 * 276.68545 * 5 4 2
7 7 C 1.50702 * 109.47140 * 269.99459 * 6 5 4
8 8 H 1.08006 * 119.99659 * 0.02562 * 7 6 5
9 9 C 1.37873 * 120.00254 * 179.97438 * 7 6 5
10 10 N 1.31510 * 120.00348 * 180.02562 * 9 7 6
11 11 Si 1.86802 * 119.99891 * 0.02562 * 9 7 6
12 12 H 1.48509 * 109.47036 * 89.99823 * 11 9 7
13 13 H 1.48500 * 109.47474 * 209.99849 * 11 9 7
14 14 H 1.48497 * 109.47395 * 330.00040 * 11 9 7
15 15 C 1.34775 * 120.00158 * 96.68278 * 5 4 2
16 16 O 1.21278 * 120.00117 * 185.40778 * 15 5 4
17 17 C 1.50699 * 120.00048 * 5.41050 * 15 5 4
18 18 O 1.42895 * 109.47438 * 174.71913 * 17 15 5
19 19 C 1.35663 * 117.00183 * 180.02562 * 18 17 15
20 20 C 1.39078 * 119.88593 * 0.24604 * 19 18 17
21 21 C 1.37117 * 120.11322 * 180.26382 * 20 19 18
22 22 C 1.40036 * 119.88407 * 359.46574 * 21 20 19
23 23 C 1.46867 * 120.11201 * 180.30149 * 22 21 20
24 24 O 1.21291 * 119.99785 * 0.02562 * 23 22 21
25 25 C 1.40036 * 119.77415 * 0.28268 * 22 21 20
26 26 C 1.37123 * 119.88253 * 359.97438 * 25 22 21
27 27 H 1.08998 * 109.46924 * 300.00249 * 1 2 3
28 28 H 1.09002 * 109.47316 * 59.99249 * 1 2 3
29 29 H 1.08999 * 109.47766 * 179.97438 * 1 2 3
30 30 H 1.09002 * 109.46867 * 240.00259 * 2 1 3
31 31 H 1.09007 * 109.46803 * 64.70853 * 3 2 1
32 32 H 1.08998 * 109.47068 * 184.70802 * 3 2 1
33 33 H 1.09006 * 109.47112 * 304.71120 * 3 2 1
34 34 H 1.09001 * 109.46962 * 54.09965 * 4 2 1
35 35 H 1.09003 * 109.47309 * 294.10023 * 4 2 1
36 36 H 1.08994 * 109.47207 * 30.00100 * 6 5 4
37 37 H 1.09001 * 109.46865 * 150.00243 * 6 5 4
38 38 H 0.97003 * 120.00016 * 180.02562 * 10 9 7
39 39 H 1.09004 * 109.46841 * 54.71998 * 17 15 5
40 40 H 1.08999 * 109.47408 * 294.72375 * 17 15 5
41 41 H 1.08005 * 119.94254 * 0.02853 * 20 19 18
42 42 H 1.08004 * 120.05474 * 179.74681 * 21 20 19
43 43 H 1.07997 * 119.99339 * 180.02562 * 23 22 21
44 44 H 1.08003 * 120.05820 * 180.02562 * 25 22 21
45 45 H 1.07994 * 119.94207 * 179.97438 * 26 25 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0400 -0.7213 1.2492
5 7 3.4981 -0.8454 1.1804
6 6 4.1048 -1.9451 0.4262
7 6 4.2992 -3.1309 1.3357
8 1 4.0003 -3.0713 2.3719
9 6 4.8577 -4.2920 0.8450
10 7 5.0269 -5.3269 1.6386
11 14 5.3739 -4.3951 -0.9473
12 1 6.7853 -3.9532 -1.0821
13 1 5.2472 -5.7975 -1.4191
14 1 4.4999 -3.5167 -1.7656
15 6 4.2813 0.0521 1.8108
16 8 5.4855 0.0079 1.6740
17 6 3.6608 1.1105 2.6859
18 8 4.6921 1.8567 3.3350
19 6 4.3002 2.8553 4.1655
20 6 2.9456 3.1075 4.3551
21 6 2.5444 4.1191 5.1892
22 6 3.5010 4.8916 5.8595
23 6 3.0767 5.9720 6.7593
24 8 1.8960 6.1962 6.9232
25 6 4.8635 4.6300 5.6693
26 6 5.2543 3.6195 4.8288
27 1 -0.3633 0.5139 0.8900
28 1 -0.3634 0.5140 -0.8899
29 1 -0.3634 -1.0276 -0.0005
30 1 1.8933 -0.5138 -0.8900
31 1 1.7472 1.9314 0.9292
32 1 3.1268 1.4436 -0.0843
33 1 1.6094 1.9801 -0.8448
34 1 1.5929 -1.7139 1.3035
35 1 1.7655 -0.1502 2.1361
36 1 3.4502 -2.2240 -0.3995
37 1 5.0702 -1.6268 0.0329
38 1 5.4202 -6.1437 1.2933
39 1 3.0280 0.6364 3.4362
40 1 3.0578 1.7808 2.0733
41 1 2.2086 2.5080 3.8414
42 1 1.4923 4.3168 5.3325
43 1 3.8160 6.5668 7.2749
44 1 5.6051 5.2227 6.1842
45 1 6.3048 3.4173 4.6810
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000727375560.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:16:44
Heat of formation + Delta-G solvation = -80.766307 kcal
Electronic energy + Delta-G solvation = -26634.264568 eV
Core-core repulsion = 22810.697985 eV
Total energy + Delta-G solvation = -3823.566583 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-40.68699 -39.63898 -38.87821 -37.18145 -36.45859 -33.85633 -32.40056 -31.56803
-30.94467 -29.44410 -27.64449 -27.05873 -25.71101 -24.61743 -23.24546 -22.12589
-21.11791 -20.46600 -18.70984 -18.56138 -17.13483 -17.02303 -16.76917 -16.36598
-16.08023 -15.65947 -15.01731 -14.78304 -14.70672 -14.49740 -14.41104 -14.03964
-13.81839 -13.60955 -13.35056 -13.09537 -12.83536 -12.65668 -12.53123 -12.40211
-12.15526 -11.87509 -11.73532 -11.35818 -11.15462 -11.09544 -10.95932 -10.87862
-10.60084 -10.56526 -10.19552 -10.06242 -9.61333 -9.41596 -9.18566 -8.64945
-8.48324 -7.86649 -6.14774 -4.14622 0.44627 1.08595 2.21133 2.65550
3.07878 3.25076 3.30846 3.33246 3.54386 3.81212 4.01984 4.34043
4.42969 4.49984 4.67723 4.78689 4.87256 4.92229 4.97429 4.99999
5.04077 5.15281 5.18786 5.22326 5.25951 5.43315 5.53237 5.63640
5.70973 5.77426 5.87561 5.89716 5.98250 6.01004 6.07089 6.09051
6.23856 6.32383 6.36320 6.58420 6.84867 7.08431 7.17644 7.21475
7.52745 8.03196 8.38379 8.73618 8.88025 9.44663 10.98399
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.016539 B = 0.003032 C = 0.002731
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1692.603949 B = 9233.087215 C =10248.455493
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.118 4.118
3 C -0.152 4.152
4 C 0.111 3.889
5 N -0.586 5.586
6 C 0.218 3.782
7 C -0.533 4.533
8 H 0.075 0.925
9 C 0.074 3.926
10 N -0.895 5.895
11 Si 0.876 3.124
12 H -0.273 1.273
13 H -0.284 1.284
14 H -0.266 1.266
15 C 0.514 3.486
16 O -0.518 6.518
17 C 0.029 3.971
18 O -0.280 6.280
19 C 0.175 3.825
20 C -0.230 4.230
21 C -0.014 4.014
22 C -0.246 4.246
23 C 0.387 3.613
24 O -0.472 6.472
25 C -0.026 4.026
26 C -0.167 4.167
27 H 0.054 0.946
28 H 0.054 0.946
29 H 0.059 0.941
30 H 0.079 0.921
31 H 0.052 0.948
32 H 0.056 0.944
33 H 0.057 0.943
34 H 0.089 0.911
35 H 0.067 0.933
36 H 0.033 0.967
37 H 0.039 0.961
38 H 0.265 0.735
39 H 0.091 0.909
40 H 0.097 0.903
41 H 0.134 0.866
42 H 0.134 0.866
43 H 0.102 0.898
44 H 0.139 0.861
45 H 0.140 0.860
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.182 19.732 3.499 21.288
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.138 4.138
3 C -0.209 4.209
4 C -0.013 4.013
5 N -0.318 5.318
6 C 0.098 3.902
7 C -0.572 4.572
8 H 0.093 0.907
9 C -0.129 4.129
10 N -0.533 5.533
11 Si 0.702 3.298
12 H -0.198 1.198
13 H -0.210 1.210
14 H -0.190 1.190
15 C 0.299 3.701
16 O -0.393 6.393
17 C -0.049 4.049
18 O -0.190 6.190
19 C 0.127 3.873
20 C -0.249 4.249
21 C -0.032 4.032
22 C -0.247 4.247
23 C 0.247 3.753
24 O -0.346 6.346
25 C -0.044 4.044
26 C -0.186 4.186
27 H 0.073 0.927
28 H 0.074 0.926
29 H 0.078 0.922
30 H 0.098 0.902
31 H 0.071 0.929
32 H 0.075 0.925
33 H 0.076 0.924
34 H 0.107 0.893
35 H 0.085 0.915
36 H 0.051 0.949
37 H 0.057 0.943
38 H 0.075 0.925
39 H 0.109 0.891
40 H 0.115 0.885
41 H 0.152 0.848
42 H 0.152 0.848
43 H 0.118 0.882
44 H 0.157 0.843
45 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges -6.879 19.530 3.448 20.991
hybrid contribution 0.125 -0.453 -0.921 1.034
sum -6.754 19.076 2.528 20.394
Atomic orbital electron populations
1.21766 0.94598 1.02131 1.01613 1.21591 0.95819 0.96372 0.99985
1.22012 1.01518 0.96122 1.01296 1.21671 0.81101 1.01913 0.96651
1.47784 1.05433 1.27299 1.51297 1.19696 0.94249 0.84359 0.91879
1.21303 1.42005 0.95642 0.98215 0.90703 1.24841 0.94865 0.95428
0.97735 1.69889 1.44156 1.03668 1.35616 0.86862 0.79983 0.77509
0.85411 1.19829 1.21005 1.19024 1.19599 0.87402 0.82041 0.81076
1.90719 1.14082 1.72533 1.61947 1.23078 0.90357 0.94503 0.96970
1.86164 1.34534 1.42765 1.55549 1.19565 0.92886 0.86746 0.88072
1.21190 0.94740 1.03179 1.05765 1.21068 0.99933 0.91162 0.91060
1.20788 0.94297 1.03416 1.06182 1.23882 0.90949 0.81909 0.78517
1.90524 1.21916 1.65158 1.57051 1.21054 0.94711 0.94504 0.94118
1.20351 0.99846 0.97817 1.00567 0.92725 0.92642 0.92195 0.90243
0.92926 0.92468 0.92415 0.89286 0.91458 0.94881 0.94312 0.92458
0.89132 0.88522 0.84795 0.84773 0.88196 0.84322 0.84167
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.34 9.19 37.16 0.34 -1.00 16
2 C -0.12 -1.40 3.11 -90.62 -0.28 -1.68 16
3 C -0.15 -1.66 7.59 37.16 0.28 -1.38 16
4 C 0.11 1.58 4.89 -4.04 -0.02 1.56 16
5 N -0.59 -11.28 2.26 -175.06 -0.40 -11.67 16
6 C 0.22 5.11 4.29 -5.19 -0.02 5.09 16
7 C -0.53 -14.87 9.94 -34.44 -0.34 -15.22 16
8 H 0.07 2.29 8.06 -52.48 -0.42 1.86 16
9 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16
10 N -0.90 -27.15 13.96 55.43 0.77 -26.38 16
11 Si 0.88 21.12 27.47 -169.99 -4.67 16.45 16
12 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16
13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16
14 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16
15 C 0.51 10.15 6.53 -10.99 -0.07 10.08 16
16 O -0.52 -12.72 16.06 -14.30 -0.23 -12.95 16
17 C 0.03 0.42 3.56 36.01 0.13 0.55 16
18 O -0.28 -4.40 9.66 -38.54 -0.37 -4.78 16
19 C 0.18 2.20 6.70 -38.96 -0.26 1.94 16
20 C -0.23 -2.46 8.99 -39.68 -0.36 -2.82 16
21 C -0.01 -0.14 9.57 -39.32 -0.38 -0.52 16
22 C -0.25 -2.23 5.87 -105.06 -0.62 -2.85 16
23 C 0.39 3.16 11.44 34.22 0.39 3.55 16
24 O -0.47 -5.68 17.16 5.55 0.10 -5.59 16
25 C -0.03 -0.21 9.77 -39.31 -0.38 -0.59 16
26 C -0.17 -1.78 9.95 -39.67 -0.39 -2.17 16
27 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16
28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16
29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16
30 H 0.08 1.07 8.01 -51.93 -0.42 0.65 16
31 H 0.05 0.48 6.49 -51.93 -0.34 0.14 16
32 H 0.06 0.75 6.87 -51.93 -0.36 0.39 16
33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
34 H 0.09 1.34 8.12 -51.93 -0.42 0.92 16
35 H 0.07 0.77 6.10 -51.93 -0.32 0.46 16
36 H 0.03 0.73 6.99 -51.93 -0.36 0.37 16
37 H 0.04 0.98 6.78 -51.93 -0.35 0.63 16
38 H 0.27 7.52 8.31 -40.82 -0.34 7.19 16
39 H 0.09 1.14 6.86 -51.93 -0.36 0.78 16
40 H 0.10 1.12 4.32 -51.93 -0.22 0.89 16
41 H 0.13 1.21 6.27 -52.48 -0.33 0.88 16
42 H 0.13 1.26 7.64 -52.48 -0.40 0.86 16
43 H 0.10 0.41 8.06 -52.49 -0.42 -0.02 16
44 H 0.14 0.62 8.06 -52.48 -0.42 0.20 16
45 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16
LS Contribution 371.73 15.07 5.60 5.60
Total: -1.00 -35.74 371.73 -7.70 -43.44
By element:
Atomic # 1 Polarization: 5.74 SS G_CDS: -6.42 Total: -0.69 kcal
Atomic # 6 Polarization: -1.36 SS G_CDS: -2.08 Total: -3.44 kcal
Atomic # 7 Polarization: -38.43 SS G_CDS: 0.38 Total: -38.05 kcal
Atomic # 8 Polarization: -22.81 SS G_CDS: -0.51 Total: -23.31 kcal
Atomic # 14 Polarization: 21.12 SS G_CDS: -4.67 Total: 16.45 kcal
Total LS contribution 5.60 Total: 5.60 kcal
Total: -35.74 -7.70 -43.44 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000727375560.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -37.326 kcal
(2) G-P(sol) polarization free energy of solvation -35.740 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.066 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.700 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.441 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.766 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds