Wall clock time and date at job start Tue Mar 31 2020 13:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34701 * 116.99711 * 2 1 4 4 O 1.21472 * 120.00579 * 0.02562 * 3 2 1 5 5 C 1.47747 * 119.99643 * 180.02562 * 3 2 1 6 6 C 1.39749 * 120.08107 * 359.97438 * 5 3 2 7 7 C 1.38040 * 120.14182 * 180.02562 * 6 5 3 8 8 C 1.38104 * 120.30249 * 359.74760 * 7 6 5 9 9 C 1.39673 * 120.15319 * 0.50757 * 8 7 6 10 10 C 1.47866 * 120.07103 * 179.76787 * 9 8 7 11 11 O 1.21550 * 120.00209 * 209.87477 * 10 9 8 12 12 N 1.34783 * 119.99858 * 29.87749 * 10 9 8 13 13 C 1.46497 * 119.99701 * 353.50851 * 12 10 9 14 14 C 1.50702 * 109.46980 * 260.92181 * 13 12 10 15 15 H 1.08008 * 119.99978 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00423 * 180.02562 * 14 13 12 17 17 N 1.31521 * 119.99650 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00591 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46730 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47411 * 119.99447 * 18 16 14 21 21 H 1.48502 * 109.47355 * 240.00055 * 18 16 14 22 22 C 1.46499 * 119.99772 * 173.50596 * 12 10 9 23 23 C 1.52996 * 109.47301 * 264.15663 * 22 12 10 24 24 C 1.53000 * 109.47078 * 65.47496 * 23 22 12 25 25 C 1.52997 * 109.47199 * 185.47827 * 23 22 12 26 26 C 1.39315 * 119.85837 * 359.49216 * 9 8 7 27 27 H 1.08996 * 109.47456 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47004 * 299.99918 * 1 2 3 29 29 H 1.09000 * 109.47208 * 59.99899 * 1 2 3 30 30 H 1.08007 * 119.92989 * 0.04132 * 6 5 3 31 31 H 1.08000 * 119.84850 * 180.02562 * 7 6 5 32 32 H 1.08005 * 119.92746 * 180.25426 * 8 7 6 33 33 H 1.08994 * 109.47875 * 20.92354 * 13 12 10 34 34 H 1.09001 * 109.46966 * 140.92459 * 13 12 10 35 35 H 0.97002 * 120.00030 * 180.02562 * 17 16 14 36 36 H 1.09005 * 109.47111 * 24.15646 * 22 12 10 37 37 H 1.09000 * 109.46821 * 144.15190 * 22 12 10 38 38 H 1.08997 * 109.46868 * 305.47403 * 23 22 12 39 39 H 1.09001 * 109.47047 * 63.60709 * 24 23 22 40 40 H 1.09002 * 109.46699 * 183.60789 * 24 23 22 41 41 H 1.08994 * 109.47453 * 303.60267 * 24 23 22 42 42 H 1.08995 * 109.47450 * 59.99725 * 25 23 22 43 43 H 1.08994 * 109.47180 * 179.97438 * 25 23 22 44 44 H 1.09004 * 109.46767 * 299.99936 * 25 23 22 45 45 H 1.08006 * 120.15222 * 180.22973 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2002 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5389 1.2775 -0.0006 6 6 4.3017 0.1066 -0.0006 7 6 5.6803 0.1773 -0.0006 8 6 6.3151 1.4038 -0.0058 9 6 5.5650 2.5821 -0.0005 10 6 6.2466 3.8943 -0.0009 11 8 5.7189 4.8534 0.5274 12 7 7.4529 4.0269 -0.5873 13 6 8.1528 2.8456 -1.0980 14 6 9.1865 2.4016 -0.0952 15 1 9.3095 2.9448 0.8302 16 6 9.9753 1.3020 -0.3591 17 7 9.8259 0.6408 -1.4862 18 14 11.2570 0.7520 0.8835 19 1 11.2269 1.6581 2.0597 20 1 10.9601 -0.6361 1.3197 21 1 12.6035 0.7972 0.2588 22 6 8.0641 5.3522 -0.7138 23 6 7.7553 5.9262 -2.0980 24 6 6.2504 6.1720 -2.2240 25 6 8.5050 7.2473 -2.2812 26 6 4.1733 2.5183 -0.0005 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 3.8115 -0.8559 -0.0008 31 1 6.2651 -0.7306 -0.0010 32 1 7.3940 1.4521 -0.0099 33 1 7.4361 2.0409 -1.2615 34 1 8.6429 3.0925 -2.0398 35 1 10.3806 -0.1331 -1.6717 36 1 7.6594 6.0136 0.0523 37 1 9.1435 5.2681 -0.5879 38 1 8.0733 5.2188 -2.8638 39 1 5.9438 6.9272 -1.5003 40 1 6.0223 6.5204 -3.2314 41 1 5.7131 5.2437 -2.0303 42 1 9.5770 7.0722 -2.1914 43 1 8.2853 7.6559 -3.2675 44 1 8.1870 7.9547 -1.5153 45 1 3.5886 3.4264 -0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751380895.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:51 Heat of formation + Delta-G solvation = -83.046543 kcal Electronic energy + Delta-G solvation = -27344.815580 eV Core-core repulsion = 23521.150118 eV Total energy + Delta-G solvation = -3823.665461 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.53387 -39.78338 -37.86942 -36.35347 -35.97570 -34.49834 -32.50242 -31.28114 -30.75265 -28.04857 -27.55025 -26.81225 -25.96505 -23.94381 -23.27020 -22.50948 -20.89233 -19.99553 -19.03299 -17.53219 -17.05303 -16.71766 -16.33405 -16.29738 -15.60600 -15.51779 -14.81236 -14.56126 -14.35992 -13.99334 -13.85044 -13.49398 -13.46796 -13.27396 -12.93622 -12.53334 -12.36232 -12.21389 -12.19560 -12.01696 -11.88331 -11.43571 -11.28303 -11.07940 -11.01611 -10.85161 -10.84057 -10.60210 -10.53208 -10.40611 -10.16077 -9.95996 -9.82560 -9.17797 -8.87464 -8.71486 -8.40354 -7.77028 -6.38375 -4.48656 0.93216 1.39753 2.65653 2.68126 3.11355 3.21485 3.25633 3.44222 3.82007 4.14950 4.25548 4.79391 4.92106 4.99467 5.06048 5.07340 5.19317 5.25428 5.30885 5.37955 5.40008 5.48661 5.66104 5.75057 5.88045 5.96383 6.02337 6.09291 6.16689 6.21072 6.27540 6.34555 6.35406 6.40422 6.46308 6.59399 6.66650 6.74912 6.78705 6.85225 7.06899 7.19778 7.43066 7.57766 7.79492 7.82419 8.23926 8.61955 8.90554 9.20558 10.65610 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.010160 B = 0.004706 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2755.153498 B = 5948.652952 C = 8185.949097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.514 3.486 4 O -0.511 6.511 5 C -0.159 4.159 6 C -0.046 4.046 7 C -0.147 4.147 8 C -0.056 4.056 9 C -0.146 4.146 10 C 0.559 3.441 11 O -0.563 6.563 12 N -0.585 5.585 13 C 0.206 3.794 14 C -0.546 4.546 15 H 0.067 0.933 16 C 0.069 3.931 17 N -0.880 5.880 18 Si 0.896 3.104 19 H -0.270 1.270 20 H -0.279 1.279 21 H -0.281 1.281 22 C 0.123 3.877 23 C -0.113 4.113 24 C -0.138 4.138 25 C -0.141 4.141 26 C -0.003 4.003 27 H 0.100 0.900 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.134 0.866 31 H 0.135 0.865 32 H 0.208 0.792 33 H 0.066 0.934 34 H 0.036 0.964 35 H 0.269 0.731 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.054 0.946 40 H 0.044 0.956 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.051 0.949 44 H 0.053 0.947 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.843 -0.891 -0.712 8.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.360 3.640 4 O -0.400 6.400 5 C -0.161 4.161 6 C -0.064 4.064 7 C -0.165 4.165 8 C -0.073 4.073 9 C -0.149 4.149 10 C 0.348 3.652 11 O -0.444 6.444 12 N -0.314 5.314 13 C 0.087 3.913 14 C -0.584 4.584 15 H 0.086 0.914 16 C -0.136 4.136 17 N -0.516 5.516 18 Si 0.723 3.277 19 H -0.194 1.194 20 H -0.205 1.205 21 H -0.206 1.206 22 C 0.000 4.000 23 C -0.132 4.132 24 C -0.195 4.195 25 C -0.199 4.199 26 C -0.022 4.022 27 H 0.119 0.881 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.152 0.848 31 H 0.153 0.847 32 H 0.224 0.776 33 H 0.083 0.917 34 H 0.054 0.946 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.245 -0.256 -0.566 9.265 hybrid contribution 0.561 -0.506 0.458 0.884 sum -8.683 -0.762 -0.108 8.717 Atomic orbital electron populations 1.23241 0.76364 1.03512 1.02555 1.86545 1.23249 1.32916 1.84609 1.21254 0.89168 0.81219 0.72353 1.90823 1.66827 1.35998 1.46336 1.18793 0.88486 0.94881 1.13895 1.21589 0.94304 0.97359 0.93189 1.21250 0.93657 0.98838 1.02745 1.23828 1.06342 0.90662 0.86459 1.19932 0.93132 0.94581 1.07294 1.18097 0.81355 0.87302 0.78479 1.90689 1.66609 1.40543 1.46591 1.48005 1.17488 1.09173 1.56754 1.20327 0.92749 0.82918 0.95334 1.21527 1.18845 1.13146 1.04894 0.91434 1.25004 0.96931 0.96081 0.95572 1.69943 1.39491 1.19213 1.22993 0.86443 0.81137 0.78789 0.81297 1.19415 1.20511 1.20644 1.21402 0.98458 0.83993 0.96164 1.21491 0.95970 0.97140 0.98610 1.21751 0.95586 1.01806 1.00353 1.21740 1.00121 0.96824 1.01191 1.21201 0.93316 0.96763 0.90959 0.88136 0.91930 0.91933 0.84837 0.84712 0.77561 0.91703 0.94640 0.92117 0.90494 0.90299 0.90937 0.92710 0.93686 0.92919 0.92591 0.92945 0.92817 0.84280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.66 9.81 -40.49 -0.40 -5.06 16 3 C 0.51 8.15 7.90 34.62 0.27 8.42 16 4 O -0.51 -9.20 16.13 -19.24 -0.31 -9.51 16 5 C -0.16 -2.62 5.87 -105.03 -0.62 -3.24 16 6 C -0.05 -0.68 9.61 -39.09 -0.38 -1.05 16 7 C -0.15 -2.38 10.02 -39.70 -0.40 -2.78 16 8 C -0.06 -1.07 7.48 -39.10 -0.29 -1.36 16 9 C -0.15 -2.88 5.58 -105.02 -0.59 -3.47 16 10 C 0.56 11.84 5.91 -12.32 -0.07 11.76 16 11 O -0.56 -12.81 15.62 5.32 0.08 -12.73 16 12 N -0.59 -12.01 2.26 -176.17 -0.40 -12.40 16 13 C 0.21 4.55 4.67 -5.19 -0.02 4.53 16 14 C -0.55 -12.96 7.54 -34.44 -0.26 -13.22 16 15 H 0.07 1.66 7.81 -52.48 -0.41 1.25 16 16 C 0.07 1.66 5.35 -17.82 -0.10 1.56 16 17 N -0.88 -21.83 13.29 55.43 0.74 -21.10 16 18 Si 0.90 18.95 29.54 -169.99 -5.02 13.93 16 19 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 20 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 21 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 22 C 0.12 2.24 4.97 -4.04 -0.02 2.22 16 23 C -0.11 -1.79 3.12 -90.62 -0.28 -2.07 16 24 C -0.14 -2.21 8.57 37.16 0.32 -1.89 16 25 C -0.14 -1.83 9.19 37.16 0.34 -1.49 16 26 C 0.00 -0.06 9.14 -38.77 -0.35 -0.41 16 27 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.13 1.60 7.60 -52.48 -0.40 1.21 16 31 H 0.14 1.95 8.06 -52.49 -0.42 1.53 16 32 H 0.21 4.44 3.09 -52.48 -0.16 4.27 16 33 H 0.07 1.46 3.97 -52.34 -0.21 1.25 16 34 H 0.04 0.83 7.95 -51.93 -0.41 0.42 16 35 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 36 H 0.08 1.43 7.19 -51.93 -0.37 1.06 16 37 H 0.08 1.43 8.11 -51.93 -0.42 1.01 16 38 H 0.07 1.21 7.95 -51.93 -0.41 0.80 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.05 0.96 6.35 -51.93 -0.33 0.63 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.14 2.63 7.51 -52.48 -0.39 2.23 16 LS Contribution 372.47 15.07 5.61 5.61 Total: -1.00 -27.60 372.47 -7.53 -35.14 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -6.46 Total: 7.18 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -1.38 Total: -1.06 kcal Atomic # 7 Polarization: -33.84 SS G_CDS: 0.34 Total: -33.50 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -0.62 Total: -27.30 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.02 Total: 13.93 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -27.60 -7.53 -35.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751380895.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.911 kcal (2) G-P(sol) polarization free energy of solvation -27.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds