Wall clock time and date at job start Tue Mar 31 2020 12:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46493 * 120.00005 * 2 1 4 4 C 1.53001 * 109.46946 * 89.99922 * 3 2 1 5 5 C 1.53000 * 109.47134 * 60.00140 * 4 3 2 6 6 C 1.53006 * 109.47008 * 179.97438 * 4 3 2 7 7 C 1.52993 * 109.47287 * 299.99716 * 4 3 2 8 8 C 1.34777 * 119.99667 * 179.97438 * 2 1 3 9 9 O 1.21554 * 119.99840 * 186.79864 * 8 2 1 10 10 C 1.47867 * 120.00344 * 6.80600 * 8 2 1 11 11 C 1.39723 * 120.06600 * 20.54855 * 10 8 2 12 12 C 1.38076 * 120.15873 * 179.76744 * 11 10 8 13 13 C 1.38068 * 120.30519 * 0.51411 * 12 11 10 14 14 C 1.39750 * 120.13839 * 359.74439 * 13 12 11 15 15 C 1.47683 * 120.08578 * 180.02562 * 14 13 12 16 16 O 1.21494 * 120.00328 * 179.97438 * 15 14 13 17 17 O 1.34733 * 119.99436 * 359.97438 * 15 14 13 18 18 C 1.34852 * 116.99559 * 180.02562 * 17 15 14 19 19 H 1.07996 * 120.00386 * 359.97438 * 18 17 15 20 20 C 1.38815 * 119.99992 * 179.97438 * 18 17 15 21 21 N 1.31408 * 120.00103 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 120.00119 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46852 * 60.00318 * 22 20 18 24 24 H 1.48501 * 109.47179 * 180.02562 * 22 20 18 25 25 H 1.48492 * 109.47200 * 300.00364 * 22 20 18 26 26 C 1.39270 * 120.07043 * 200.82746 * 10 8 2 27 27 H 1.09002 * 109.46943 * 85.51828 * 1 2 3 28 28 H 1.08994 * 109.47075 * 205.52035 * 1 2 3 29 29 H 1.08997 * 109.46847 * 325.52222 * 1 2 3 30 30 H 1.09007 * 109.47186 * 209.99660 * 3 2 1 31 31 H 1.08999 * 109.47431 * 330.00000 * 3 2 1 32 32 H 1.08998 * 109.47265 * 59.99932 * 5 4 3 33 33 H 1.08998 * 109.47030 * 179.97438 * 5 4 3 34 34 H 1.08998 * 109.47078 * 299.99570 * 5 4 3 35 35 H 1.08998 * 109.46695 * 59.99914 * 6 4 3 36 36 H 1.08998 * 109.47263 * 180.02562 * 6 4 3 37 37 H 1.08998 * 109.47442 * 300.00100 * 6 4 3 38 38 H 1.08998 * 109.47067 * 60.00343 * 7 4 3 39 39 H 1.08998 * 109.47135 * 180.02562 * 7 4 3 40 40 H 1.08999 * 109.47180 * 299.99978 * 7 4 3 41 41 H 1.07999 * 119.91864 * 0.02873 * 11 10 8 42 42 H 1.07995 * 119.84769 * 180.25511 * 12 11 10 43 43 H 1.08004 * 119.93231 * 179.72116 * 13 12 11 44 44 H 0.97006 * 120.00533 * 179.97438 * 21 20 18 45 45 H 1.07996 * 120.15061 * 359.95704 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 1.4425 5 6 3.2794 0.6440 2.1638 6 6 3.2181 3.0351 1.4425 7 6 1.1157 1.8933 2.1637 8 6 2.1389 -1.1672 0.0005 9 8 3.3480 -1.1709 0.1251 10 6 1.4074 -2.4434 -0.1507 11 6 0.1275 -2.4544 -0.7110 12 6 -0.5554 -3.6455 -0.8575 13 6 0.0160 -4.8318 -0.4423 14 6 1.2933 -4.8347 0.1248 15 6 1.9036 -6.1044 0.5681 16 8 3.0143 -6.1052 1.0605 17 8 1.2287 -7.2618 0.4263 18 6 1.8426 -8.3845 0.8518 19 1 2.8314 -8.3292 1.2825 20 6 1.2037 -9.6114 0.7361 21 7 0.0007 -9.6789 0.2116 22 14 2.0545 -11.1668 1.3248 23 1 2.3488 -11.0511 2.7757 24 1 1.1678 -12.3349 1.0908 25 1 3.3231 -11.3510 0.5755 26 6 1.9903 -3.6360 0.2705 27 1 -0.3633 0.0803 -1.0245 28 1 -0.3633 -0.9273 0.4427 29 1 -0.3633 0.8471 0.5817 30 1 3.1500 1.1383 -0.5138 31 1 1.6085 2.0284 -0.5138 32 1 4.2318 0.5137 1.6500 33 1 3.4614 0.9589 3.1913 34 1 2.7344 -0.2999 2.1638 35 1 2.6294 3.7948 0.9285 36 1 3.4001 3.3495 2.4702 37 1 4.1705 2.9044 0.9289 38 1 0.5707 0.9494 2.1637 39 1 1.2973 2.2084 3.1912 40 1 0.5266 2.6530 1.6499 41 1 -0.3271 -1.5296 -1.0343 42 1 -1.5427 -3.6487 -1.2951 43 1 -0.5253 -5.7595 -0.5556 44 1 -0.4457 -10.5363 0.1304 45 1 2.9778 -3.6324 0.7078 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745185170.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:01 Heat of formation + Delta-G solvation = -93.494275 kcal Electronic energy + Delta-G solvation = -26814.810603 eV Core-core repulsion = 22990.692094 eV Total energy + Delta-G solvation = -3824.118509 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.88022 -41.11680 -39.47434 -38.11098 -37.32847 -35.92155 -34.40086 -32.59788 -32.16763 -29.04775 -28.25270 -28.07109 -27.58424 -27.13726 -25.06026 -24.05023 -22.14998 -21.12335 -19.95389 -19.72536 -18.99156 -17.82931 -17.70836 -17.09761 -17.08359 -16.66747 -16.48126 -16.29731 -15.58425 -15.40815 -15.13429 -14.94884 -14.67167 -14.59375 -14.23711 -14.11894 -13.77849 -13.69211 -13.53853 -13.21508 -13.09391 -13.01087 -12.63169 -12.50307 -12.46703 -12.44834 -12.19527 -12.11748 -12.03940 -11.96246 -11.61504 -11.55543 -11.25847 -10.88766 -10.76160 -10.13993 -10.06179 -9.58637 -8.61939 -6.39097 -0.40711 -0.06364 1.31305 1.32615 1.46964 1.54520 1.84436 1.98450 2.08870 2.63340 2.72928 2.97871 3.40862 3.81342 3.84428 3.85554 3.90356 4.01049 4.10904 4.19721 4.32176 4.36601 4.50643 4.58075 4.61460 4.74271 4.77013 4.79265 4.82684 4.88623 4.90310 4.94144 5.04583 5.05786 5.08064 5.15634 5.19596 5.28340 5.32641 5.34509 5.42575 5.49790 5.60322 5.74449 5.75231 6.29389 6.52135 6.82135 7.09174 7.63215 8.58076 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.026326 B = 0.002670 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.317219 B =10482.898159 C =11136.409531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.599 5.599 3 C 0.125 3.875 4 C -0.084 4.084 5 C -0.129 4.129 6 C -0.135 4.135 7 C -0.141 4.141 8 C 0.557 3.443 9 O -0.571 6.571 10 C -0.154 4.154 11 C -0.063 4.063 12 C -0.117 4.117 13 C -0.051 4.051 14 C -0.129 4.129 15 C 0.428 3.572 16 O -0.587 6.587 17 O -0.225 6.225 18 C -0.425 4.425 19 H 0.079 0.921 20 C 0.002 3.998 21 N -0.891 5.891 22 Si 1.018 2.982 23 H -0.262 1.262 24 H -0.253 1.253 25 H -0.263 1.263 26 C -0.027 4.027 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.061 0.939 31 H 0.117 0.883 32 H 0.037 0.963 33 H 0.048 0.952 34 H 0.028 0.972 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.047 0.953 38 H 0.054 0.946 39 H 0.051 0.949 40 H 0.080 0.920 41 H 0.203 0.797 42 H 0.185 0.815 43 H 0.132 0.868 44 H 0.283 0.717 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.632 26.335 -2.559 27.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 N -0.330 5.330 3 C 0.003 3.997 4 C -0.085 4.085 5 C -0.187 4.187 6 C -0.192 4.192 7 C -0.198 4.198 8 C 0.347 3.653 9 O -0.451 6.451 10 C -0.157 4.157 11 C -0.080 4.080 12 C -0.135 4.135 13 C -0.069 4.069 14 C -0.130 4.130 15 C 0.278 3.722 16 O -0.487 6.487 17 O -0.132 6.132 18 C -0.500 4.500 19 H 0.096 0.904 20 C -0.200 4.200 21 N -0.528 5.528 22 Si 0.836 3.164 23 H -0.187 1.187 24 H -0.177 1.177 25 H -0.188 1.188 26 C -0.046 4.046 27 H 0.116 0.884 28 H 0.105 0.895 29 H 0.119 0.881 30 H 0.080 0.920 31 H 0.135 0.865 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.047 0.953 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.099 0.901 41 H 0.220 0.780 42 H 0.202 0.798 43 H 0.150 0.850 44 H 0.093 0.907 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -6.935 26.193 -2.437 27.205 hybrid contribution 1.198 -1.443 0.643 1.983 sum -5.737 24.750 -1.793 25.469 Atomic orbital electron populations 1.22987 0.77324 1.05451 1.04217 1.47657 1.08413 1.04708 1.72191 1.21732 0.97453 0.84196 0.96333 1.20987 0.96666 0.95593 0.95298 1.21812 0.99441 0.97958 0.99469 1.21773 0.99793 0.95319 1.02349 1.21973 0.95491 1.02084 1.00215 1.18301 0.86520 0.84272 0.76236 1.90776 1.15911 1.87554 1.50867 1.19817 0.97415 0.92066 1.06386 1.22948 0.90910 1.01413 0.92709 1.21606 1.02345 0.89858 0.99666 1.21896 0.92007 1.01093 0.91939 1.19131 0.97608 0.89605 1.06685 1.21804 0.84546 0.86168 0.79713 1.90586 1.22672 1.88094 1.47363 1.83892 1.45455 1.14419 1.69460 1.21453 1.02493 0.82930 1.43146 0.90350 1.26548 0.96532 1.01311 0.95565 1.70017 1.13548 1.28280 1.40917 0.84688 0.78052 0.74527 0.79089 1.18686 1.17651 1.18783 1.21060 0.98382 0.90593 0.94615 0.88397 0.89454 0.88127 0.92046 0.86510 0.94358 0.93245 0.95298 0.90325 0.92335 0.93353 0.92738 0.92968 0.90071 0.78027 0.79788 0.85035 0.90748 0.87370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 7.70 127.77 0.98 1.31 16 2 N -0.60 -10.55 2.40 -850.17 -2.04 -12.59 16 3 C 0.12 1.90 4.61 86.38 0.40 2.30 16 4 C -0.08 -1.31 0.84 -52.18 -0.04 -1.36 16 5 C -0.13 -3.14 7.05 71.98 0.51 -2.63 16 6 C -0.13 -1.63 8.47 71.98 0.61 -1.02 16 7 C -0.14 -1.62 7.23 71.98 0.52 -1.10 16 8 C 0.56 15.84 6.14 86.79 0.53 16.37 16 9 O -0.57 -21.27 13.80 -3.88 -0.05 -21.33 16 10 C -0.15 -4.52 5.56 -20.12 -0.11 -4.63 16 11 C -0.06 -1.21 7.60 22.59 0.17 -1.04 16 12 C -0.12 -2.54 10.02 22.19 0.22 -2.32 16 13 C -0.05 -1.75 9.61 22.60 0.22 -1.53 16 14 C -0.13 -5.65 5.87 -20.13 -0.12 -5.77 16 15 C 0.43 24.23 7.83 70.32 0.55 24.78 16 16 O -0.59 -36.59 15.59 19.85 0.31 -36.28 16 17 O -0.22 -13.84 8.98 11.36 0.10 -13.74 16 18 C -0.42 -26.79 9.65 67.96 0.66 -26.14 16 19 H 0.08 5.08 6.86 -2.91 -0.02 5.06 16 20 C 0.00 0.12 5.50 84.89 0.47 0.59 16 21 N -0.89 -52.15 13.67 21.63 0.30 -51.86 16 22 Si 1.02 44.03 29.55 68.60 2.03 46.06 16 23 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 24 H -0.25 -9.85 7.11 99.48 0.71 -9.15 16 25 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 26 C -0.03 -1.08 9.13 22.80 0.21 -0.87 16 27 H 0.10 0.22 7.05 -2.39 -0.02 0.20 16 28 H 0.09 0.84 5.17 -2.39 -0.01 0.82 16 29 H 0.10 0.42 5.86 -2.39 -0.01 0.40 16 30 H 0.06 1.25 7.53 -2.38 -0.02 1.23 16 31 H 0.12 0.88 8.07 -2.39 -0.02 0.86 16 32 H 0.04 1.09 7.60 -2.39 -0.02 1.07 16 33 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.03 0.83 6.03 -2.39 -0.01 0.82 16 35 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.05 0.71 5.91 -2.39 -0.01 0.69 16 39 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.08 0.52 8.10 -2.39 -0.02 0.50 16 41 H 0.20 1.80 4.05 -2.91 -0.01 1.79 16 42 H 0.18 2.24 8.06 -2.91 -0.02 2.21 16 43 H 0.13 4.91 7.60 -2.91 -0.02 4.89 16 44 H 0.28 14.89 8.31 -92.70 -0.77 14.12 16 45 H 0.11 5.02 7.37 -2.91 -0.02 5.00 16 Total: -1.00 -86.77 362.41 7.42 -79.35 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 1.01 Total: 13.46 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: 5.77 Total: -3.07 kcal Atomic # 7 Polarization: -62.71 SS G_CDS: -1.74 Total: -64.45 kcal Atomic # 8 Polarization: -71.71 SS G_CDS: 0.36 Total: -71.35 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -86.77 7.42 -79.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745185170.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.141 kcal (2) G-P(sol) polarization free energy of solvation -86.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds