Wall clock time and date at job start Tue Mar 31 2020 13:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46970 * 2 1 4 4 C 1.52998 * 109.47341 * 120.00185 * 2 1 3 5 5 H 1.08995 * 109.47422 * 183.70423 * 4 2 1 6 6 C 1.52997 * 109.47258 * 63.70386 * 4 2 1 7 7 C 1.50701 * 109.47293 * 66.16277 * 6 4 2 8 8 O 1.20823 * 119.99691 * 6.00217 * 7 6 4 9 9 O 1.34222 * 120.00331 * 185.99154 * 7 6 4 10 10 C 1.45199 * 117.00376 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.47447 * 180.02562 * 10 9 7 12 12 O 1.21289 * 119.99921 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99803 * 180.02562 * 11 10 9 14 14 C 1.37101 * 119.99455 * 180.02562 * 13 11 10 15 15 H 1.08000 * 120.00048 * 359.97438 * 14 13 11 16 16 C 1.38956 * 119.99420 * 179.97438 * 14 13 11 17 17 N 1.31411 * 120.00164 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99678 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.46936 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46906 * 119.99470 * 18 16 14 21 21 H 1.48492 * 109.47233 * 240.00052 * 18 16 14 22 22 C 1.50697 * 109.46955 * 303.70394 * 4 2 1 23 23 C 1.38244 * 120.00145 * 76.86687 * 22 4 2 24 24 C 1.38235 * 120.00020 * 179.81305 * 23 22 4 25 25 C 1.38230 * 120.00031 * 0.38998 * 24 23 22 26 26 C 1.38240 * 120.00119 * 359.86097 * 25 24 23 27 27 C 1.38235 * 120.00146 * 257.13666 * 22 4 2 28 28 H 1.09001 * 109.47210 * 66.45422 * 1 2 3 29 29 H 1.09004 * 109.46918 * 306.45497 * 1 2 3 30 30 H 1.09001 * 109.46748 * 186.45482 * 1 2 3 31 31 H 1.08996 * 109.46722 * 240.00253 * 2 1 3 32 32 H 1.09001 * 109.47552 * 64.39688 * 3 2 1 33 33 H 1.08998 * 109.46977 * 184.39576 * 3 2 1 34 34 H 1.08998 * 109.47367 * 304.39502 * 3 2 1 35 35 H 1.08997 * 109.47067 * 186.16746 * 6 4 2 36 36 H 1.09005 * 109.47218 * 306.16928 * 6 4 2 37 37 H 1.08993 * 109.47440 * 300.00987 * 10 9 7 38 38 H 1.09004 * 109.46322 * 60.00605 * 10 9 7 39 39 H 0.96993 * 120.00154 * 359.97438 * 13 11 10 40 40 H 0.96997 * 119.99453 * 180.02562 * 17 16 14 41 41 H 1.07999 * 119.99946 * 359.97438 * 23 22 4 42 42 H 1.07994 * 119.99925 * 180.23291 * 24 23 22 43 43 H 1.08001 * 120.00424 * 179.83877 * 25 24 23 44 44 H 1.07998 * 120.00061 * 179.97438 * 26 25 24 45 45 H 1.08004 * 120.00216 * 359.97438 * 27 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 3.1280 -0.6641 1.2830 6 6 1.6076 -2.1881 1.2035 7 6 2.3037 -2.8817 0.0609 8 8 3.1474 -2.2973 -0.5766 9 8 1.9866 -4.1487 -0.2485 10 6 2.6969 -4.7532 -1.3613 11 6 2.2112 -6.1660 -1.5593 12 8 1.3514 -6.6191 -0.8337 13 7 2.7331 -6.9264 -2.5422 14 6 2.2909 -8.2115 -2.7226 15 1 1.5247 -8.6146 -2.0770 16 6 2.8286 -8.9953 -3.7363 17 7 3.7605 -8.5046 -4.5221 18 14 2.2266 -10.7466 -3.9818 19 1 1.1805 -11.0562 -2.9741 20 1 1.6563 -10.8873 -5.3457 21 1 3.3636 -11.6880 -3.8210 22 6 1.4642 -0.0659 2.4779 23 6 0.1527 -0.3094 2.8409 24 6 -0.3744 0.2888 3.9702 25 6 0.4076 1.1368 4.7320 26 6 1.7175 1.3844 4.3662 27 6 2.2457 0.7832 3.2390 28 1 -0.3634 0.4105 -0.9421 29 1 -0.3633 0.6107 0.8266 30 1 -0.3633 -1.0212 0.1155 31 1 1.8933 -0.5138 -0.8900 32 1 1.7424 1.9331 0.9267 33 1 3.1271 1.4435 -0.0788 34 1 1.6138 1.9786 -0.8480 35 1 1.8750 -2.6751 2.1412 36 1 0.5286 -2.2445 1.0595 37 1 2.5124 -4.1756 -2.2670 38 1 3.7657 -4.7627 -1.1478 39 1 3.4210 -6.5643 -3.1222 40 1 4.1355 -9.0517 -5.2299 41 1 -0.4593 -0.9690 2.2436 42 1 -1.3978 0.0956 4.2558 43 1 -0.0049 1.6062 5.6129 44 1 2.3282 2.0472 4.9611 45 1 3.2692 0.9766 2.9533 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731243529.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:07 Heat of formation + Delta-G solvation = -113.769922 kcal Electronic energy + Delta-G solvation = -26231.064963 eV Core-core repulsion = 22406.067236 eV Total energy + Delta-G solvation = -3824.997727 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.81184 -39.74544 -38.17480 -36.93261 -35.81684 -33.99917 -31.97101 -31.38133 -31.26874 -30.25543 -28.27564 -27.38620 -25.34803 -24.36963 -22.74695 -22.05407 -20.95879 -19.58546 -19.37298 -18.07273 -17.63435 -16.79533 -16.48712 -16.25219 -15.77889 -15.48450 -15.23602 -14.94223 -14.62061 -14.49066 -13.97783 -13.84273 -13.58072 -13.55976 -13.20201 -12.75602 -12.70729 -12.45995 -12.24310 -12.06750 -12.00596 -11.88892 -11.62881 -11.49806 -11.17676 -11.15409 -10.94695 -10.77220 -10.61126 -10.39147 -10.38244 -10.30915 -10.14607 -9.61677 -9.10484 -8.89707 -8.51706 -8.08301 -6.50117 -3.92031 1.12431 1.17997 2.34237 2.74988 3.11683 3.23760 3.31370 3.55688 3.74040 4.10991 4.35353 4.44325 4.70007 4.74116 4.77001 4.80267 4.87346 4.97152 5.04062 5.14917 5.17329 5.22859 5.26765 5.36793 5.38825 5.53388 5.58407 5.64933 5.69565 5.72815 5.75288 5.76298 5.82959 5.86362 6.04451 6.06332 6.16198 6.22474 6.29617 6.30617 6.43675 6.68791 6.78171 7.47957 7.87005 7.97944 8.48743 9.07273 9.39592 9.89545 10.67220 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.027984 B = 0.002228 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.332355 B =12564.594821 C =12987.526972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.093 4.093 3 C -0.144 4.144 4 C -0.033 4.033 5 H 0.092 0.908 6 C -0.112 4.112 7 C 0.459 3.541 8 O -0.512 6.512 9 O -0.327 6.327 10 C 0.061 3.939 11 C 0.438 3.562 12 O -0.576 6.576 13 N -0.554 5.554 14 C -0.301 4.301 15 H 0.106 0.894 16 C 0.024 3.976 17 N -0.897 5.897 18 Si 0.933 3.067 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.280 1.280 22 C -0.068 4.068 23 C -0.114 4.114 24 C -0.120 4.120 25 C -0.126 4.126 26 C -0.121 4.121 27 C -0.113 4.113 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.395 0.605 40 H 0.273 0.727 41 H 0.126 0.874 42 H 0.121 0.879 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.702 21.314 13.264 25.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.112 4.112 3 C -0.201 4.201 4 C -0.052 4.052 5 H 0.110 0.890 6 C -0.150 4.150 7 C 0.302 3.698 8 O -0.401 6.401 9 O -0.241 6.241 10 C -0.017 4.017 11 C 0.223 3.777 12 O -0.460 6.460 13 N -0.191 5.191 14 C -0.431 4.431 15 H 0.124 0.876 16 C -0.178 4.178 17 N -0.538 5.538 18 Si 0.760 3.240 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.068 4.068 23 C -0.132 4.132 24 C -0.138 4.138 25 C -0.144 4.144 26 C -0.139 4.139 27 C -0.131 4.131 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.228 0.772 40 H 0.083 0.917 41 H 0.144 0.856 42 H 0.139 0.861 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.929 21.053 13.379 25.252 hybrid contribution 0.366 -0.615 -0.679 0.986 sum -3.563 20.438 12.700 24.325 Atomic orbital electron populations 1.22160 0.95503 1.01861 1.02055 1.21199 0.95693 0.96596 0.97670 1.21814 1.00985 0.95681 1.01646 1.20061 1.01254 0.91331 0.92524 0.89003 1.21559 1.02432 0.94703 0.96258 1.23675 0.80973 0.80462 0.84690 1.90632 1.31896 1.65993 1.51620 1.86555 1.61268 1.27220 1.49071 1.22730 0.96542 0.94363 0.88066 1.19347 0.86999 0.86286 0.85059 1.90560 1.34221 1.73652 1.47561 1.41720 1.36246 1.12773 1.28362 1.19777 1.20740 0.87558 1.14977 0.87571 1.25319 0.96187 1.00599 0.95733 1.69622 1.26896 1.38008 1.19257 0.85742 0.78690 0.81240 0.78338 1.19085 1.20626 1.20619 1.19718 0.94097 0.97322 0.95651 1.21197 0.95036 1.00153 0.96848 1.21150 0.99912 0.97467 0.95272 1.21134 0.94444 0.98915 0.99900 1.21119 0.95640 1.00055 0.97071 1.21053 0.99776 0.97211 0.95052 0.92682 0.91895 0.92447 0.89449 0.92578 0.92662 0.92833 0.87279 0.87291 0.89602 0.89598 0.77170 0.91689 0.85625 0.86139 0.86386 0.86265 0.86102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 7.64 37.16 0.28 -1.17 16 2 C -0.09 -0.95 2.50 -90.62 -0.23 -1.18 16 3 C -0.14 -1.31 9.02 37.16 0.34 -0.98 16 4 C -0.03 -0.33 1.55 -91.78 -0.14 -0.47 16 5 H 0.09 0.98 7.65 -51.93 -0.40 0.58 16 6 C -0.11 -1.24 4.60 -27.88 -0.13 -1.37 16 7 C 0.46 6.93 7.53 36.01 0.27 7.21 16 8 O -0.51 -8.42 14.05 -18.75 -0.26 -8.69 16 9 O -0.33 -6.03 9.75 -45.88 -0.45 -6.48 16 10 C 0.06 1.16 5.94 36.01 0.21 1.37 16 11 C 0.44 10.62 7.86 -10.98 -0.09 10.53 16 12 O -0.58 -16.08 16.08 -14.11 -0.23 -16.31 16 13 N -0.55 -14.05 5.29 -10.96 -0.06 -14.11 16 14 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 15 H 0.11 3.07 7.16 -52.49 -0.38 2.70 16 16 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 17 N -0.90 -24.11 13.05 55.50 0.72 -23.39 16 18 Si 0.93 20.73 29.55 -169.99 -5.02 15.70 16 19 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 20 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 22 C -0.07 -0.61 3.70 -104.62 -0.39 -1.00 16 23 C -0.11 -0.98 6.87 -39.58 -0.27 -1.25 16 24 C -0.12 -0.95 10.05 -39.59 -0.40 -1.35 16 25 C -0.13 -0.96 10.05 -39.58 -0.40 -1.36 16 26 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 27 C -0.11 -0.96 8.85 -39.58 -0.35 -1.31 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.54 6.00 -51.93 -0.31 0.23 16 30 H 0.06 0.52 5.71 -51.93 -0.30 0.23 16 31 H 0.09 1.09 6.22 -51.93 -0.32 0.76 16 32 H 0.06 0.49 6.59 -51.93 -0.34 0.15 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.11 1.08 5.02 -51.93 -0.26 0.81 16 37 H 0.09 1.49 8.13 -51.93 -0.42 1.07 16 38 H 0.09 1.50 8.13 -51.93 -0.42 1.08 16 39 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 40 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 41 H 0.13 0.98 5.56 -52.49 -0.29 0.69 16 42 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 43 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 44 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 45 H 0.12 0.90 8.02 -52.48 -0.42 0.48 16 LS Contribution 367.64 15.07 5.54 5.54 Total: -1.00 -32.09 367.64 -7.96 -40.05 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -6.28 Total: 9.28 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -1.92 Total: -1.60 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.67 Total: -37.50 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -0.94 Total: -31.47 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.09 -7.96 -40.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731243529.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.718 kcal (2) G-P(sol) polarization free energy of solvation -32.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds