Wall clock time and date at job start Tue Mar 31 2020 13:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46970 * 2 1 4 4 C 1.52998 * 109.47341 * 120.00185 * 2 1 3 5 5 H 1.08995 * 109.47422 * 183.70423 * 4 2 1 6 6 C 1.52997 * 109.47258 * 63.70386 * 4 2 1 7 7 C 1.50701 * 109.47293 * 66.16277 * 6 4 2 8 8 O 1.20823 * 119.99691 * 6.00217 * 7 6 4 9 9 O 1.34222 * 120.00331 * 185.99154 * 7 6 4 10 10 C 1.45199 * 117.00376 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.47447 * 180.02562 * 10 9 7 12 12 O 1.21289 * 119.99921 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99803 * 180.02562 * 11 10 9 14 14 C 1.37101 * 119.99455 * 180.02562 * 13 11 10 15 15 H 1.08000 * 120.00048 * 359.97438 * 14 13 11 16 16 C 1.38956 * 119.99420 * 179.97438 * 14 13 11 17 17 N 1.31411 * 120.00164 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99678 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.46936 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46906 * 119.99470 * 18 16 14 21 21 H 1.48492 * 109.47233 * 240.00052 * 18 16 14 22 22 C 1.50697 * 109.46955 * 303.70394 * 4 2 1 23 23 C 1.38244 * 120.00145 * 76.86687 * 22 4 2 24 24 C 1.38235 * 120.00020 * 179.81305 * 23 22 4 25 25 C 1.38230 * 120.00031 * 0.38998 * 24 23 22 26 26 C 1.38240 * 120.00119 * 359.86097 * 25 24 23 27 27 C 1.38235 * 120.00146 * 257.13666 * 22 4 2 28 28 H 1.09001 * 109.47210 * 66.45422 * 1 2 3 29 29 H 1.09004 * 109.46918 * 306.45497 * 1 2 3 30 30 H 1.09001 * 109.46748 * 186.45482 * 1 2 3 31 31 H 1.08996 * 109.46722 * 240.00253 * 2 1 3 32 32 H 1.09001 * 109.47552 * 64.39688 * 3 2 1 33 33 H 1.08998 * 109.46977 * 184.39576 * 3 2 1 34 34 H 1.08998 * 109.47367 * 304.39502 * 3 2 1 35 35 H 1.08997 * 109.47067 * 186.16746 * 6 4 2 36 36 H 1.09005 * 109.47218 * 306.16928 * 6 4 2 37 37 H 1.08993 * 109.47440 * 300.00987 * 10 9 7 38 38 H 1.09004 * 109.46322 * 60.00605 * 10 9 7 39 39 H 0.96993 * 120.00154 * 359.97438 * 13 11 10 40 40 H 0.96997 * 119.99453 * 180.02562 * 17 16 14 41 41 H 1.07999 * 119.99946 * 359.97438 * 23 22 4 42 42 H 1.07994 * 119.99925 * 180.23291 * 24 23 22 43 43 H 1.08001 * 120.00424 * 179.83877 * 25 24 23 44 44 H 1.07998 * 120.00061 * 179.97438 * 26 25 24 45 45 H 1.08004 * 120.00216 * 359.97438 * 27 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 3.1280 -0.6641 1.2830 6 6 1.6076 -2.1881 1.2035 7 6 2.3037 -2.8817 0.0609 8 8 3.1474 -2.2973 -0.5766 9 8 1.9866 -4.1487 -0.2485 10 6 2.6969 -4.7532 -1.3613 11 6 2.2112 -6.1660 -1.5593 12 8 1.3514 -6.6191 -0.8337 13 7 2.7331 -6.9264 -2.5422 14 6 2.2909 -8.2115 -2.7226 15 1 1.5247 -8.6146 -2.0770 16 6 2.8286 -8.9953 -3.7363 17 7 3.7605 -8.5046 -4.5221 18 14 2.2266 -10.7466 -3.9818 19 1 1.1805 -11.0562 -2.9741 20 1 1.6563 -10.8873 -5.3457 21 1 3.3636 -11.6880 -3.8210 22 6 1.4642 -0.0659 2.4779 23 6 0.1527 -0.3094 2.8409 24 6 -0.3744 0.2888 3.9702 25 6 0.4076 1.1368 4.7320 26 6 1.7175 1.3844 4.3662 27 6 2.2457 0.7832 3.2390 28 1 -0.3634 0.4105 -0.9421 29 1 -0.3633 0.6107 0.8266 30 1 -0.3633 -1.0212 0.1155 31 1 1.8933 -0.5138 -0.8900 32 1 1.7424 1.9331 0.9267 33 1 3.1271 1.4435 -0.0788 34 1 1.6138 1.9786 -0.8480 35 1 1.8750 -2.6751 2.1412 36 1 0.5286 -2.2445 1.0595 37 1 2.5124 -4.1756 -2.2670 38 1 3.7657 -4.7627 -1.1478 39 1 3.4210 -6.5643 -3.1222 40 1 4.1355 -9.0517 -5.2299 41 1 -0.4593 -0.9690 2.2436 42 1 -1.3978 0.0956 4.2558 43 1 -0.0049 1.6062 5.6129 44 1 2.3282 2.0472 4.9611 45 1 3.2692 0.9766 2.9533 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731243529.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:06 Heat of formation + Delta-G solvation = -130.603568 kcal Electronic energy + Delta-G solvation = -26231.794924 eV Core-core repulsion = 22406.067236 eV Total energy + Delta-G solvation = -3825.727689 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.92284 -40.69750 -39.97283 -37.95470 -36.98856 -36.04155 -33.43460 -32.76737 -31.86778 -31.12322 -29.79858 -28.11185 -26.80424 -25.76347 -23.38324 -22.74730 -22.10624 -21.43396 -20.21932 -20.07837 -18.85104 -17.89177 -17.86359 -17.44331 -17.09146 -16.53323 -16.33780 -16.10154 -15.86278 -15.74819 -15.52775 -15.00223 -14.69199 -14.39028 -14.16226 -13.92842 -13.77177 -13.58772 -13.44948 -13.33346 -13.02221 -12.94968 -12.89436 -12.71671 -12.47758 -12.19755 -12.11324 -11.88767 -11.80294 -11.71858 -11.65777 -11.59197 -11.47816 -11.10882 -10.52242 -10.12971 -9.70179 -9.52306 -8.53536 -6.04175 0.50667 0.58421 1.12974 1.33999 1.38400 1.46616 1.59354 1.85670 2.29384 2.94206 3.03928 3.11940 3.51868 3.65711 3.86455 3.92445 4.07906 4.14676 4.16263 4.21046 4.21853 4.23923 4.26266 4.41333 4.47355 4.53457 4.67660 4.75108 4.82831 4.87620 4.96123 5.04310 5.08627 5.13488 5.24344 5.28898 5.34391 5.36757 5.44561 5.51776 5.67069 5.71773 5.79480 5.88212 6.19350 6.44865 6.67206 7.01923 7.38663 7.92143 8.63739 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.027984 B = 0.002228 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.332355 B =12564.594821 C =12987.526972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.094 4.094 3 C -0.139 4.139 4 C -0.025 4.025 5 H 0.082 0.918 6 C -0.107 4.107 7 C 0.459 3.541 8 O -0.526 6.526 9 O -0.347 6.347 10 C 0.071 3.929 11 C 0.436 3.564 12 O -0.618 6.618 13 N -0.559 5.559 14 C -0.337 4.337 15 H 0.084 0.916 16 C -0.010 4.010 17 N -0.915 5.915 18 Si 0.999 3.001 19 H -0.271 1.271 20 H -0.269 1.269 21 H -0.269 1.269 22 C -0.075 4.075 23 C -0.123 4.123 24 C -0.127 4.127 25 C -0.130 4.130 26 C -0.126 4.126 27 C -0.122 4.122 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.400 0.600 40 H 0.281 0.719 41 H 0.130 0.870 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.137 0.863 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.988 22.097 13.989 26.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.112 4.112 3 C -0.196 4.196 4 C -0.043 4.043 5 H 0.101 0.899 6 C -0.144 4.144 7 C 0.304 3.696 8 O -0.415 6.415 9 O -0.262 6.262 10 C -0.006 4.006 11 C 0.223 3.777 12 O -0.505 6.505 13 N -0.196 5.196 14 C -0.466 4.466 15 H 0.102 0.898 16 C -0.211 4.211 17 N -0.555 5.555 18 Si 0.822 3.178 19 H -0.195 1.195 20 H -0.194 1.194 21 H -0.194 1.194 22 C -0.075 4.075 23 C -0.141 4.141 24 C -0.145 4.145 25 C -0.148 4.148 26 C -0.144 4.144 27 C -0.140 4.140 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.234 0.766 40 H 0.090 0.910 41 H 0.148 0.852 42 H 0.154 0.846 43 H 0.155 0.845 44 H 0.155 0.845 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.188 21.868 14.090 26.349 hybrid contribution 0.470 -0.777 -0.867 1.256 sum -3.718 21.091 13.223 25.169 Atomic orbital electron populations 1.22132 0.94668 1.02012 1.02423 1.21160 0.96405 0.96952 0.96718 1.21766 1.00750 0.95056 1.02066 1.19954 1.00705 0.90554 0.93133 0.89935 1.21723 1.02787 0.94961 0.94911 1.24429 0.80807 0.79217 0.85155 1.90626 1.32680 1.65888 1.52329 1.86564 1.61768 1.28995 1.48884 1.22482 0.97213 0.91329 0.89550 1.20142 0.85894 0.87952 0.83736 1.90523 1.35991 1.75111 1.48837 1.41761 1.36452 1.12528 1.28863 1.19756 1.21700 0.89095 1.16060 0.89786 1.26146 0.95891 1.04253 0.94773 1.69678 1.27069 1.39470 1.19331 0.84790 0.78305 0.76355 0.78390 1.19544 1.19427 1.19426 1.19608 0.94503 0.97992 0.95435 1.21314 0.94924 1.00502 0.97354 1.21406 1.00807 0.97285 0.95008 1.21439 0.94394 0.98569 1.00380 1.21380 0.96065 1.00072 0.96910 1.21204 1.00130 0.97316 0.95396 0.92657 0.91053 0.92501 0.91934 0.92002 0.92988 0.92504 0.85918 0.85918 0.87723 0.87732 0.76583 0.90960 0.85181 0.84596 0.84499 0.84542 0.85595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 7.64 71.98 0.55 -2.14 16 2 C -0.09 -1.86 2.50 -10.79 -0.03 -1.89 16 3 C -0.14 -2.43 9.02 71.98 0.65 -1.78 16 4 C -0.02 -0.48 1.55 -11.54 -0.02 -0.50 16 5 H 0.08 1.73 7.65 -2.39 -0.02 1.71 16 6 C -0.11 -2.26 4.60 29.85 0.14 -2.12 16 7 C 0.46 13.67 7.53 71.24 0.54 14.20 16 8 O -0.53 -17.10 14.05 21.97 0.31 -16.79 16 9 O -0.35 -12.73 9.75 -44.98 -0.44 -13.17 16 10 C 0.07 2.71 5.94 71.24 0.42 3.14 16 11 C 0.44 21.48 7.86 87.66 0.69 22.17 16 12 O -0.62 -35.40 16.08 15.74 0.25 -35.14 16 13 N -0.56 -28.86 5.29 -306.98 -1.62 -30.48 16 14 C -0.34 -19.01 9.68 84.04 0.81 -18.20 16 15 H 0.08 5.03 7.16 -2.91 -0.02 5.01 16 16 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 17 N -0.92 -48.74 13.05 21.66 0.28 -48.46 16 18 Si 1.00 42.12 29.55 68.60 2.03 44.15 16 19 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 20 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 21 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 22 C -0.08 -1.26 3.70 -19.86 -0.07 -1.33 16 23 C -0.12 -1.90 6.87 22.27 0.15 -1.75 16 24 C -0.13 -1.75 10.05 22.27 0.22 -1.52 16 25 C -0.13 -1.67 10.05 22.27 0.22 -1.45 16 26 C -0.13 -1.70 10.05 22.27 0.22 -1.48 16 27 C -0.12 -1.90 8.85 22.27 0.20 -1.70 16 28 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.07 1.12 6.00 -2.39 -0.01 1.10 16 30 H 0.06 0.98 5.71 -2.39 -0.01 0.96 16 31 H 0.06 1.56 6.22 -2.39 -0.01 1.54 16 32 H 0.06 1.01 6.59 -2.39 -0.02 0.99 16 33 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.12 2.28 5.02 -2.38 -0.01 2.27 16 37 H 0.10 3.57 8.13 -2.39 -0.02 3.55 16 38 H 0.10 3.57 8.13 -2.38 -0.02 3.55 16 39 H 0.40 19.46 7.90 -92.71 -0.73 18.73 16 40 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 41 H 0.13 1.81 5.56 -2.91 -0.02 1.80 16 42 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 43 H 0.14 1.19 8.06 -2.91 -0.02 1.16 16 44 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 45 H 0.13 1.74 8.02 -2.91 -0.02 1.71 16 Total: -1.00 -68.78 367.64 6.26 -62.52 By element: Atomic # 1 Polarization: 33.48 SS G_CDS: 0.28 Total: 33.76 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: 5.17 Total: 3.60 kcal Atomic # 7 Polarization: -77.60 SS G_CDS: -1.34 Total: -78.94 kcal Atomic # 8 Polarization: -65.22 SS G_CDS: 0.12 Total: -65.10 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -68.78 6.26 -62.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731243529.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.083 kcal (2) G-P(sol) polarization free energy of solvation -68.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds