Wall clock time and date at job start Tue Mar 31 2020 12:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47467 * 2 1 4 4 C 1.52997 * 109.47056 * 240.00044 * 2 1 3 5 5 C 1.50696 * 109.47344 * 60.00169 * 4 2 1 6 6 O 1.20830 * 119.99625 * 359.97438 * 5 4 2 7 7 O 1.34231 * 120.00431 * 180.02562 * 5 4 2 8 8 C 1.45201 * 117.00260 * 180.02562 * 7 5 4 9 9 C 1.50696 * 109.46879 * 180.02562 * 8 7 5 10 10 O 1.21275 * 120.00125 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99321 * 179.97438 * 9 8 7 12 12 C 1.46503 * 119.99726 * 179.97438 * 11 9 8 13 13 C 1.50705 * 109.47418 * 179.97438 * 12 11 9 14 14 H 1.07997 * 119.99575 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00300 * 179.97438 * 13 12 11 16 16 N 1.31521 * 119.99794 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00251 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47119 * 60.00228 * 17 15 13 19 19 H 1.48496 * 109.47514 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47375 * 300.00577 * 17 15 13 21 21 C 1.50706 * 109.47428 * 120.00093 * 2 1 3 22 22 C 1.38237 * 119.99761 * 300.00365 * 21 2 1 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 2 24 24 C 1.38234 * 120.00220 * 359.94731 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00191 * 119.97467 * 21 2 1 27 27 H 1.09007 * 109.46732 * 299.99668 * 1 2 3 28 28 H 1.08992 * 109.46964 * 59.99919 * 1 2 3 29 29 H 1.08999 * 109.47201 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47368 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.46902 * 300.00766 * 3 2 1 32 32 H 1.09004 * 109.47125 * 59.99963 * 3 2 1 33 33 H 1.09006 * 109.47161 * 180.02562 * 4 2 1 34 34 H 1.08999 * 109.47108 * 300.00048 * 4 2 1 35 35 H 1.09006 * 109.46615 * 299.99760 * 8 7 5 36 36 H 1.08997 * 109.46972 * 59.99472 * 8 7 5 37 37 H 0.96997 * 120.00566 * 359.97438 * 11 9 8 38 38 H 1.08997 * 109.47493 * 299.99985 * 12 11 9 39 39 H 1.09000 * 109.47045 * 59.99621 * 12 11 9 40 40 H 0.97004 * 119.99848 * 179.97438 * 16 15 13 41 41 H 1.08005 * 120.00088 * 359.96779 * 22 21 2 42 42 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 44 44 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 45 45 H 1.07999 * 119.99990 * 0.02562 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 8 0.8427 0.9713 -2.3688 7 8 1.8615 -0.4697 -3.6989 8 6 1.3429 0.2649 -4.8389 9 6 1.8063 -0.3928 -6.1132 10 8 2.5051 -1.3827 -6.0652 11 7 1.4439 0.1193 -7.3060 12 6 1.8948 -0.5196 -8.5449 13 6 1.3554 0.2420 -9.7282 14 1 0.7388 1.1149 -9.5729 15 6 1.6499 -0.1750 -11.0089 16 7 2.4013 -1.2378 -11.1979 17 14 0.9819 0.7694 -12.4755 18 1 1.4778 2.1685 -12.4309 19 1 1.4389 0.1217 -13.7312 20 1 -0.5024 0.7687 -12.4304 21 6 2.0324 -0.7104 1.2305 22 6 1.6984 -0.2382 2.4860 23 6 2.1588 -0.8902 3.6147 24 6 2.9523 -2.0150 3.4878 25 6 3.2903 -2.4844 2.2323 26 6 2.8267 -1.8346 1.1036 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6768 1.9564 0.8900 33 1 3.1300 -0.7216 -1.2490 34 1 1.6766 -1.7489 -1.2492 35 1 0.2533 0.2650 -4.8059 36 1 1.7075 1.2916 -4.8060 37 1 0.8846 0.9109 -7.3444 38 1 2.9843 -0.5194 -8.5782 39 1 1.5306 -1.5465 -8.5774 40 1 2.6082 -1.5314 -12.0990 41 1 1.0778 0.6402 2.5851 42 1 1.8982 -0.5210 4.5956 43 1 3.3117 -2.5245 4.3697 44 1 3.9138 -3.3606 2.1332 45 1 3.0876 -2.2036 0.1227 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000743085991.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:54 Heat of formation + Delta-G solvation = -106.514887 kcal Electronic energy + Delta-G solvation = -25701.971578 eV Core-core repulsion = 21877.288453 eV Total energy + Delta-G solvation = -3824.683125 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.10461 -39.83547 -38.75716 -37.03777 -35.67635 -34.26529 -32.42739 -31.46210 -30.38659 -29.63751 -28.37165 -27.45656 -26.54051 -23.61304 -22.82947 -22.53239 -21.19519 -19.97898 -19.45859 -18.10218 -17.44496 -17.01273 -16.80235 -16.14276 -15.54064 -15.31040 -15.20319 -15.01846 -15.00302 -14.39737 -14.33441 -14.01154 -13.67234 -13.54150 -13.36688 -12.87815 -12.81339 -12.41267 -12.34599 -12.11593 -12.00084 -11.93277 -11.73471 -11.58683 -11.27188 -11.15192 -11.04375 -10.91012 -10.87217 -10.62484 -10.35984 -10.16800 -9.47127 -9.20766 -9.19457 -8.98183 -8.79269 -8.00668 -6.20750 -4.28433 1.06684 1.11070 2.07716 2.40245 3.15987 3.23308 3.28311 3.29691 3.49202 3.92573 4.18293 4.30886 4.39634 4.62697 4.69249 4.70905 4.77705 4.86480 4.96909 5.14404 5.15163 5.17243 5.21097 5.26720 5.28701 5.31087 5.32578 5.52172 5.63269 5.66179 5.76105 5.76448 5.82788 5.99031 6.14467 6.19303 6.23355 6.33506 6.49692 6.70969 7.20871 7.28908 7.44104 7.57492 7.68076 7.90605 8.48138 8.69419 8.94585 9.37969 10.89286 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.037238 B = 0.001908 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.737409 B =14673.426104 C =15223.495154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.010 4.010 3 C -0.153 4.153 4 C -0.109 4.109 5 C 0.463 3.537 6 O -0.503 6.503 7 O -0.329 6.329 8 C 0.049 3.951 9 C 0.499 3.501 10 O -0.535 6.535 11 N -0.707 5.707 12 C 0.251 3.749 13 C -0.546 4.546 14 H 0.064 0.936 15 C 0.064 3.936 16 N -0.885 5.885 17 Si 0.906 3.094 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 C -0.066 4.066 22 C -0.113 4.113 23 C -0.119 4.119 24 C -0.127 4.127 25 C -0.116 4.116 26 C -0.125 4.125 27 H 0.057 0.943 28 H 0.086 0.914 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.086 0.914 32 H 0.057 0.943 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.393 0.607 38 H 0.029 0.971 39 H 0.029 0.971 40 H 0.267 0.733 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.122 0.878 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.748 2.501 28.683 28.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.010 4.010 3 C -0.209 4.209 4 C -0.146 4.146 5 C 0.307 3.693 6 O -0.392 6.392 7 O -0.244 6.244 8 C -0.029 4.029 9 C 0.282 3.718 10 O -0.412 6.412 11 N -0.357 5.357 12 C 0.131 3.869 13 C -0.585 4.585 14 H 0.082 0.918 15 C -0.140 4.140 16 N -0.522 5.522 17 Si 0.733 3.267 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.200 1.200 21 C -0.066 4.066 22 C -0.130 4.130 23 C -0.137 4.137 24 C -0.145 4.145 25 C -0.134 4.134 26 C -0.143 4.143 27 H 0.076 0.924 28 H 0.105 0.895 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.105 0.895 32 H 0.076 0.924 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.226 0.774 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.077 0.923 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.140 0.860 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.352 1.940 28.524 28.622 hybrid contribution -0.619 0.877 -0.852 1.371 sum -1.972 2.817 27.672 27.885 Atomic orbital electron populations 1.22155 0.92766 1.02143 1.03881 1.19283 0.96682 0.95360 0.89641 1.22155 1.00693 0.94212 1.03881 1.21616 1.03579 1.00864 0.88566 1.23693 0.77627 0.82989 0.85014 1.90548 1.35763 1.26043 1.86879 1.86575 1.68986 1.54629 1.14203 1.22859 1.00347 0.96122 0.83552 1.19907 0.82026 0.85315 0.84579 1.90708 1.37657 1.25663 1.87162 1.46370 1.51855 1.31222 1.06240 1.19173 0.95876 0.93717 0.78128 1.21171 1.33471 1.13253 0.90573 0.91813 1.24953 0.94837 0.95094 0.99100 1.69967 1.36087 1.23597 1.22516 0.86440 0.79270 0.79822 0.81174 1.20037 1.21035 1.20041 1.19767 0.97298 0.95415 0.94150 1.20957 1.00222 1.00075 0.91794 1.21132 0.98144 0.95975 0.98438 1.21155 0.98920 0.96984 0.97489 1.21175 0.99770 0.99886 0.92559 1.21259 0.98162 0.95657 0.99242 0.92406 0.89522 0.92894 0.92893 0.89520 0.92412 0.87151 0.87151 0.88526 0.88518 0.77437 0.95255 0.95257 0.92307 0.86076 0.86196 0.86283 0.86008 0.85412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 7.99 37.16 0.30 -1.08 16 2 C -0.01 -0.08 0.60 -155.66 -0.09 -0.18 16 3 C -0.15 -1.37 7.99 37.16 0.30 -1.08 16 4 C -0.11 -1.00 3.54 -27.89 -0.10 -1.10 16 5 C 0.46 5.70 7.37 36.00 0.27 5.96 16 6 O -0.50 -6.60 11.10 -18.75 -0.21 -6.81 16 7 O -0.33 -4.96 9.75 -45.91 -0.45 -5.41 16 8 C 0.05 0.72 5.94 36.00 0.21 0.93 16 9 C 0.50 9.86 7.91 -10.99 -0.09 9.78 16 10 O -0.53 -12.96 16.50 -14.10 -0.23 -13.19 16 11 N -0.71 -14.46 5.55 -61.47 -0.34 -14.80 16 12 C 0.25 6.53 5.43 -5.19 -0.03 6.51 16 13 C -0.55 -14.56 9.28 -34.44 -0.32 -14.88 16 14 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 15 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 16 N -0.88 -25.72 13.29 55.43 0.74 -24.99 16 17 Si 0.91 20.58 29.54 -169.99 -5.02 15.56 16 18 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 21 C -0.07 -0.56 4.76 -104.62 -0.50 -1.06 16 22 C -0.11 -0.89 8.71 -39.58 -0.34 -1.24 16 23 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 24 C -0.13 -0.92 10.05 -39.58 -0.40 -1.32 16 25 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 26 C -0.13 -1.02 8.98 -39.58 -0.36 -1.38 16 27 H 0.06 0.46 7.39 -51.92 -0.38 0.08 16 28 H 0.09 0.92 5.52 -51.93 -0.29 0.64 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.92 5.52 -51.93 -0.29 0.64 16 32 H 0.06 0.46 7.39 -51.93 -0.38 0.08 16 33 H 0.11 0.89 7.51 -51.93 -0.39 0.50 16 34 H 0.11 0.89 7.51 -51.93 -0.39 0.50 16 35 H 0.10 1.23 8.13 -51.93 -0.42 0.81 16 36 H 0.10 1.23 8.13 -51.93 -0.42 0.81 16 37 H 0.39 6.72 8.32 -40.82 -0.34 6.38 16 38 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.12 0.83 7.10 -52.48 -0.37 0.45 16 42 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 43 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 44 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 45 H 0.13 0.90 5.90 -52.49 -0.31 0.59 16 LS Contribution 372.22 15.07 5.61 5.61 Total: -1.00 -32.84 372.22 -8.43 -41.26 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -6.48 Total: 3.78 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -2.04 Total: -1.02 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.40 Total: -39.78 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.89 Total: -25.41 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.84 -8.43 -41.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743085991.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.251 kcal (2) G-P(sol) polarization free energy of solvation -32.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds