Wall clock time and date at job start Tue Mar 31 2020 13:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47034 * 2 1 4 4 C 1.53002 * 109.47120 * 120.00006 * 2 1 3 5 5 N 1.46504 * 109.47000 * 65.00310 * 4 2 1 6 6 C 1.46502 * 119.99748 * 270.00151 * 5 4 2 7 7 C 1.50701 * 109.46741 * 269.99549 * 6 5 4 8 8 H 1.08004 * 120.00400 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00123 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99953 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00365 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47082 * 89.99851 * 11 9 7 13 13 H 1.48496 * 109.47136 * 210.00102 * 11 9 7 14 14 H 1.48503 * 109.47224 * 330.00250 * 11 9 7 15 15 C 1.34776 * 119.99997 * 89.99882 * 5 4 2 16 16 O 1.21283 * 119.99966 * 180.02562 * 15 5 4 17 17 C 1.50704 * 120.00015 * 359.97438 * 15 5 4 18 18 C 1.50699 * 109.46850 * 180.02562 * 17 15 5 19 19 C 1.38247 * 119.92634 * 270.01861 * 18 17 15 20 20 C 1.38240 * 120.14459 * 179.75199 * 19 18 17 21 21 C 1.38552 * 120.02633 * 0.42901 * 20 19 18 22 22 C 1.39265 * 119.82706 * 359.57585 * 21 20 19 23 23 C 1.38231 * 119.92969 * 90.00273 * 18 17 15 24 24 O 1.36496 * 108.64230 * 180.24572 * 22 21 20 25 25 C 1.43981 * 105.48444 * 342.72036 * 24 22 21 26 26 O 1.36505 * 131.53353 * 179.87931 * 21 20 19 27 27 H 1.09003 * 109.47231 * 59.99789 * 1 2 3 28 28 H 1.09008 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47304 * 299.99310 * 1 2 3 30 30 H 1.08995 * 109.46916 * 240.00330 * 2 1 3 31 31 H 1.09004 * 109.47104 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.47399 * 300.00115 * 3 2 1 33 33 H 1.09004 * 109.47147 * 60.00234 * 3 2 1 34 34 H 1.09002 * 109.47352 * 305.00135 * 4 2 1 35 35 H 1.09006 * 109.47042 * 185.00041 * 4 2 1 36 36 H 1.08994 * 109.47065 * 29.99828 * 6 5 4 37 37 H 1.09001 * 109.46810 * 150.00044 * 6 5 4 38 38 H 0.96993 * 120.00361 * 180.02562 * 10 9 7 39 39 H 1.08993 * 109.46905 * 60.00211 * 17 15 5 40 40 H 1.08998 * 109.46686 * 300.00067 * 17 15 5 41 41 H 1.07994 * 119.93290 * 0.02562 * 19 18 17 42 42 H 1.07997 * 119.99327 * 180.33354 * 20 19 18 43 43 H 1.08003 * 119.98943 * 0.02562 * 23 18 17 44 44 H 1.09007 * 110.56955 * 268.54960 * 25 24 22 45 45 H 1.09003 * 110.57719 * 145.67764 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6525 -2.1329 1.1905 6 6 0.3745 -2.5660 1.7611 7 6 0.5716 -2.9410 3.2074 8 1 1.5508 -2.8640 3.6567 9 6 -0.4980 -3.3824 3.9571 10 7 -1.6902 -3.4766 3.4099 11 14 -0.2539 -3.8465 5.7499 12 1 -0.4675 -2.6508 6.6043 13 1 -1.2277 -4.9031 6.1247 14 1 1.1277 -4.3545 5.9461 15 6 2.4716 -3.0330 0.6115 16 8 2.1505 -4.2016 0.5624 17 6 3.7859 -2.5874 0.0239 18 6 4.5053 -3.7771 -0.5575 19 6 5.3704 -4.5128 0.2309 20 6 6.0288 -5.6081 -0.2964 21 6 5.8295 -5.9657 -1.6201 22 6 4.9581 -5.2245 -2.4142 23 6 4.2985 -4.1305 -1.8778 24 8 4.9305 -5.7750 -3.6629 25 6 6.1005 -6.6106 -3.7406 26 8 6.3480 -6.9807 -2.3713 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6054 -0.2618 2.1370 35 1 3.1264 -0.6443 1.2952 36 1 -0.3484 -1.7532 1.6917 37 1 0.0043 -3.4298 1.2090 38 1 -2.4428 -3.7868 3.9373 39 1 4.3989 -2.1375 0.8048 40 1 3.6026 -1.8544 -0.7617 41 1 5.5289 -4.2341 1.2621 42 1 6.6999 -6.1843 0.3232 43 1 3.6223 -3.5538 -2.4914 44 1 6.9443 -6.0514 -4.1448 45 1 5.9003 -7.4947 -4.3460 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751373860.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:10 Heat of formation + Delta-G solvation = -101.198457 kcal Electronic energy + Delta-G solvation = -27059.167865 eV Core-core repulsion = 23234.715278 eV Total energy + Delta-G solvation = -3824.452588 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.12172 -40.93960 -38.94911 -37.64366 -37.28307 -35.34279 -34.08056 -33.23198 -31.43187 -30.05876 -28.25407 -27.91803 -26.81167 -26.48697 -24.73399 -23.98056 -22.97073 -21.36256 -19.91333 -18.91655 -18.63433 -18.49277 -18.34116 -17.73101 -17.35350 -16.92286 -16.34550 -16.02618 -15.49185 -15.46737 -15.38743 -14.85577 -14.71363 -14.49928 -14.40259 -14.17597 -13.99517 -13.72523 -13.55158 -13.44854 -13.12649 -12.96086 -12.91032 -12.80723 -12.63888 -12.47175 -12.14047 -12.05523 -12.04026 -11.79114 -11.72677 -11.47131 -11.45986 -10.58966 -10.55712 -9.82270 -9.31309 -9.01146 -8.18405 -6.32604 0.10109 0.23887 1.36964 1.40157 1.50007 1.79372 1.92579 2.28749 2.42108 2.53990 2.72242 3.10999 3.49665 3.69332 3.81094 3.88012 4.01711 4.04195 4.08631 4.12275 4.24282 4.28615 4.31143 4.47005 4.61720 4.63786 4.73434 4.77789 4.88079 4.97825 5.01520 5.06967 5.10899 5.12071 5.19045 5.23985 5.29523 5.35724 5.41680 5.50203 5.52957 5.55959 5.65174 5.93844 6.13051 6.13276 6.75994 6.88897 7.33271 7.58082 8.87991 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011834 B = 0.003719 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.438346 B = 7527.446410 C = 9040.935602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.136 4.136 4 C 0.108 3.892 5 N -0.598 5.598 6 C 0.262 3.738 7 C -0.540 4.540 8 H 0.055 0.945 9 C 0.006 3.994 10 N -0.930 5.930 11 Si 0.964 3.036 12 H -0.263 1.263 13 H -0.285 1.285 14 H -0.271 1.271 15 C 0.497 3.503 16 O -0.594 6.594 17 C -0.086 4.086 18 C -0.057 4.057 19 C -0.099 4.099 20 C -0.102 4.102 21 C 0.011 3.989 22 C 0.013 3.987 23 C -0.099 4.099 24 O -0.328 6.328 25 C 0.204 3.796 26 O -0.325 6.325 27 H 0.064 0.936 28 H 0.027 0.973 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.107 0.893 36 H 0.034 0.966 37 H -0.013 1.013 38 H 0.265 0.735 39 H 0.136 0.864 40 H 0.130 0.870 41 H 0.155 0.845 42 H 0.155 0.845 43 H 0.138 0.862 44 H 0.109 0.891 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.068 6.541 -11.619 22.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.127 4.127 3 C -0.194 4.194 4 C -0.014 4.014 5 N -0.328 5.328 6 C 0.141 3.859 7 C -0.578 4.578 8 H 0.073 0.927 9 C -0.192 4.192 10 N -0.570 5.570 11 Si 0.789 3.211 12 H -0.188 1.188 13 H -0.210 1.210 14 H -0.196 1.196 15 C 0.286 3.714 16 O -0.475 6.475 17 C -0.125 4.125 18 C -0.058 4.058 19 C -0.117 4.117 20 C -0.121 4.121 21 C -0.033 4.033 22 C -0.031 4.031 23 C -0.117 4.117 24 O -0.245 6.245 25 C 0.094 3.906 26 O -0.242 6.242 27 H 0.083 0.917 28 H 0.046 0.954 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.125 0.875 36 H 0.052 0.948 37 H 0.005 0.995 38 H 0.074 0.926 39 H 0.153 0.847 40 H 0.148 0.852 41 H 0.172 0.828 42 H 0.173 0.827 43 H 0.156 0.844 44 H 0.127 0.873 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 17.665 5.721 -11.735 21.966 hybrid contribution -0.777 -0.906 0.695 1.381 sum 16.888 4.815 -11.040 20.743 Atomic orbital electron populations 1.21906 0.96660 1.00493 1.01535 1.21550 0.95329 0.97895 0.97927 1.21730 1.02024 0.93305 1.02324 1.21906 1.01478 0.79354 0.98665 1.48189 1.20056 1.08674 1.55927 1.18786 0.81335 0.94078 0.91739 1.21784 0.94953 1.44308 0.96791 0.92698 1.25836 0.94777 0.95319 1.03306 1.70059 1.00691 1.47941 1.38317 0.85466 0.77868 0.78325 0.79468 1.18814 1.21050 1.19613 1.21201 0.86714 0.85306 0.78166 1.90680 1.76471 1.20101 1.60290 1.20749 0.92061 0.96580 1.03104 1.19244 0.96642 0.97731 0.92143 1.21092 0.95871 0.94266 1.00465 1.20305 1.02410 0.98116 0.91233 1.20018 0.98583 0.89578 0.95169 1.19874 1.00722 0.97218 0.85303 1.20053 1.00790 0.95026 0.95860 1.87310 1.46366 1.60719 1.30100 1.26123 0.86438 0.95366 0.82700 1.87299 1.77626 1.40658 1.18606 0.91685 0.95373 0.93349 0.90752 0.90436 0.91756 0.92635 0.91281 0.87501 0.94850 0.99465 0.92627 0.84654 0.85219 0.82777 0.82738 0.84393 0.87326 0.82487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.40 8.18 71.98 0.59 -3.81 16 2 C -0.11 -2.54 3.12 -10.79 -0.03 -2.58 16 3 C -0.14 -2.22 9.19 71.98 0.66 -1.56 16 4 C 0.11 3.07 4.70 86.38 0.41 3.48 16 5 N -0.60 -24.20 2.28 -826.12 -1.88 -26.08 16 6 C 0.26 13.97 4.23 85.63 0.36 14.33 16 7 C -0.54 -30.96 9.39 25.60 0.24 -30.72 16 8 H 0.05 3.09 7.81 -2.91 -0.02 3.06 16 9 C 0.01 0.36 5.46 84.65 0.46 0.82 16 10 N -0.93 -56.84 13.29 21.45 0.28 -56.56 16 11 Si 0.96 45.13 29.54 68.60 2.03 47.15 16 12 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 13 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 14 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 15 C 0.50 19.79 7.67 87.66 0.67 20.46 16 16 O -0.59 -30.84 15.61 -3.04 -0.05 -30.89 16 17 C -0.09 -2.16 4.38 29.10 0.13 -2.04 16 18 C -0.06 -1.58 4.37 -19.86 -0.09 -1.67 16 19 C -0.10 -2.58 9.69 22.27 0.22 -2.37 16 20 C -0.10 -2.64 10.06 22.35 0.22 -2.41 16 21 C 0.01 0.30 7.15 22.59 0.16 0.47 16 22 C 0.01 0.38 7.15 22.59 0.16 0.55 16 23 C -0.10 -2.86 9.71 22.34 0.22 -2.65 16 24 O -0.33 -8.89 11.40 -76.01 -0.87 -9.76 16 25 C 0.20 3.79 8.89 113.37 1.01 4.80 16 26 O -0.33 -8.36 11.40 -76.10 -0.87 -9.23 16 27 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.03 1.04 5.89 -2.38 -0.01 1.03 16 29 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.07 1.66 7.30 -2.39 -0.02 1.65 16 31 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 34 H 0.07 2.16 8.07 -2.39 -0.02 2.14 16 35 H 0.11 2.16 6.44 -2.38 -0.02 2.14 16 36 H 0.03 1.80 5.98 -2.39 -0.01 1.79 16 37 H -0.01 -0.81 7.42 -2.39 -0.02 -0.83 16 38 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 39 H 0.14 2.50 7.34 -2.39 -0.02 2.48 16 40 H 0.13 2.45 7.20 -2.39 -0.02 2.43 16 41 H 0.15 3.37 8.06 -2.91 -0.02 3.34 16 42 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 43 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 44 H 0.11 1.37 8.14 -2.38 -0.02 1.35 16 45 H 0.16 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -80.89 371.13 5.02 -75.87 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 0.99 Total: 14.39 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: 5.39 Total: -4.90 kcal Atomic # 7 Polarization: -81.04 SS G_CDS: -1.60 Total: -82.64 kcal Atomic # 8 Polarization: -48.09 SS G_CDS: -1.78 Total: -49.87 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -80.89 5.02 -75.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751373860.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.326 kcal (2) G-P(sol) polarization free energy of solvation -80.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds