Wall clock time and date at job start Tue Mar 31 2020 12:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47467 * 2 1 4 4 C 1.52997 * 109.47056 * 240.00044 * 2 1 3 5 5 C 1.50696 * 109.47344 * 60.00169 * 4 2 1 6 6 O 1.20830 * 119.99625 * 359.97438 * 5 4 2 7 7 O 1.34231 * 120.00431 * 180.02562 * 5 4 2 8 8 C 1.45201 * 117.00260 * 180.02562 * 7 5 4 9 9 C 1.50696 * 109.46879 * 180.02562 * 8 7 5 10 10 O 1.21275 * 120.00125 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99321 * 179.97438 * 9 8 7 12 12 C 1.46503 * 119.99726 * 179.97438 * 11 9 8 13 13 C 1.50705 * 109.47418 * 179.97438 * 12 11 9 14 14 H 1.07997 * 119.99575 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00300 * 179.97438 * 13 12 11 16 16 N 1.31521 * 119.99794 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00251 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47119 * 60.00228 * 17 15 13 19 19 H 1.48496 * 109.47514 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47375 * 300.00577 * 17 15 13 21 21 C 1.50706 * 109.47428 * 120.00093 * 2 1 3 22 22 C 1.38237 * 119.99761 * 300.00365 * 21 2 1 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 2 24 24 C 1.38234 * 120.00220 * 359.94731 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00191 * 119.97467 * 21 2 1 27 27 H 1.09007 * 109.46732 * 299.99668 * 1 2 3 28 28 H 1.08992 * 109.46964 * 59.99919 * 1 2 3 29 29 H 1.08999 * 109.47201 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47368 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.46902 * 300.00766 * 3 2 1 32 32 H 1.09004 * 109.47125 * 59.99963 * 3 2 1 33 33 H 1.09006 * 109.47161 * 180.02562 * 4 2 1 34 34 H 1.08999 * 109.47108 * 300.00048 * 4 2 1 35 35 H 1.09006 * 109.46615 * 299.99760 * 8 7 5 36 36 H 1.08997 * 109.46972 * 59.99472 * 8 7 5 37 37 H 0.96997 * 120.00566 * 359.97438 * 11 9 8 38 38 H 1.08997 * 109.47493 * 299.99985 * 12 11 9 39 39 H 1.09000 * 109.47045 * 59.99621 * 12 11 9 40 40 H 0.97004 * 119.99848 * 179.97438 * 16 15 13 41 41 H 1.08005 * 120.00088 * 359.96779 * 22 21 2 42 42 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 44 44 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 45 45 H 1.07999 * 119.99990 * 0.02562 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 8 0.8427 0.9713 -2.3688 7 8 1.8615 -0.4697 -3.6989 8 6 1.3429 0.2649 -4.8389 9 6 1.8063 -0.3928 -6.1132 10 8 2.5051 -1.3827 -6.0652 11 7 1.4439 0.1193 -7.3060 12 6 1.8948 -0.5196 -8.5449 13 6 1.3554 0.2420 -9.7282 14 1 0.7388 1.1149 -9.5729 15 6 1.6499 -0.1750 -11.0089 16 7 2.4013 -1.2378 -11.1979 17 14 0.9819 0.7694 -12.4755 18 1 1.4778 2.1685 -12.4309 19 1 1.4389 0.1217 -13.7312 20 1 -0.5024 0.7687 -12.4304 21 6 2.0324 -0.7104 1.2305 22 6 1.6984 -0.2382 2.4860 23 6 2.1588 -0.8902 3.6147 24 6 2.9523 -2.0150 3.4878 25 6 3.2903 -2.4844 2.2323 26 6 2.8267 -1.8346 1.1036 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6768 1.9564 0.8900 33 1 3.1300 -0.7216 -1.2490 34 1 1.6766 -1.7489 -1.2492 35 1 0.2533 0.2650 -4.8059 36 1 1.7075 1.2916 -4.8060 37 1 0.8846 0.9109 -7.3444 38 1 2.9843 -0.5194 -8.5782 39 1 1.5306 -1.5465 -8.5774 40 1 2.6082 -1.5314 -12.0990 41 1 1.0778 0.6402 2.5851 42 1 1.8982 -0.5210 4.5956 43 1 3.3117 -2.5245 4.3697 44 1 3.9138 -3.3606 2.1332 45 1 3.0876 -2.2036 0.1227 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000743085991.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:53 Heat of formation + Delta-G solvation = -125.327302 kcal Electronic energy + Delta-G solvation = -25702.787346 eV Core-core repulsion = 21877.288453 eV Total energy + Delta-G solvation = -3825.498893 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.04495 -40.74988 -40.16816 -38.01603 -36.52362 -36.17525 -34.41801 -32.05323 -31.23667 -30.66723 -29.55646 -28.17377 -28.16479 -24.76547 -24.11346 -23.32624 -22.12055 -21.63887 -20.21651 -19.13892 -18.99414 -17.89522 -17.84391 -17.65308 -16.99389 -16.74281 -16.33134 -16.00001 -15.87635 -15.70162 -15.29149 -14.86440 -14.65306 -14.57879 -14.31435 -14.16621 -13.97055 -13.81943 -13.44900 -13.43220 -13.04150 -12.94783 -12.79588 -12.68652 -12.53182 -12.33274 -12.24323 -11.97184 -11.81857 -11.69954 -11.52826 -11.49385 -11.08839 -10.86855 -10.80768 -9.93240 -9.76338 -9.55864 -8.29593 -6.46427 0.49942 0.55432 1.11904 1.29389 1.44849 1.47849 1.55938 1.56388 2.34298 2.58634 2.92818 3.05478 3.44130 3.61494 3.73253 3.93389 3.93938 4.08396 4.08435 4.18910 4.20181 4.28689 4.35255 4.54506 4.60500 4.66849 4.73078 4.83646 4.96123 5.01946 5.03895 5.07649 5.18172 5.21493 5.21617 5.22671 5.41501 5.41620 5.54203 5.63032 5.69083 5.69362 5.74613 5.81851 6.16923 6.61796 6.65342 6.79714 7.20413 7.35912 8.82213 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.037238 B = 0.001908 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.737409 B =14673.426104 C =15223.495154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.004 4.004 3 C -0.150 4.150 4 C -0.107 4.107 5 C 0.464 3.536 6 O -0.510 6.510 7 O -0.351 6.351 8 C 0.061 3.939 9 C 0.498 3.502 10 O -0.585 6.585 11 N -0.699 5.699 12 C 0.266 3.734 13 C -0.559 4.559 14 H 0.086 0.914 15 C 0.004 3.996 16 N -0.930 5.930 17 Si 0.986 3.014 18 H -0.262 1.262 19 H -0.286 1.286 20 H -0.262 1.262 21 C -0.075 4.075 22 C -0.122 4.122 23 C -0.125 4.125 24 C -0.134 4.134 25 C -0.126 4.126 26 C -0.138 4.138 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.412 0.588 38 H -0.008 1.008 39 H -0.008 1.008 40 H 0.269 0.731 41 H 0.129 0.871 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.135 0.865 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.805 4.001 29.938 30.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.004 4.004 3 C -0.207 4.207 4 C -0.144 4.144 5 C 0.309 3.691 6 O -0.399 6.399 7 O -0.267 6.267 8 C -0.016 4.016 9 C 0.284 3.716 10 O -0.465 6.465 11 N -0.351 5.351 12 C 0.144 3.856 13 C -0.596 4.596 14 H 0.104 0.896 15 C -0.195 4.195 16 N -0.568 5.568 17 Si 0.809 3.191 18 H -0.187 1.187 19 H -0.212 1.212 20 H -0.187 1.187 21 C -0.075 4.075 22 C -0.140 4.140 23 C -0.143 4.143 24 C -0.152 4.152 25 C -0.144 4.144 26 C -0.156 4.156 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.249 0.751 38 H 0.010 0.990 39 H 0.010 0.990 40 H 0.078 0.922 41 H 0.147 0.853 42 H 0.156 0.844 43 H 0.155 0.845 44 H 0.153 0.847 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.443 3.487 29.821 30.124 hybrid contribution -0.264 0.373 -1.122 1.211 sum -2.707 3.860 28.699 29.084 Atomic orbital electron populations 1.22107 0.93022 1.02067 1.03461 1.19210 0.96404 0.95152 0.89596 1.22107 1.00723 0.94363 1.03461 1.21760 1.04310 1.01180 0.87178 1.24219 0.77313 0.82981 0.84628 1.90556 1.36137 1.26458 1.86770 1.86577 1.69681 1.55399 1.15058 1.22704 1.01645 0.96201 0.81019 1.20762 0.80559 0.84442 0.85838 1.90682 1.39808 1.28027 1.88012 1.46049 1.52156 1.31707 1.05160 1.18622 0.93556 0.92541 0.80888 1.21586 1.33491 1.13786 0.90764 0.89586 1.26056 0.94878 0.95942 1.02668 1.70130 1.37691 1.25611 1.23361 0.85195 0.78966 0.78461 0.76522 1.18684 1.21166 1.18694 1.19746 0.97912 0.95765 0.94078 1.21138 1.00480 1.00524 0.91853 1.21414 0.97846 0.95918 0.99151 1.21457 0.98611 0.97018 0.98086 1.21433 0.99947 1.00393 0.92649 1.21433 0.98399 0.95826 0.99912 0.91527 0.91148 0.92791 0.92785 0.91144 0.91534 0.85962 0.85968 0.85865 0.85852 0.75134 0.98992 0.98998 0.92204 0.85272 0.84389 0.84498 0.84673 0.84778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 7.99 71.98 0.58 -1.95 16 2 C 0.00 -0.06 0.60 -52.93 -0.03 -0.09 16 3 C -0.15 -2.52 7.99 71.98 0.58 -1.94 16 4 C -0.11 -1.85 3.54 29.85 0.11 -1.74 16 5 C 0.46 10.87 7.37 71.23 0.53 11.40 16 6 O -0.51 -12.68 11.10 21.95 0.24 -12.44 16 7 O -0.35 -10.28 9.75 -45.07 -0.44 -10.72 16 8 C 0.06 1.71 5.94 71.23 0.42 2.13 16 9 C 0.50 19.79 7.91 87.66 0.69 20.49 16 10 O -0.58 -29.31 16.50 15.79 0.26 -29.05 16 11 N -0.70 -28.69 5.55 -466.79 -2.59 -31.28 16 12 C 0.27 14.35 5.43 85.63 0.46 14.82 16 13 C -0.56 -29.79 9.28 25.60 0.24 -29.56 16 14 H 0.09 4.10 7.60 -2.91 -0.02 4.08 16 15 C 0.00 0.24 5.46 84.65 0.46 0.70 16 16 N -0.93 -55.41 13.29 21.45 0.28 -55.13 16 17 Si 0.99 41.71 29.54 68.60 2.03 43.74 16 18 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 19 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 20 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 21 C -0.07 -1.16 4.76 -19.86 -0.09 -1.26 16 22 C -0.12 -1.74 8.71 22.27 0.19 -1.54 16 23 C -0.13 -1.59 10.05 22.27 0.22 -1.37 16 24 C -0.13 -1.69 10.05 22.27 0.22 -1.46 16 25 C -0.13 -1.73 10.05 22.27 0.22 -1.50 16 26 C -0.14 -2.07 8.98 22.27 0.20 -1.87 16 27 H 0.07 0.98 7.39 -2.38 -0.02 0.96 16 28 H 0.07 1.43 5.52 -2.39 -0.01 1.42 16 29 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 1.43 5.52 -2.39 -0.01 1.42 16 32 H 0.07 0.98 7.39 -2.38 -0.02 0.96 16 33 H 0.12 1.83 7.51 -2.38 -0.02 1.81 16 34 H 0.12 1.83 7.51 -2.39 -0.02 1.81 16 35 H 0.12 2.83 8.13 -2.38 -0.02 2.81 16 36 H 0.12 2.83 8.13 -2.39 -0.02 2.81 16 37 H 0.41 13.56 8.32 -92.71 -0.77 12.78 16 38 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 39 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 40 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 41 H 0.13 1.54 7.10 -2.91 -0.02 1.52 16 42 H 0.14 1.16 8.06 -2.91 -0.02 1.14 16 43 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 44 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 45 H 0.13 1.72 5.90 -2.91 -0.02 1.70 16 Total: -1.00 -72.93 372.22 5.02 -67.91 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: 0.23 Total: 21.70 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: 5.00 Total: 5.26 kcal Atomic # 7 Polarization: -84.10 SS G_CDS: -2.30 Total: -86.41 kcal Atomic # 8 Polarization: -52.27 SS G_CDS: 0.06 Total: -52.20 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -72.93 5.02 -67.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743085991.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.415 kcal (2) G-P(sol) polarization free energy of solvation -72.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds