Wall clock time and date at job start Tue Mar 31 2020 13:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47462 * 2 1 4 4 C 1.53002 * 109.47327 * 120.00530 * 2 1 3 5 5 N 1.46496 * 109.47453 * 63.00554 * 4 2 1 6 6 C 1.46499 * 119.99714 * 273.10169 * 5 4 2 7 7 C 1.50704 * 109.47372 * 274.36748 * 6 5 4 8 8 H 1.07995 * 119.99779 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99827 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00213 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99679 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.46959 * 60.00058 * 11 9 7 13 13 H 1.48501 * 109.47226 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47088 * 299.99929 * 11 9 7 15 15 S 1.65599 * 119.99918 * 93.10235 * 5 4 2 16 16 O 1.42103 * 104.27627 * 153.92891 * 15 5 4 17 17 O 1.42098 * 104.27679 * 26.07407 * 15 5 4 18 18 C 1.81399 * 104.44826 * 269.99747 * 15 5 4 19 19 C 1.52998 * 109.46726 * 179.97438 * 18 15 5 20 20 H 1.08995 * 109.48433 * 305.02119 * 19 18 15 21 21 C 1.53097 * 109.47782 * 184.99929 * 19 18 15 22 22 C 1.53181 * 109.16444 * 182.40622 * 21 19 18 23 23 C 1.53179 * 109.03127 * 56.98842 * 22 21 19 24 24 C 1.53094 * 109.16355 * 303.01637 * 23 22 21 25 25 O 1.42898 * 109.47921 * 65.06476 * 19 18 15 26 26 H 1.08994 * 109.47298 * 52.74323 * 1 2 3 27 27 H 1.09001 * 109.47140 * 172.74786 * 1 2 3 28 28 H 1.08999 * 109.46768 * 292.74272 * 1 2 3 29 29 H 1.09005 * 109.47022 * 240.00260 * 2 1 3 30 30 H 1.08992 * 109.47596 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.47347 * 300.00699 * 3 2 1 32 32 H 1.09004 * 109.47210 * 59.99784 * 3 2 1 33 33 H 1.09007 * 109.46753 * 303.00434 * 4 2 1 34 34 H 1.08996 * 109.46966 * 183.01309 * 4 2 1 35 35 H 1.09002 * 109.47428 * 34.37540 * 6 5 4 36 36 H 1.08999 * 109.47068 * 154.36955 * 6 5 4 37 37 H 0.97000 * 119.99622 * 179.97438 * 10 9 7 38 38 H 1.08995 * 109.47191 * 300.00176 * 18 15 5 39 39 H 1.09004 * 109.46962 * 60.00663 * 18 15 5 40 40 H 1.08999 * 109.52720 * 302.32347 * 21 19 18 41 41 H 1.09001 * 109.52073 * 62.44738 * 21 19 18 42 42 H 1.08997 * 109.54185 * 176.84885 * 22 21 19 43 43 H 1.09000 * 109.54650 * 297.03213 * 22 21 19 44 44 H 1.08999 * 109.52940 * 62.92156 * 23 22 21 45 45 H 1.08994 * 109.52309 * 183.05020 * 23 22 21 46 46 H 1.09000 * 109.48648 * 177.59234 * 24 23 22 47 47 H 1.09001 * 109.48148 * 297.62070 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7214 1.2492 5 7 1.6118 -2.1219 1.2135 6 6 0.3021 -2.5012 1.7490 7 6 0.4156 -2.7385 3.2330 8 1 1.3680 -2.6183 3.7276 9 6 -0.6965 -3.1089 3.9589 10 7 -1.8562 -3.2558 3.3563 11 14 -0.5558 -3.4023 5.7983 12 1 -0.0909 -2.1588 6.4638 13 1 -1.8832 -3.7881 6.3410 14 1 0.4185 -4.4938 6.0524 15 16 2.6083 -3.2762 0.5677 16 8 2.2205 -4.4781 1.2192 17 8 3.9151 -2.7427 0.7319 18 6 2.1589 -3.3308 -1.1889 19 6 3.0215 -4.3728 -1.9037 20 1 4.0750 -4.1530 -1.7310 21 6 2.7310 -4.3320 -3.4063 22 6 3.5533 -5.4179 -4.1071 23 6 3.2168 -6.7775 -3.4868 24 6 3.4884 -6.7240 -1.9811 25 8 2.7162 -5.6733 -1.3962 26 1 -0.3633 0.6221 -0.8179 27 1 -0.3633 -1.0194 -0.1297 28 1 -0.3633 0.3973 0.9478 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6334 -0.2396 2.1384 34 1 3.1287 -0.6748 1.2765 35 1 -0.4127 -1.6996 1.5628 36 1 -0.0399 -3.4135 1.2604 37 1 -2.6385 -3.5168 3.8671 38 1 1.1073 -3.6001 -1.2867 39 1 2.3265 -2.3515 -1.6374 40 1 1.6696 -4.5114 -3.5772 41 1 3.0038 -3.3542 -3.8035 42 1 3.3093 -5.4314 -5.1693 43 1 4.6157 -5.2103 -3.9795 44 1 2.1652 -7.0065 -3.6593 45 1 3.8370 -7.5493 -3.9425 46 1 3.2103 -7.6753 -1.5275 47 1 4.5481 -6.5353 -1.8094 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731672944.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:25 Heat of formation + Delta-G solvation = -136.170739 kcal Electronic energy + Delta-G solvation = -27058.550477 eV Core-core repulsion = 23368.025329 eV Total energy + Delta-G solvation = -3690.525148 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.52723 -37.19533 -36.34504 -35.12034 -33.79893 -33.60353 -32.99114 -32.01551 -28.17145 -27.61028 -26.74994 -24.90079 -24.44861 -22.74113 -22.03309 -20.48537 -19.96340 -18.05289 -16.85851 -16.70722 -16.46346 -16.02647 -15.80526 -15.55845 -14.74614 -14.61267 -14.45466 -14.39832 -13.94934 -13.53006 -13.38780 -12.91231 -12.68764 -12.67487 -12.42124 -12.26735 -12.11417 -11.73698 -11.53185 -11.44893 -11.29417 -11.27273 -11.17203 -11.11830 -11.05054 -11.02228 -10.78524 -10.61025 -10.55893 -10.27696 -10.23579 -10.08681 -9.84569 -9.63997 -9.46093 -8.34274 -7.91204 -5.97736 -3.99744 0.92274 3.39348 3.42362 3.42921 3.49328 3.57550 4.34629 4.51506 4.56965 4.62887 4.68249 4.73733 4.82285 4.95507 5.02893 5.09317 5.24626 5.25598 5.33319 5.37770 5.41140 5.47421 5.55678 5.61417 5.69956 5.72643 5.79323 5.83241 5.89234 5.91346 5.99036 6.09770 6.12205 6.18093 6.33738 6.36866 6.58232 6.64202 6.80626 7.09596 7.31065 7.48494 7.70034 8.00315 8.31555 9.01756 9.64143 11.10896 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.012460 B = 0.004931 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.629989 B = 5676.499485 C = 7028.900198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.119 4.119 3 C -0.144 4.144 4 C 0.123 3.877 5 N -0.983 5.983 6 C 0.249 3.751 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.062 3.938 10 N -0.898 5.898 11 Si 0.894 3.106 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.275 1.275 15 S 2.607 3.393 16 O -0.920 6.920 17 O -0.978 6.978 18 C -0.642 4.642 19 C 0.102 3.898 20 H 0.068 0.932 21 C -0.142 4.142 22 C -0.125 4.125 23 C -0.158 4.158 24 C 0.057 3.943 25 O -0.369 6.369 26 H 0.042 0.958 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.047 0.953 36 H 0.036 0.964 37 H 0.262 0.738 38 H 0.140 0.860 39 H 0.136 0.864 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.100 0.900 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.632 1.562 -15.910 18.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.139 4.139 3 C -0.202 4.202 4 C -0.003 4.003 5 N -0.820 5.820 6 C 0.128 3.872 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.140 4.140 10 N -0.538 5.538 11 Si 0.722 3.278 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.201 1.201 15 S 2.697 3.303 16 O -0.910 6.910 17 O -0.969 6.969 18 C -0.767 4.767 19 C 0.043 3.957 20 H 0.086 0.914 21 C -0.180 4.180 22 C -0.162 4.162 23 C -0.196 4.196 24 C -0.019 4.019 25 O -0.288 6.288 26 H 0.061 0.939 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.158 0.842 39 H 0.154 0.846 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.118 0.882 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.911 0.975 -15.266 17.703 hybrid contribution -0.360 0.088 0.131 0.393 sum 8.550 1.063 -15.136 17.416 Atomic orbital electron populations 1.21935 0.94468 1.02434 1.01463 1.21686 0.97225 0.96241 0.98785 1.21775 1.00777 0.95899 1.01751 1.21317 0.99370 0.81710 0.97936 1.57484 1.33777 1.17968 1.72818 1.19254 0.77584 0.96356 0.94037 1.21450 0.95303 1.46146 0.93129 0.92283 1.24894 0.95193 0.95266 0.98640 1.69905 0.99732 1.48069 1.36088 0.86616 0.77141 0.78807 0.85228 1.20290 1.21299 1.20055 1.05132 0.74075 0.74613 0.76468 1.93639 1.82380 1.45520 1.69491 1.93493 1.38171 1.79815 1.85388 1.30950 1.11207 1.05344 1.29202 1.21598 0.97139 0.83196 0.93769 0.91407 1.22158 1.01734 0.99675 0.94466 1.21629 1.00090 0.94661 0.99855 1.22218 1.02965 0.97708 0.96661 1.22651 0.95288 0.91373 0.92623 1.88134 1.63009 1.14344 1.63314 0.93875 0.91514 0.92009 0.92318 0.92738 0.92954 0.92320 0.89442 0.90325 0.93513 0.94625 0.92795 0.84193 0.84560 0.90450 0.90609 0.91265 0.91673 0.90768 0.90789 0.88161 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 7.77 37.16 0.29 -1.86 16 2 C -0.12 -1.66 3.14 -90.62 -0.28 -1.94 16 3 C -0.14 -1.66 9.19 37.16 0.34 -1.32 16 4 C 0.12 2.14 5.18 -4.04 -0.02 2.12 16 5 N -0.98 -20.14 2.56 -115.66 -0.30 -20.43 16 6 C 0.25 6.13 4.19 -5.19 -0.02 6.11 16 7 C -0.52 -14.71 9.39 -34.44 -0.32 -15.03 16 8 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 9 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 10 N -0.90 -26.29 13.29 55.43 0.74 -25.55 16 11 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 15 S 2.61 52.20 5.23 -107.50 -0.56 51.63 16 16 O -0.92 -22.77 16.53 -59.87 -0.99 -23.76 16 17 O -0.98 -20.44 16.54 -57.54 -0.95 -21.39 16 18 C -0.64 -9.44 5.87 37.16 0.22 -9.22 16 19 C 0.10 1.41 2.64 -26.68 -0.07 1.34 16 20 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 21 C -0.14 -1.50 5.42 -26.59 -0.14 -1.64 16 22 C -0.12 -1.11 6.03 -26.54 -0.16 -1.27 16 23 C -0.16 -1.47 6.14 -26.59 -0.16 -1.63 16 24 C 0.06 0.68 6.84 37.21 0.25 0.93 16 25 O -0.37 -5.89 9.74 -36.14 -0.35 -6.24 16 26 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 1.08 6.26 -51.93 -0.33 0.76 16 28 H 0.06 0.98 7.96 -51.93 -0.41 0.57 16 29 H 0.06 0.74 6.75 -51.93 -0.35 0.39 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.09 1.58 8.10 -51.92 -0.42 1.16 16 34 H 0.08 1.32 6.85 -51.93 -0.36 0.96 16 35 H 0.05 1.13 5.47 -51.93 -0.28 0.85 16 36 H 0.04 0.94 7.63 -51.93 -0.40 0.55 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 38 H 0.14 2.03 8.14 -51.93 -0.42 1.60 16 39 H 0.14 1.57 6.75 -51.92 -0.35 1.22 16 40 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 377.87 15.07 5.69 5.69 Total: -1.00 -34.25 377.87 -10.28 -44.53 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -8.36 Total: 0.09 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: -0.18 Total: -21.75 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: 0.44 Total: -45.98 kcal Atomic # 8 Polarization: -49.10 SS G_CDS: -2.29 Total: -51.39 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Atomic # 16 Polarization: 52.20 SS G_CDS: -0.56 Total: 51.63 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.25 -10.28 -44.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731672944.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.637 kcal (2) G-P(sol) polarization free energy of solvation -34.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds