Wall clock time and date at job start Tue Mar 31 2020 13:16:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.52999 * 109.47363 * 2 1
4 4 C 1.52999 * 109.47075 * 120.00272 * 2 1 3
5 5 N 1.46497 * 109.47152 * 174.10308 * 4 2 1
6 6 C 1.46501 * 119.99741 * 276.68545 * 5 4 2
7 7 C 1.50702 * 109.47140 * 269.99459 * 6 5 4
8 8 H 1.08006 * 119.99659 * 0.02562 * 7 6 5
9 9 C 1.37873 * 120.00254 * 179.97438 * 7 6 5
10 10 N 1.31510 * 120.00348 * 180.02562 * 9 7 6
11 11 Si 1.86802 * 119.99891 * 0.02562 * 9 7 6
12 12 H 1.48509 * 109.47036 * 89.99823 * 11 9 7
13 13 H 1.48500 * 109.47474 * 209.99849 * 11 9 7
14 14 H 1.48497 * 109.47395 * 330.00040 * 11 9 7
15 15 C 1.34775 * 120.00158 * 96.68278 * 5 4 2
16 16 O 1.21278 * 120.00117 * 185.40778 * 15 5 4
17 17 C 1.50699 * 120.00048 * 5.41050 * 15 5 4
18 18 O 1.42895 * 109.47438 * 174.71913 * 17 15 5
19 19 C 1.35663 * 117.00183 * 180.02562 * 18 17 15
20 20 C 1.39078 * 119.88593 * 0.24604 * 19 18 17
21 21 C 1.37117 * 120.11322 * 180.26382 * 20 19 18
22 22 C 1.40036 * 119.88407 * 359.46574 * 21 20 19
23 23 C 1.46867 * 120.11201 * 180.30149 * 22 21 20
24 24 O 1.21291 * 119.99785 * 0.02562 * 23 22 21
25 25 C 1.40036 * 119.77415 * 0.28268 * 22 21 20
26 26 C 1.37123 * 119.88253 * 359.97438 * 25 22 21
27 27 H 1.08998 * 109.46924 * 300.00249 * 1 2 3
28 28 H 1.09002 * 109.47316 * 59.99249 * 1 2 3
29 29 H 1.08999 * 109.47766 * 179.97438 * 1 2 3
30 30 H 1.09002 * 109.46867 * 240.00259 * 2 1 3
31 31 H 1.09007 * 109.46803 * 64.70853 * 3 2 1
32 32 H 1.08998 * 109.47068 * 184.70802 * 3 2 1
33 33 H 1.09006 * 109.47112 * 304.71120 * 3 2 1
34 34 H 1.09001 * 109.46962 * 54.09965 * 4 2 1
35 35 H 1.09003 * 109.47309 * 294.10023 * 4 2 1
36 36 H 1.08994 * 109.47207 * 30.00100 * 6 5 4
37 37 H 1.09001 * 109.46865 * 150.00243 * 6 5 4
38 38 H 0.97003 * 120.00016 * 180.02562 * 10 9 7
39 39 H 1.09004 * 109.46841 * 54.71998 * 17 15 5
40 40 H 1.08999 * 109.47408 * 294.72375 * 17 15 5
41 41 H 1.08005 * 119.94254 * 0.02853 * 20 19 18
42 42 H 1.08004 * 120.05474 * 179.74681 * 21 20 19
43 43 H 1.07997 * 119.99339 * 180.02562 * 23 22 21
44 44 H 1.08003 * 120.05820 * 180.02562 * 25 22 21
45 45 H 1.07994 * 119.94207 * 179.97438 * 26 25 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0400 -0.7213 1.2492
5 7 3.4981 -0.8454 1.1804
6 6 4.1048 -1.9451 0.4262
7 6 4.2992 -3.1309 1.3357
8 1 4.0003 -3.0713 2.3719
9 6 4.8577 -4.2920 0.8450
10 7 5.0269 -5.3269 1.6386
11 14 5.3739 -4.3951 -0.9473
12 1 6.7853 -3.9532 -1.0821
13 1 5.2472 -5.7975 -1.4191
14 1 4.4999 -3.5167 -1.7656
15 6 4.2813 0.0521 1.8108
16 8 5.4855 0.0079 1.6740
17 6 3.6608 1.1105 2.6859
18 8 4.6921 1.8567 3.3350
19 6 4.3002 2.8553 4.1655
20 6 2.9456 3.1075 4.3551
21 6 2.5444 4.1191 5.1892
22 6 3.5010 4.8916 5.8595
23 6 3.0767 5.9720 6.7593
24 8 1.8960 6.1962 6.9232
25 6 4.8635 4.6300 5.6693
26 6 5.2543 3.6195 4.8288
27 1 -0.3633 0.5139 0.8900
28 1 -0.3634 0.5140 -0.8899
29 1 -0.3634 -1.0276 -0.0005
30 1 1.8933 -0.5138 -0.8900
31 1 1.7472 1.9314 0.9292
32 1 3.1268 1.4436 -0.0843
33 1 1.6094 1.9801 -0.8448
34 1 1.5929 -1.7139 1.3035
35 1 1.7655 -0.1502 2.1361
36 1 3.4502 -2.2240 -0.3995
37 1 5.0702 -1.6268 0.0329
38 1 5.4202 -6.1437 1.2933
39 1 3.0280 0.6364 3.4362
40 1 3.0578 1.7808 2.0733
41 1 2.2086 2.5080 3.8414
42 1 1.4923 4.3168 5.3325
43 1 3.8160 6.5668 7.2749
44 1 5.6051 5.2227 6.1842
45 1 6.3048 3.4173 4.6810
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000727375560.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:16:43
Heat of formation + Delta-G solvation = -103.312559 kcal
Electronic energy + Delta-G solvation = -26635.242247 eV
Core-core repulsion = 22810.697985 eV
Total energy + Delta-G solvation = -3824.544262 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-41.72266 -40.78763 -39.85046 -38.12047 -37.74233 -35.49494 -34.26682 -32.36634
-31.86964 -30.89809 -29.07811 -27.93069 -26.98098 -25.41869 -24.61864 -23.42012
-21.87229 -21.52297 -20.07774 -19.56011 -19.12994 -18.15252 -17.81612 -17.58480
-17.16163 -16.90227 -16.31929 -15.97087 -15.66930 -15.61835 -15.37714 -15.19097
-14.88251 -14.60589 -14.50951 -14.41440 -14.01548 -13.94273 -13.61541 -13.52982
-13.50928 -13.08546 -12.85730 -12.77645 -12.57965 -12.36049 -12.03597 -11.94004
-11.91188 -11.84340 -11.73845 -11.56963 -10.85892 -10.78378 -10.73963 -10.14294
-9.50482 -9.33662 -8.36653 -6.42228 -0.29789 0.34907 1.30366 1.35056
1.41833 1.44779 1.52154 1.63974 2.28460 2.52802 2.81026 2.97722
3.33683 3.45665 3.66026 3.77621 3.85460 3.88600 3.95549 3.98391
4.20797 4.23618 4.32198 4.42471 4.54744 4.58680 4.63867 4.73602
4.78893 4.85391 4.92566 4.98682 5.01661 5.05180 5.15888 5.23988
5.26444 5.33945 5.34884 5.42295 5.46155 5.55401 5.64402 6.16432
6.22866 6.52971 6.56548 6.59425 7.13510 7.26649 8.80087
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.016539 B = 0.003032 C = 0.002731
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1692.603949 B = 9233.087215 C =10248.455493
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.112 4.112
3 C -0.151 4.151
4 C 0.102 3.898
5 N -0.589 5.589
6 C 0.227 3.773
7 C -0.538 4.538
8 H 0.031 0.969
9 C 0.014 3.986
10 N -0.943 5.943
11 Si 0.944 3.056
12 H -0.277 1.277
13 H -0.274 1.274
14 H -0.237 1.237
15 C 0.504 3.496
16 O -0.579 6.579
17 C 0.043 3.957
18 O -0.314 6.314
19 C 0.144 3.856
20 C -0.230 4.230
21 C -0.026 4.026
22 C -0.249 4.249
23 C 0.397 3.603
24 O -0.514 6.514
25 C -0.009 4.009
26 C -0.182 4.182
27 H 0.072 0.928
28 H 0.068 0.932
29 H 0.055 0.945
30 H 0.060 0.940
31 H 0.074 0.926
32 H 0.030 0.970
33 H 0.074 0.926
34 H 0.077 0.923
35 H 0.100 0.900
36 H 0.053 0.947
37 H 0.019 0.981
38 H 0.269 0.731
39 H 0.111 0.889
40 H 0.129 0.871
41 H 0.149 0.851
42 H 0.139 0.861
43 H 0.155 0.845
44 H 0.182 0.818
45 H 0.140 0.860
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.644 22.499 3.290 24.326
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.132 4.132
3 C -0.208 4.208
4 C -0.020 4.020
5 N -0.320 5.320
6 C 0.105 3.895
7 C -0.577 4.577
8 H 0.050 0.950
9 C -0.185 4.185
10 N -0.583 5.583
11 Si 0.767 3.233
12 H -0.203 1.203
13 H -0.199 1.199
14 H -0.160 1.160
15 C 0.292 3.708
16 O -0.459 6.459
17 C -0.034 4.034
18 O -0.226 6.226
19 C 0.098 3.902
20 C -0.249 4.249
21 C -0.045 4.045
22 C -0.250 4.250
23 C 0.260 3.740
24 O -0.390 6.390
25 C -0.027 4.027
26 C -0.201 4.201
27 H 0.091 0.909
28 H 0.087 0.913
29 H 0.075 0.925
30 H 0.079 0.921
31 H 0.093 0.907
32 H 0.049 0.951
33 H 0.093 0.907
34 H 0.096 0.904
35 H 0.118 0.882
36 H 0.071 0.929
37 H 0.037 0.963
38 H 0.078 0.922
39 H 0.129 0.871
40 H 0.146 0.854
41 H 0.166 0.834
42 H 0.156 0.844
43 H 0.171 0.829
44 H 0.199 0.801
45 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges -8.402 22.327 3.248 24.076
hybrid contribution 0.579 -1.244 -0.697 1.538
sum -7.823 21.083 2.551 22.632
Atomic orbital electron populations
1.21730 0.92122 1.02470 1.03199 1.21524 0.97688 0.96419 0.97548
1.22006 0.99818 0.95707 1.03271 1.22038 0.77864 1.02423 0.99650
1.47825 1.07621 1.25993 1.50530 1.19325 0.94192 0.84077 0.91863
1.21539 1.41585 0.97550 0.97025 0.95017 1.25808 0.94792 0.94907
1.02966 1.70038 1.45574 1.04542 1.38150 0.85765 0.79521 0.78425
0.79570 1.20308 1.19908 1.16029 1.20550 0.86822 0.82693 0.80779
1.90672 1.16791 1.74429 1.64007 1.22953 0.89857 0.93671 0.96944
1.86108 1.35481 1.44153 1.56871 1.19876 0.94284 0.87038 0.89001
1.21309 0.94175 1.03477 1.05900 1.21269 1.00609 0.91333 0.91262
1.21167 0.94618 1.03406 1.05813 1.24547 0.91000 0.81131 0.77364
1.90529 1.23974 1.66174 1.58350 1.21435 0.95205 0.93365 0.92651
1.20626 0.99782 0.98515 1.01146 0.90892 0.91314 0.92545 0.92142
0.90743 0.95110 0.90685 0.90438 0.88217 0.92917 0.96330 0.92195
0.87096 0.85353 0.83376 0.84364 0.82946 0.80074 0.84228
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.15 9.19 71.98 0.66 -1.49 16
2 C -0.11 -2.45 3.11 -10.79 -0.03 -2.49 16
3 C -0.15 -2.93 7.59 71.98 0.55 -2.38 16
4 C 0.10 2.82 4.89 86.38 0.42 3.24 16
5 N -0.59 -23.07 2.26 -826.17 -1.87 -24.94 16
6 C 0.23 10.91 4.29 85.63 0.37 11.28 16
7 C -0.54 -31.32 9.94 25.60 0.25 -31.07 16
8 H 0.03 2.05 8.06 -2.91 -0.02 2.03 16
9 C 0.01 0.80 5.47 84.65 0.46 1.26 16
10 N -0.94 -59.31 13.96 21.45 0.30 -59.01 16
11 Si 0.94 44.16 27.47 68.60 1.88 46.04 16
12 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16
13 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16
14 H -0.24 -9.90 6.54 99.48 0.65 -9.25 16
15 C 0.50 20.48 6.53 87.66 0.57 21.05 16
16 O -0.58 -30.01 16.06 15.96 0.26 -29.75 16
17 C 0.04 1.23 3.56 71.24 0.25 1.48 16
18 O -0.31 -10.03 9.66 -70.80 -0.68 -10.71 16
19 C 0.14 3.54 6.70 22.67 0.15 3.69 16
20 C -0.23 -4.55 8.99 22.21 0.20 -4.35 16
21 C -0.03 -0.48 9.57 22.44 0.21 -0.27 16
22 C -0.25 -3.81 5.87 -20.15 -0.12 -3.93 16
23 C 0.40 5.08 11.44 70.08 0.80 5.88 16
24 O -0.51 -11.22 17.16 -3.06 -0.05 -11.27 16
25 C -0.01 -0.12 9.77 22.44 0.22 0.10 16
26 C -0.18 -3.66 9.95 22.21 0.22 -3.44 16
27 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16
28 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16
29 H 0.06 0.93 8.14 -2.39 -0.02 0.92 16
30 H 0.06 1.55 8.01 -2.39 -0.02 1.53 16
31 H 0.07 1.10 6.49 -2.38 -0.02 1.08 16
32 H 0.03 0.76 6.87 -2.39 -0.02 0.75 16
33 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16
34 H 0.08 2.32 8.12 -2.39 -0.02 2.30 16
35 H 0.10 2.07 6.10 -2.39 -0.01 2.05 16
36 H 0.05 2.32 6.99 -2.39 -0.02 2.30 16
37 H 0.02 0.97 6.78 -2.39 -0.02 0.96 16
38 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16
39 H 0.11 2.64 6.86 -2.39 -0.02 2.62 16
40 H 0.13 2.73 4.32 -2.39 -0.01 2.72 16
41 H 0.15 2.32 6.27 -2.91 -0.02 2.30 16
42 H 0.14 2.37 7.64 -2.91 -0.02 2.34 16
43 H 0.15 0.41 8.06 -2.91 -0.02 0.39 16
44 H 0.18 0.74 8.06 -2.91 -0.02 0.72 16
45 H 0.14 2.73 8.06 -2.91 -0.02 2.70 16
Total: -1.00 -84.65 371.73 5.97 -78.67
By element:
Atomic # 1 Polarization: 11.47 SS G_CDS: 0.94 Total: 12.40 kcal
Atomic # 6 Polarization: -6.63 SS G_CDS: 5.20 Total: -1.43 kcal
Atomic # 7 Polarization: -82.38 SS G_CDS: -1.57 Total: -83.95 kcal
Atomic # 8 Polarization: -51.26 SS G_CDS: -0.48 Total: -51.74 kcal
Atomic # 14 Polarization: 44.16 SS G_CDS: 1.88 Total: 46.04 kcal
Total: -84.65 5.97 -78.67 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000727375560.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -24.638 kcal
(2) G-P(sol) polarization free energy of solvation -84.646 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.283 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.971 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.675 kcal
(6) G-S(sol) free energy of system = (1) + (5) -103.313 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds