Wall clock time and date at job start Tue Mar 31 2020 13:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50701 * 119.99770 * 2 1 4 4 C 1.52997 * 109.47194 * 124.99977 * 3 2 1 5 5 H 1.09003 * 109.46804 * 304.99973 * 4 3 2 6 6 C 1.53003 * 109.47170 * 64.99772 * 4 3 2 7 7 O 1.42899 * 109.47106 * 185.00423 * 6 4 3 8 8 C 1.53002 * 109.47066 * 184.99927 * 4 3 2 9 9 N 1.46503 * 109.46556 * 175.00037 * 8 4 3 10 10 C 1.34783 * 119.99585 * 179.97438 * 9 8 4 11 11 O 1.21284 * 119.99976 * 0.02562 * 10 9 8 12 12 C 1.50699 * 120.00059 * 179.97438 * 10 9 8 13 13 C 1.50699 * 109.47151 * 180.02562 * 12 10 9 14 14 C 1.38328 * 119.96224 * 270.02423 * 13 12 10 15 15 C 1.38281 * 120.13505 * 179.97438 * 14 13 12 16 16 C 1.38120 * 120.06679 * 359.68445 * 15 14 13 17 17 C 1.38852 * 119.93490 * 0.58817 * 16 15 14 18 18 O 1.35752 * 120.07221 * 179.70368 * 17 16 15 19 19 C 1.34829 * 116.99954 * 354.17311 * 18 17 16 20 20 H 1.07998 * 119.99999 * 5.03596 * 19 18 17 21 21 C 1.38656 * 119.99670 * 185.03445 * 19 18 17 22 22 N 1.31550 * 120.00275 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99668 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46814 * 90.00164 * 23 21 19 25 25 H 1.48501 * 109.47378 * 210.00272 * 23 21 19 26 26 H 1.48503 * 109.47143 * 330.00397 * 23 21 19 27 27 C 1.38073 * 119.96539 * 89.99818 * 13 12 10 28 28 H 1.07997 * 120.00192 * 0.02562 * 1 2 3 29 29 H 1.08003 * 119.99755 * 180.02562 * 1 2 3 30 30 H 1.07998 * 119.99669 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.46868 * 5.00091 * 3 2 1 32 32 H 1.09003 * 109.46946 * 244.99910 * 3 2 1 33 33 H 1.09001 * 109.46691 * 305.00095 * 6 4 3 34 34 H 1.09002 * 109.46905 * 65.00000 * 6 4 3 35 35 H 0.96697 * 113.99789 * 180.02562 * 7 6 4 36 36 H 1.08997 * 109.46933 * 54.99965 * 8 4 3 37 37 H 1.08997 * 109.46850 * 294.99787 * 8 4 3 38 38 H 0.97001 * 120.00603 * 0.02562 * 9 8 4 39 39 H 1.09004 * 109.46756 * 60.00007 * 12 10 9 40 40 H 1.08998 * 109.46908 * 300.00650 * 12 10 9 41 41 H 1.08001 * 119.93314 * 359.97438 * 14 13 12 42 42 H 1.07993 * 119.96315 * 179.97438 * 15 14 13 43 43 H 1.08001 * 120.03256 * 180.31909 * 16 15 14 44 44 H 0.96999 * 119.99936 * 179.97438 * 22 21 19 45 45 H 1.07996 * 120.03547 * 0.04988 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3332 1.1816 5 1 2.4883 1.1470 2.1060 6 6 4.0999 0.2510 0.9921 7 8 4.9373 0.1990 2.1489 8 6 3.7091 2.7047 1.2552 9 7 4.5484 2.7726 2.4541 10 6 5.2439 3.8943 2.7271 11 8 5.1746 4.8476 1.9806 12 6 6.1068 3.9644 3.9607 13 6 6.7708 5.3153 4.0331 14 6 8.0048 5.5112 3.4395 15 6 8.6171 6.7494 3.5033 16 6 7.9949 7.7964 4.1548 17 6 6.7588 7.6014 4.7565 18 8 6.1474 8.6268 5.4027 19 6 6.8451 9.7737 5.5287 20 1 7.8103 9.8735 5.0544 21 6 6.3234 10.8249 6.2671 22 7 5.1480 10.7032 6.8451 23 14 7.2903 12.4136 6.4422 24 1 6.9293 13.3372 5.3369 25 1 6.9662 13.0494 7.7445 26 1 8.7443 12.1170 6.3845 27 6 6.1466 6.3562 4.6914 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9354 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3585 2.1316 0.0896 32 1 2.6213 1.4026 -0.9314 33 1 3.6151 -0.7150 0.8509 34 1 4.7046 0.4857 0.1160 35 1 5.6371 -0.4664 2.0982 36 1 2.9467 3.4823 1.3008 37 1 4.3274 2.8536 0.3699 38 1 4.6041 2.0100 3.0510 39 1 6.8689 3.1864 3.9156 40 1 5.4881 3.8161 4.8457 41 1 8.4910 4.6954 2.9252 42 1 9.5807 6.8992 3.0393 43 1 8.4712 8.7646 4.1998 44 1 4.7832 11.4385 7.3620 45 1 5.1834 6.2024 5.1549 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775564206.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:22 Heat of formation + Delta-G solvation = -80.147167 kcal Electronic energy + Delta-G solvation = -25622.803242 eV Core-core repulsion = 21799.263507 eV Total energy + Delta-G solvation = -3823.539735 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.79508 -38.85210 -38.12474 -36.36100 -35.91626 -34.35804 -32.35622 -32.06553 -31.46764 -29.10501 -27.47960 -26.22950 -25.61219 -24.99926 -21.61603 -21.28991 -21.00659 -20.21019 -19.67943 -17.84409 -17.57530 -16.99673 -16.68136 -16.28634 -15.70994 -15.36958 -15.11463 -14.85474 -14.58810 -14.29972 -14.18501 -13.64135 -13.56476 -13.39566 -13.24701 -13.05044 -12.90506 -12.42818 -12.33059 -12.11214 -11.95100 -11.70877 -11.40780 -11.25908 -11.18048 -11.02215 -10.73015 -10.67847 -10.50903 -10.37468 -10.32918 -9.81861 -9.51348 -9.23297 -8.86305 -8.74666 -7.93798 -7.10320 -6.35160 -3.93897 1.83995 2.22741 2.51139 2.98186 3.18813 3.19356 3.24373 3.35855 3.80324 4.04660 4.28030 4.42212 4.68143 4.72038 4.79264 4.82887 5.05054 5.07757 5.11319 5.20696 5.22331 5.28331 5.35571 5.42901 5.47445 5.58676 5.64830 5.74125 5.80250 5.87096 5.89393 6.05266 6.18970 6.29379 6.32515 6.45757 6.64093 6.78222 7.03902 7.17832 7.19358 7.39668 7.48062 7.54977 7.79205 7.95648 8.10334 8.56033 9.10707 9.83004 10.83347 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.021845 B = 0.002196 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.468983 B =12748.889890 C =13572.299638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.158 4.158 3 C -0.086 4.086 4 C -0.096 4.096 5 H 0.087 0.913 6 C 0.081 3.919 7 O -0.573 6.573 8 C 0.128 3.872 9 N -0.727 5.727 10 C 0.511 3.489 11 O -0.528 6.528 12 C -0.093 4.093 13 C -0.030 4.030 14 C -0.196 4.196 15 C -0.076 4.076 16 C -0.232 4.232 17 C 0.154 3.846 18 O -0.181 6.181 19 C -0.389 4.389 20 H 0.091 0.909 21 C 0.037 3.963 22 N -0.865 5.865 23 Si 0.940 3.060 24 H -0.274 1.274 25 H -0.278 1.278 26 H -0.268 1.268 27 C -0.175 4.175 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.382 0.618 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.408 0.592 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.106 0.894 43 H 0.126 0.874 44 H 0.268 0.732 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.121 -24.417 -11.358 27.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.176 4.176 3 C -0.124 4.124 4 C -0.115 4.115 5 H 0.105 0.895 6 C 0.003 3.997 7 O -0.379 6.379 8 C 0.004 3.996 9 N -0.384 5.384 10 C 0.297 3.703 11 O -0.403 6.403 12 C -0.133 4.133 13 C -0.031 4.031 14 C -0.215 4.215 15 C -0.094 4.094 16 C -0.251 4.251 17 C 0.101 3.899 18 O -0.085 6.085 19 C -0.466 4.466 20 H 0.108 0.892 21 C -0.166 4.166 22 N -0.501 5.501 23 Si 0.765 3.235 24 H -0.200 1.200 25 H -0.203 1.203 26 H -0.193 1.193 27 C -0.194 4.194 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.126 0.874 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.230 0.770 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.246 0.754 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.120 0.880 42 H 0.125 0.875 43 H 0.143 0.857 44 H 0.078 0.922 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.949 -23.068 -11.453 26.056 hybrid contribution 0.851 -0.085 0.030 0.856 sum -3.098 -23.153 -11.423 26.003 Atomic orbital electron populations 1.23917 0.95981 1.02064 1.00661 1.22932 0.96057 0.98236 1.00342 1.20677 0.97735 0.96175 0.97801 1.21403 0.95557 0.94346 1.00211 0.89487 1.22293 0.91658 0.97888 0.87853 1.86277 1.47646 1.62543 1.41433 1.21236 0.93969 0.95631 0.88805 1.46087 1.48096 1.17226 1.26964 1.20729 0.80021 0.82172 0.87353 1.90743 1.63563 1.36171 1.49836 1.20563 0.98903 0.97209 0.96597 1.18692 0.94251 0.92739 0.97422 1.20348 0.96993 0.97469 1.06704 1.20669 0.98355 0.92805 0.97575 1.21157 0.97832 1.00146 1.05951 1.19281 0.90906 0.88553 0.91129 1.83977 1.40186 1.19117 1.65184 1.21312 1.03006 0.89136 1.33123 0.89166 1.25269 0.96521 0.99073 0.95769 1.70043 1.16345 1.32482 1.31229 0.85724 0.79275 0.80418 0.78058 1.19959 1.20339 1.19250 1.19955 1.01272 0.91023 1.07142 0.88370 0.88478 0.87357 0.90225 0.90336 0.93314 0.93400 0.77018 0.91592 0.91898 0.75403 0.88515 0.88464 0.87999 0.87549 0.85677 0.92170 0.86859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.08 14.32 29.01 0.42 -0.66 16 2 C -0.16 -0.89 9.03 -36.03 -0.33 -1.21 16 3 C -0.09 -0.52 5.13 -27.88 -0.14 -0.67 16 4 C -0.10 -0.69 2.28 -90.62 -0.21 -0.90 16 5 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 6 C 0.08 0.47 6.32 37.16 0.23 0.70 16 7 O -0.57 -3.52 10.88 -35.23 -0.38 -3.91 16 8 C 0.13 1.35 5.07 -4.04 -0.02 1.33 16 9 N -0.73 -8.64 5.01 -60.29 -0.30 -8.94 16 10 C 0.51 8.13 7.82 -10.98 -0.09 8.05 16 11 O -0.53 -11.01 16.03 5.55 0.09 -10.92 16 12 C -0.09 -1.36 5.83 -29.04 -0.17 -1.53 16 13 C -0.03 -0.59 4.37 -104.65 -0.46 -1.05 16 14 C -0.20 -3.75 9.70 -39.53 -0.38 -4.13 16 15 C -0.08 -1.53 10.04 -39.61 -0.40 -1.92 16 16 C -0.23 -5.44 9.17 -39.40 -0.36 -5.80 16 17 C 0.15 4.02 6.65 -39.11 -0.26 3.76 16 18 O -0.18 -5.44 9.76 0.05 0.00 -5.44 16 19 C -0.39 -11.38 9.49 30.89 0.29 -11.08 16 20 H 0.09 2.45 5.21 -52.49 -0.27 2.17 16 21 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 22 N -0.87 -26.26 13.67 55.48 0.76 -25.50 16 23 Si 0.94 21.29 29.55 -169.99 -5.02 16.27 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 27 C -0.17 -4.03 9.65 -39.39 -0.38 -4.41 16 28 H 0.10 0.55 7.84 -52.49 -0.41 0.14 16 29 H 0.10 0.46 8.06 -52.48 -0.42 0.04 16 30 H 0.11 0.50 6.86 -52.49 -0.36 0.14 16 31 H 0.08 0.50 7.79 -51.93 -0.40 0.10 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.22 6.54 -51.93 -0.34 -0.12 16 34 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.38 0.90 9.12 45.56 0.42 1.31 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.41 4.06 6.29 -40.82 -0.26 3.80 16 39 H 0.10 1.13 8.09 -51.93 -0.42 0.71 16 40 H 0.10 1.25 8.08 -51.93 -0.42 0.83 16 41 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 42 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 43 H 0.13 2.91 5.64 -52.49 -0.30 2.61 16 44 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.11 2.54 8.06 -52.49 -0.42 2.12 16 LS Contribution 379.27 15.07 5.72 5.72 Total: -1.00 -36.57 379.27 -7.19 -43.76 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -5.71 Total: 7.52 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: -2.34 Total: -18.56 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: 0.46 Total: -34.44 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.29 Total: -20.27 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.57 -7.19 -43.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775564206.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.388 kcal (2) G-P(sol) polarization free energy of solvation -36.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds