Wall clock time and date at job start Tue Mar 31 2020 13:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47034 * 2 1 4 4 C 1.53002 * 109.47120 * 120.00006 * 2 1 3 5 5 N 1.46504 * 109.47000 * 65.00310 * 4 2 1 6 6 C 1.46502 * 119.99748 * 270.00151 * 5 4 2 7 7 C 1.50701 * 109.46741 * 269.99549 * 6 5 4 8 8 H 1.08004 * 120.00400 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00123 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99953 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00365 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47082 * 89.99851 * 11 9 7 13 13 H 1.48496 * 109.47136 * 210.00102 * 11 9 7 14 14 H 1.48503 * 109.47224 * 330.00250 * 11 9 7 15 15 C 1.34776 * 119.99997 * 89.99882 * 5 4 2 16 16 O 1.21283 * 119.99966 * 180.02562 * 15 5 4 17 17 C 1.50704 * 120.00015 * 359.97438 * 15 5 4 18 18 C 1.50699 * 109.46850 * 180.02562 * 17 15 5 19 19 C 1.38247 * 119.92634 * 270.01861 * 18 17 15 20 20 C 1.38240 * 120.14459 * 179.75199 * 19 18 17 21 21 C 1.38552 * 120.02633 * 0.42901 * 20 19 18 22 22 C 1.39265 * 119.82706 * 359.57585 * 21 20 19 23 23 C 1.38231 * 119.92969 * 90.00273 * 18 17 15 24 24 O 1.36496 * 108.64230 * 180.24572 * 22 21 20 25 25 C 1.43981 * 105.48444 * 342.72036 * 24 22 21 26 26 O 1.36505 * 131.53353 * 179.87931 * 21 20 19 27 27 H 1.09003 * 109.47231 * 59.99789 * 1 2 3 28 28 H 1.09008 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47304 * 299.99310 * 1 2 3 30 30 H 1.08995 * 109.46916 * 240.00330 * 2 1 3 31 31 H 1.09004 * 109.47104 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.47399 * 300.00115 * 3 2 1 33 33 H 1.09004 * 109.47147 * 60.00234 * 3 2 1 34 34 H 1.09002 * 109.47352 * 305.00135 * 4 2 1 35 35 H 1.09006 * 109.47042 * 185.00041 * 4 2 1 36 36 H 1.08994 * 109.47065 * 29.99828 * 6 5 4 37 37 H 1.09001 * 109.46810 * 150.00044 * 6 5 4 38 38 H 0.96993 * 120.00361 * 180.02562 * 10 9 7 39 39 H 1.08993 * 109.46905 * 60.00211 * 17 15 5 40 40 H 1.08998 * 109.46686 * 300.00067 * 17 15 5 41 41 H 1.07994 * 119.93290 * 0.02562 * 19 18 17 42 42 H 1.07997 * 119.99327 * 180.33354 * 20 19 18 43 43 H 1.08003 * 119.98943 * 0.02562 * 23 18 17 44 44 H 1.09007 * 110.56955 * 268.54960 * 25 24 22 45 45 H 1.09003 * 110.57719 * 145.67764 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6525 -2.1329 1.1905 6 6 0.3745 -2.5660 1.7611 7 6 0.5716 -2.9410 3.2074 8 1 1.5508 -2.8640 3.6567 9 6 -0.4980 -3.3824 3.9571 10 7 -1.6902 -3.4766 3.4099 11 14 -0.2539 -3.8465 5.7499 12 1 -0.4675 -2.6508 6.6043 13 1 -1.2277 -4.9031 6.1247 14 1 1.1277 -4.3545 5.9461 15 6 2.4716 -3.0330 0.6115 16 8 2.1505 -4.2016 0.5624 17 6 3.7859 -2.5874 0.0239 18 6 4.5053 -3.7771 -0.5575 19 6 5.3704 -4.5128 0.2309 20 6 6.0288 -5.6081 -0.2964 21 6 5.8295 -5.9657 -1.6201 22 6 4.9581 -5.2245 -2.4142 23 6 4.2985 -4.1305 -1.8778 24 8 4.9305 -5.7750 -3.6629 25 6 6.1005 -6.6106 -3.7406 26 8 6.3480 -6.9807 -2.3713 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6054 -0.2618 2.1370 35 1 3.1264 -0.6443 1.2952 36 1 -0.3484 -1.7532 1.6917 37 1 0.0043 -3.4298 1.2090 38 1 -2.4428 -3.7868 3.9373 39 1 4.3989 -2.1375 0.8048 40 1 3.6026 -1.8544 -0.7617 41 1 5.5289 -4.2341 1.2621 42 1 6.6999 -6.1843 0.3232 43 1 3.6223 -3.5538 -2.4914 44 1 6.9443 -6.0514 -4.1448 45 1 5.9003 -7.4947 -4.3460 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751373860.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:11 Heat of formation + Delta-G solvation = -79.692063 kcal Electronic energy + Delta-G solvation = -27058.235278 eV Core-core repulsion = 23234.715278 eV Total energy + Delta-G solvation = -3823.520000 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.14767 -39.48147 -37.82287 -36.30381 -36.25333 -33.56010 -32.42192 -31.94681 -30.38984 -28.43725 -26.97140 -26.81683 -25.66949 -25.24916 -22.99413 -22.93778 -21.70947 -20.22224 -18.47446 -17.92954 -17.46426 -17.36692 -16.52913 -16.33106 -16.14586 -15.51573 -14.81693 -14.51008 -14.46568 -14.24195 -14.10899 -13.83401 -13.48904 -13.28641 -13.12155 -12.99727 -12.74189 -12.36326 -12.20550 -12.08052 -12.03697 -11.58566 -11.54872 -11.32799 -11.08566 -10.93173 -10.90952 -10.80375 -10.67623 -10.43793 -10.25236 -10.10615 -9.56785 -8.97304 -8.72154 -8.40426 -7.96391 -7.60776 -6.02297 -4.06532 1.17989 1.29695 2.73193 3.30654 3.37361 3.38674 3.40853 3.46296 3.54592 4.05376 4.46685 4.52529 4.53363 4.71542 4.87505 4.98898 5.05426 5.15442 5.16587 5.19728 5.28224 5.31813 5.40831 5.48527 5.63627 5.63899 5.72082 5.83298 5.88716 6.04950 6.10496 6.11789 6.16219 6.17996 6.25988 6.30996 6.41606 6.56161 6.59144 6.69936 7.10892 7.15169 7.47417 7.58271 7.94381 8.26749 8.44776 8.92704 9.12612 9.58347 11.05602 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011834 B = 0.003719 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.438346 B = 7527.446410 C = 9040.935602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.144 4.144 4 C 0.114 3.886 5 N -0.595 5.595 6 C 0.243 3.757 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.061 3.939 10 N -0.895 5.895 11 Si 0.896 3.104 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.506 3.494 16 O -0.532 6.532 17 C -0.103 4.103 18 C -0.043 4.043 19 C -0.094 4.094 20 C -0.097 4.097 21 C 0.022 3.978 22 C 0.030 3.970 23 C -0.085 4.085 24 O -0.310 6.310 25 C 0.214 3.786 26 O -0.312 6.312 27 H 0.044 0.956 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.040 0.960 37 H 0.041 0.959 38 H 0.263 0.737 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.132 0.868 44 H 0.080 0.920 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.445 4.974 -11.755 20.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.134 4.134 3 C -0.201 4.201 4 C -0.010 4.010 5 N -0.326 5.326 6 C 0.124 3.876 7 C -0.564 4.564 8 H 0.075 0.925 9 C -0.141 4.141 10 N -0.534 5.534 11 Si 0.724 3.276 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.292 3.708 16 O -0.409 6.409 17 C -0.143 4.143 18 C -0.043 4.043 19 C -0.112 4.112 20 C -0.115 4.115 21 C -0.022 4.022 22 C -0.014 4.014 23 C -0.104 4.104 24 O -0.227 6.227 25 C 0.102 3.898 26 O -0.229 6.229 27 H 0.063 0.937 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.155 0.845 42 H 0.152 0.848 43 H 0.150 0.850 44 H 0.098 0.902 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 15.008 4.097 -11.855 19.560 hybrid contribution 0.051 -0.375 0.834 0.916 sum 15.060 3.723 -11.021 19.029 Atomic orbital electron populations 1.21931 0.94625 1.03105 1.00958 1.21593 0.97140 0.95794 0.98868 1.21784 1.00534 0.96036 1.01793 1.21560 0.99024 0.82431 0.97985 1.48205 1.21786 1.06228 1.56430 1.19390 0.78658 0.96348 0.93192 1.21452 0.95032 1.44342 0.95580 0.92546 1.24920 0.95091 0.95454 0.98614 1.69927 0.99828 1.47090 1.36535 0.86531 0.78063 0.78172 0.84859 1.20700 1.21144 1.19924 1.20121 0.85191 0.86290 0.79245 1.90712 1.74809 1.17349 1.57983 1.20773 0.95752 0.96149 1.01603 1.19088 0.96155 0.97050 0.92050 1.20791 0.96230 0.94406 0.99754 1.19990 1.02261 0.98022 0.91257 1.19753 0.98475 0.89332 0.94620 1.19656 1.00282 0.96800 0.84628 1.19841 1.00592 0.94630 0.95335 1.87350 1.44624 1.60218 1.30482 1.25556 0.86463 0.94048 0.83765 1.87333 1.77625 1.40661 1.17232 0.93667 0.91245 0.92512 0.91606 0.92884 0.92870 0.92494 0.89935 0.91649 0.94176 0.94130 0.92778 0.88092 0.88406 0.84489 0.84841 0.84989 0.90213 0.85489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 8.18 37.16 0.30 -1.89 16 2 C -0.11 -1.47 3.12 -90.62 -0.28 -1.75 16 3 C -0.14 -1.44 9.19 37.16 0.34 -1.10 16 4 C 0.11 1.72 4.70 -4.04 -0.02 1.71 16 5 N -0.60 -11.92 2.28 -175.05 -0.40 -12.32 16 6 C 0.24 6.15 4.23 -5.19 -0.02 6.13 16 7 C -0.53 -14.65 9.39 -34.44 -0.32 -14.98 16 8 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 9 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 10 N -0.89 -26.43 13.29 55.43 0.74 -25.70 16 11 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 15 C 0.51 10.06 7.67 -10.98 -0.08 9.97 16 16 O -0.53 -13.27 15.61 5.56 0.09 -13.18 16 17 C -0.10 -1.42 4.38 -29.03 -0.13 -1.55 16 18 C -0.04 -0.62 4.37 -104.62 -0.46 -1.08 16 19 C -0.09 -1.29 9.69 -39.58 -0.38 -1.68 16 20 C -0.10 -1.30 10.06 -39.46 -0.40 -1.70 16 21 C 0.02 0.32 7.15 -39.08 -0.28 0.04 16 22 C 0.03 0.46 7.15 -39.08 -0.28 0.18 16 23 C -0.09 -1.26 9.71 -39.47 -0.38 -1.64 16 24 O -0.31 -4.29 11.40 -45.68 -0.52 -4.81 16 25 C 0.21 2.15 8.89 101.05 0.90 3.05 16 26 O -0.31 -4.17 11.40 -45.70 -0.52 -4.69 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.07 1.24 5.89 -51.92 -0.31 0.93 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.07 0.83 7.30 -51.93 -0.38 0.45 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 35 H 0.07 0.80 6.44 -51.93 -0.33 0.46 16 36 H 0.04 1.01 5.98 -51.93 -0.31 0.70 16 37 H 0.04 1.19 7.42 -51.93 -0.39 0.80 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.10 1.16 7.34 -51.93 -0.38 0.78 16 40 H 0.10 1.11 7.20 -51.93 -0.37 0.74 16 41 H 0.14 1.65 8.06 -52.49 -0.42 1.23 16 42 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 43 H 0.13 1.77 8.06 -52.48 -0.42 1.34 16 44 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.13 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 371.13 15.07 5.59 5.59 Total: -1.00 -34.66 371.13 -8.30 -42.97 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -6.66 Total: 0.02 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -1.59 Total: -4.66 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.34 Total: -38.01 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.96 Total: -22.68 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.66 -8.30 -42.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751373860.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.727 kcal (2) G-P(sol) polarization free energy of solvation -34.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds