Wall clock time and date at job start Tue Mar 31 2020 13:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34701 * 116.99711 * 2 1 4 4 O 1.21472 * 120.00579 * 0.02562 * 3 2 1 5 5 C 1.47747 * 119.99643 * 180.02562 * 3 2 1 6 6 C 1.39749 * 120.08107 * 359.97438 * 5 3 2 7 7 C 1.38040 * 120.14182 * 180.02562 * 6 5 3 8 8 C 1.38104 * 120.30249 * 359.74760 * 7 6 5 9 9 C 1.39673 * 120.15319 * 0.50757 * 8 7 6 10 10 C 1.47866 * 120.07103 * 179.76787 * 9 8 7 11 11 O 1.21550 * 120.00209 * 209.87477 * 10 9 8 12 12 N 1.34783 * 119.99858 * 29.87749 * 10 9 8 13 13 C 1.46497 * 119.99701 * 353.50851 * 12 10 9 14 14 C 1.50702 * 109.46980 * 260.92181 * 13 12 10 15 15 H 1.08008 * 119.99978 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00423 * 180.02562 * 14 13 12 17 17 N 1.31521 * 119.99650 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00591 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46730 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47411 * 119.99447 * 18 16 14 21 21 H 1.48502 * 109.47355 * 240.00055 * 18 16 14 22 22 C 1.46499 * 119.99772 * 173.50596 * 12 10 9 23 23 C 1.52996 * 109.47301 * 264.15663 * 22 12 10 24 24 C 1.53000 * 109.47078 * 65.47496 * 23 22 12 25 25 C 1.52997 * 109.47199 * 185.47827 * 23 22 12 26 26 C 1.39315 * 119.85837 * 359.49216 * 9 8 7 27 27 H 1.08996 * 109.47456 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47004 * 299.99918 * 1 2 3 29 29 H 1.09000 * 109.47208 * 59.99899 * 1 2 3 30 30 H 1.08007 * 119.92989 * 0.04132 * 6 5 3 31 31 H 1.08000 * 119.84850 * 180.02562 * 7 6 5 32 32 H 1.08005 * 119.92746 * 180.25426 * 8 7 6 33 33 H 1.08994 * 109.47875 * 20.92354 * 13 12 10 34 34 H 1.09001 * 109.46966 * 140.92459 * 13 12 10 35 35 H 0.97002 * 120.00030 * 180.02562 * 17 16 14 36 36 H 1.09005 * 109.47111 * 24.15646 * 22 12 10 37 37 H 1.09000 * 109.46821 * 144.15190 * 22 12 10 38 38 H 1.08997 * 109.46868 * 305.47403 * 23 22 12 39 39 H 1.09001 * 109.47047 * 63.60709 * 24 23 22 40 40 H 1.09002 * 109.46699 * 183.60789 * 24 23 22 41 41 H 1.08994 * 109.47453 * 303.60267 * 24 23 22 42 42 H 1.08995 * 109.47450 * 59.99725 * 25 23 22 43 43 H 1.08994 * 109.47180 * 179.97438 * 25 23 22 44 44 H 1.09004 * 109.46767 * 299.99936 * 25 23 22 45 45 H 1.08006 * 120.15222 * 180.22973 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2002 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5389 1.2775 -0.0006 6 6 4.3017 0.1066 -0.0006 7 6 5.6803 0.1773 -0.0006 8 6 6.3151 1.4038 -0.0058 9 6 5.5650 2.5821 -0.0005 10 6 6.2466 3.8943 -0.0009 11 8 5.7189 4.8534 0.5274 12 7 7.4529 4.0269 -0.5873 13 6 8.1528 2.8456 -1.0980 14 6 9.1865 2.4016 -0.0952 15 1 9.3095 2.9448 0.8302 16 6 9.9753 1.3020 -0.3591 17 7 9.8259 0.6408 -1.4862 18 14 11.2570 0.7520 0.8835 19 1 11.2269 1.6581 2.0597 20 1 10.9601 -0.6361 1.3197 21 1 12.6035 0.7972 0.2588 22 6 8.0641 5.3522 -0.7138 23 6 7.7553 5.9262 -2.0980 24 6 6.2504 6.1720 -2.2240 25 6 8.5050 7.2473 -2.2812 26 6 4.1733 2.5183 -0.0005 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 3.8115 -0.8559 -0.0008 31 1 6.2651 -0.7306 -0.0010 32 1 7.3940 1.4521 -0.0099 33 1 7.4361 2.0409 -1.2615 34 1 8.6429 3.0925 -2.0398 35 1 10.3806 -0.1331 -1.6717 36 1 7.6594 6.0136 0.0523 37 1 9.1435 5.2681 -0.5879 38 1 8.0733 5.2188 -2.8638 39 1 5.9438 6.9272 -1.5003 40 1 6.0223 6.5204 -3.2314 41 1 5.7131 5.2437 -2.0303 42 1 9.5770 7.0722 -2.1914 43 1 8.2853 7.6559 -3.2675 44 1 8.1870 7.9547 -1.5153 45 1 3.5886 3.4264 -0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751380895.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:50 Heat of formation + Delta-G solvation = -95.763117 kcal Electronic energy + Delta-G solvation = -27345.367012 eV Core-core repulsion = 23521.150118 eV Total energy + Delta-G solvation = -3824.216893 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.86028 -41.22810 -39.26602 -37.57574 -37.50807 -36.04712 -34.26359 -32.65528 -32.14217 -29.57990 -28.68922 -28.06738 -27.37761 -25.41029 -24.83161 -23.96689 -22.19103 -21.33246 -20.49776 -18.96435 -18.54923 -18.24712 -17.81233 -17.42021 -17.14000 -16.92818 -16.43277 -16.18700 -15.71567 -15.35887 -15.19965 -14.71533 -14.67263 -14.55277 -14.40079 -14.22937 -13.87452 -13.63270 -13.39941 -13.13071 -13.05436 -12.89150 -12.74559 -12.70177 -12.48093 -12.29327 -12.15075 -11.87773 -11.84398 -11.83797 -11.62037 -11.55897 -11.48244 -10.83933 -10.63535 -10.10118 -9.91577 -9.44539 -8.22496 -6.38677 -0.41601 -0.01904 1.33934 1.43117 1.48789 1.56932 1.57797 1.90487 2.24949 2.43419 2.78302 3.06101 3.55078 3.65718 3.83919 3.92699 4.02877 4.12027 4.16165 4.22956 4.32339 4.34776 4.39922 4.58129 4.65645 4.69355 4.76635 4.80145 4.84440 4.86794 4.89780 4.98920 5.03857 5.11308 5.18950 5.19738 5.22726 5.38416 5.38953 5.42365 5.45455 5.65380 5.77492 5.82858 5.99246 6.52011 6.60621 6.77065 7.21523 7.35342 8.81402 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.010160 B = 0.004706 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2755.153498 B = 5948.652952 C = 8185.949097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.350 6.350 3 C 0.519 3.481 4 O -0.538 6.538 5 C -0.158 4.158 6 C -0.022 4.022 7 C -0.141 4.141 8 C -0.072 4.072 9 C -0.164 4.164 10 C 0.554 3.446 11 O -0.587 6.587 12 N -0.586 5.586 13 C 0.220 3.780 14 C -0.552 4.552 15 H 0.053 0.947 16 C 0.038 3.962 17 N -0.902 5.902 18 Si 0.951 3.049 19 H -0.276 1.276 20 H -0.271 1.271 21 H -0.280 1.280 22 C 0.119 3.881 23 C -0.107 4.107 24 C -0.131 4.131 25 C -0.134 4.134 26 C -0.012 4.012 27 H 0.140 0.860 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.173 0.827 31 H 0.157 0.843 32 H 0.186 0.814 33 H 0.066 0.934 34 H 0.017 0.983 35 H 0.273 0.727 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.051 0.949 40 H 0.067 0.933 41 H 0.024 0.976 42 H 0.061 0.939 43 H 0.070 0.930 44 H 0.059 0.941 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.513 -2.553 -0.802 9.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.266 6.266 3 C 0.366 3.634 4 O -0.429 6.429 5 C -0.160 4.160 6 C -0.040 4.040 7 C -0.158 4.158 8 C -0.089 4.089 9 C -0.167 4.167 10 C 0.343 3.657 11 O -0.471 6.471 12 N -0.315 5.315 13 C 0.100 3.900 14 C -0.590 4.590 15 H 0.071 0.929 16 C -0.165 4.165 17 N -0.540 5.540 18 Si 0.776 3.224 19 H -0.200 1.200 20 H -0.196 1.196 21 H -0.205 1.205 22 C -0.004 4.004 23 C -0.127 4.127 24 C -0.189 4.189 25 C -0.192 4.192 26 C -0.031 4.031 27 H 0.158 0.842 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.191 0.809 31 H 0.175 0.825 32 H 0.202 0.798 33 H 0.083 0.917 34 H 0.035 0.965 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.086 0.914 41 H 0.043 0.957 42 H 0.080 0.920 43 H 0.089 0.911 44 H 0.078 0.922 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.912 -1.931 -0.664 10.120 hybrid contribution 0.648 -0.047 0.490 0.814 sum -9.264 -1.978 -0.174 9.475 Atomic orbital electron populations 1.23641 0.74018 1.06146 1.02664 1.86522 1.25414 1.30895 1.83784 1.21094 0.88794 0.81712 0.71782 1.90817 1.67309 1.37176 1.47648 1.18941 0.89405 0.94641 1.12984 1.21914 0.93486 0.98255 0.90395 1.21472 0.94535 0.98289 1.01530 1.23578 1.05294 0.91784 0.88270 1.19849 0.93700 0.94011 1.09112 1.18418 0.81369 0.87849 0.78019 1.90652 1.67142 1.41524 1.47764 1.48044 1.17418 1.09613 1.56379 1.20084 0.92397 0.83387 0.94115 1.21540 1.19542 1.13350 1.04572 0.92868 1.25524 0.98189 0.95945 0.96828 1.70002 1.40262 1.19622 1.24080 0.85614 0.79070 0.78500 0.79201 1.20039 1.19608 1.20547 1.21553 0.98063 0.83092 0.97667 1.21441 0.96290 0.98450 0.96473 1.21689 0.95309 1.00313 1.01555 1.21694 0.99962 0.95021 1.02498 1.21108 0.92707 0.97429 0.91852 0.84225 0.91889 0.91883 0.80920 0.82523 0.79775 0.91677 0.96516 0.91793 0.91137 0.90557 0.91953 0.93031 0.91425 0.95660 0.92026 0.91097 0.92163 0.85642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.64 16 2 O -0.35 -8.11 9.81 -56.11 -0.55 -8.66 16 3 C 0.52 15.68 7.90 70.34 0.56 16.23 16 4 O -0.54 -19.13 16.13 19.93 0.32 -18.81 16 5 C -0.16 -5.02 5.87 -20.13 -0.12 -5.14 16 6 C -0.02 -0.60 9.61 22.59 0.22 -0.38 16 7 C -0.14 -4.31 10.02 22.19 0.22 -4.08 16 8 C -0.07 -2.77 7.48 22.58 0.17 -2.60 16 9 C -0.16 -6.65 5.58 -20.12 -0.11 -6.76 16 10 C 0.55 24.55 5.91 86.79 0.51 25.07 16 11 O -0.59 -28.03 15.62 -3.87 -0.06 -28.09 16 12 N -0.59 -25.15 2.26 -829.55 -1.88 -27.03 16 13 C 0.22 10.09 4.67 85.63 0.40 10.49 16 14 C -0.55 -26.82 7.54 25.60 0.19 -26.62 16 15 H 0.05 2.69 7.81 -2.91 -0.02 2.67 16 16 C 0.04 1.83 5.35 84.65 0.45 2.29 16 17 N -0.90 -44.77 13.29 21.45 0.28 -44.48 16 18 Si 0.95 38.69 29.54 68.60 2.03 40.71 16 19 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 20 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 21 H -0.28 -11.30 7.11 99.48 0.71 -10.60 16 22 C 0.12 4.49 4.97 86.38 0.43 4.92 16 23 C -0.11 -3.44 3.12 -10.80 -0.03 -3.47 16 24 C -0.13 -4.27 8.57 71.98 0.62 -3.66 16 25 C -0.13 -3.33 9.19 71.98 0.66 -2.67 16 26 C -0.01 -0.44 9.14 22.80 0.21 -0.23 16 27 H 0.14 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.17 3.32 7.60 -2.91 -0.02 3.29 16 31 H 0.16 4.11 8.06 -2.91 -0.02 4.09 16 32 H 0.19 8.09 3.09 -2.91 -0.01 8.08 16 33 H 0.07 3.04 3.97 -2.78 -0.01 3.03 16 34 H 0.02 0.82 7.95 -2.39 -0.02 0.80 16 35 H 0.27 12.76 8.31 -92.71 -0.77 11.99 16 36 H 0.07 2.74 7.19 -2.38 -0.02 2.72 16 37 H 0.08 2.87 8.11 -2.39 -0.02 2.85 16 38 H 0.06 2.13 7.95 -2.39 -0.02 2.11 16 39 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.02 0.94 6.35 -2.39 -0.02 0.92 16 42 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 45 H 0.13 4.99 7.51 -2.91 -0.02 4.96 16 Total: -1.00 -60.75 372.47 6.71 -54.04 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: 1.00 Total: 27.29 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 5.57 Total: 5.03 kcal Atomic # 7 Polarization: -69.92 SS G_CDS: -1.59 Total: -71.51 kcal Atomic # 8 Polarization: -55.26 SS G_CDS: -0.29 Total: -55.55 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 2.03 Total: 40.71 kcal Total: -60.75 6.71 -54.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751380895.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.727 kcal (2) G-P(sol) polarization free energy of solvation -60.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds