Wall clock time and date at job start Tue Mar 31 2020 13:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50701 * 119.99770 * 2 1 4 4 C 1.52997 * 109.47194 * 124.99977 * 3 2 1 5 5 H 1.09003 * 109.46804 * 304.99973 * 4 3 2 6 6 C 1.53003 * 109.47170 * 64.99772 * 4 3 2 7 7 O 1.42899 * 109.47106 * 185.00423 * 6 4 3 8 8 C 1.53002 * 109.47066 * 184.99927 * 4 3 2 9 9 N 1.46503 * 109.46556 * 175.00037 * 8 4 3 10 10 C 1.34783 * 119.99585 * 179.97438 * 9 8 4 11 11 O 1.21284 * 119.99976 * 0.02562 * 10 9 8 12 12 C 1.50699 * 120.00059 * 179.97438 * 10 9 8 13 13 C 1.50699 * 109.47151 * 180.02562 * 12 10 9 14 14 C 1.38328 * 119.96224 * 270.02423 * 13 12 10 15 15 C 1.38281 * 120.13505 * 179.97438 * 14 13 12 16 16 C 1.38120 * 120.06679 * 359.68445 * 15 14 13 17 17 C 1.38852 * 119.93490 * 0.58817 * 16 15 14 18 18 O 1.35752 * 120.07221 * 179.70368 * 17 16 15 19 19 C 1.34829 * 116.99954 * 354.17311 * 18 17 16 20 20 H 1.07998 * 119.99999 * 5.03596 * 19 18 17 21 21 C 1.38656 * 119.99670 * 185.03445 * 19 18 17 22 22 N 1.31550 * 120.00275 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99668 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46814 * 90.00164 * 23 21 19 25 25 H 1.48501 * 109.47378 * 210.00272 * 23 21 19 26 26 H 1.48503 * 109.47143 * 330.00397 * 23 21 19 27 27 C 1.38073 * 119.96539 * 89.99818 * 13 12 10 28 28 H 1.07997 * 120.00192 * 0.02562 * 1 2 3 29 29 H 1.08003 * 119.99755 * 180.02562 * 1 2 3 30 30 H 1.07998 * 119.99669 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.46868 * 5.00091 * 3 2 1 32 32 H 1.09003 * 109.46946 * 244.99910 * 3 2 1 33 33 H 1.09001 * 109.46691 * 305.00095 * 6 4 3 34 34 H 1.09002 * 109.46905 * 65.00000 * 6 4 3 35 35 H 0.96697 * 113.99789 * 180.02562 * 7 6 4 36 36 H 1.08997 * 109.46933 * 54.99965 * 8 4 3 37 37 H 1.08997 * 109.46850 * 294.99787 * 8 4 3 38 38 H 0.97001 * 120.00603 * 0.02562 * 9 8 4 39 39 H 1.09004 * 109.46756 * 60.00007 * 12 10 9 40 40 H 1.08998 * 109.46908 * 300.00650 * 12 10 9 41 41 H 1.08001 * 119.93314 * 359.97438 * 14 13 12 42 42 H 1.07993 * 119.96315 * 179.97438 * 15 14 13 43 43 H 1.08001 * 120.03256 * 180.31909 * 16 15 14 44 44 H 0.96999 * 119.99936 * 179.97438 * 22 21 19 45 45 H 1.07996 * 120.03547 * 0.04988 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3332 1.1816 5 1 2.4883 1.1470 2.1060 6 6 4.0999 0.2510 0.9921 7 8 4.9373 0.1990 2.1489 8 6 3.7091 2.7047 1.2552 9 7 4.5484 2.7726 2.4541 10 6 5.2439 3.8943 2.7271 11 8 5.1746 4.8476 1.9806 12 6 6.1068 3.9644 3.9607 13 6 6.7708 5.3153 4.0331 14 6 8.0048 5.5112 3.4395 15 6 8.6171 6.7494 3.5033 16 6 7.9949 7.7964 4.1548 17 6 6.7588 7.6014 4.7565 18 8 6.1474 8.6268 5.4027 19 6 6.8451 9.7737 5.5287 20 1 7.8103 9.8735 5.0544 21 6 6.3234 10.8249 6.2671 22 7 5.1480 10.7032 6.8451 23 14 7.2903 12.4136 6.4422 24 1 6.9293 13.3372 5.3369 25 1 6.9662 13.0494 7.7445 26 1 8.7443 12.1170 6.3845 27 6 6.1466 6.3562 4.6914 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9354 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3585 2.1316 0.0896 32 1 2.6213 1.4026 -0.9314 33 1 3.6151 -0.7150 0.8509 34 1 4.7046 0.4857 0.1160 35 1 5.6371 -0.4664 2.0982 36 1 2.9467 3.4823 1.3008 37 1 4.3274 2.8536 0.3699 38 1 4.6041 2.0100 3.0510 39 1 6.8689 3.1864 3.9156 40 1 5.4881 3.8161 4.8457 41 1 8.4910 4.6954 2.9252 42 1 9.5807 6.8992 3.0393 43 1 8.4712 8.7646 4.1998 44 1 4.7832 11.4385 7.3620 45 1 5.1834 6.2024 5.1549 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775564206.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:21 Heat of formation + Delta-G solvation = -106.911905 kcal Electronic energy + Delta-G solvation = -25623.963849 eV Core-core repulsion = 21799.263507 eV Total energy + Delta-G solvation = -3824.700341 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.12536 -40.43079 -38.98577 -38.10743 -36.38646 -35.31085 -34.33861 -33.52101 -32.35439 -30.87329 -28.83050 -27.34011 -26.68407 -26.35140 -23.28353 -22.77501 -21.86085 -21.33851 -20.34191 -19.48475 -18.78795 -18.33719 -17.81745 -17.14861 -16.87494 -16.61866 -16.47051 -16.08215 -15.86062 -15.62544 -15.50126 -15.22598 -14.86604 -14.49294 -14.34821 -14.07906 -13.99325 -13.74492 -13.63026 -13.53574 -12.96176 -12.79472 -12.68340 -12.51389 -12.45793 -12.36747 -12.21308 -12.09686 -11.78720 -11.56179 -11.19814 -10.94581 -10.79712 -10.72299 -10.21431 -9.95806 -9.62410 -8.97033 -8.46514 -6.15158 0.53469 0.76606 1.33876 1.40766 1.44134 1.52286 1.74318 2.18098 2.32721 2.86293 3.18520 3.34379 3.45340 3.67976 3.83202 3.91085 4.11300 4.23906 4.25955 4.30031 4.30652 4.32983 4.45327 4.53591 4.59855 4.62645 4.66285 4.68169 4.74558 4.76914 4.89410 5.00465 5.08606 5.13623 5.14269 5.24485 5.31886 5.59982 5.66070 5.73561 5.76774 5.77416 5.90256 6.03398 6.24764 6.70409 6.97768 7.01010 7.42734 7.79840 8.77209 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.021845 B = 0.002196 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.468983 B =12748.889890 C =13572.299638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.158 4.158 3 C -0.085 4.085 4 C -0.086 4.086 5 H 0.083 0.917 6 C 0.083 3.917 7 O -0.589 6.589 8 C 0.124 3.876 9 N -0.705 5.705 10 C 0.509 3.491 11 O -0.587 6.587 12 C -0.090 4.090 13 C -0.024 4.024 14 C -0.181 4.181 15 C -0.073 4.073 16 C -0.247 4.247 17 C 0.111 3.889 18 O -0.235 6.235 19 C -0.414 4.414 20 H 0.101 0.899 21 C -0.026 4.026 22 N -0.923 5.923 23 Si 1.022 2.978 24 H -0.264 1.264 25 H -0.269 1.269 26 H -0.252 1.252 27 C -0.195 4.195 28 H 0.093 0.907 29 H 0.107 0.893 30 H 0.123 0.877 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.050 0.950 35 H 0.400 0.600 36 H 0.047 0.953 37 H 0.057 0.943 38 H 0.421 0.579 39 H 0.142 0.858 40 H 0.116 0.884 41 H 0.147 0.853 42 H 0.147 0.853 43 H 0.119 0.881 44 H 0.272 0.728 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.110 -27.313 -12.566 30.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.176 4.176 3 C -0.122 4.122 4 C -0.105 4.105 5 H 0.101 0.899 6 C 0.005 3.995 7 O -0.398 6.398 8 C 0.000 4.000 9 N -0.361 5.361 10 C 0.296 3.704 11 O -0.467 6.467 12 C -0.129 4.129 13 C -0.025 4.025 14 C -0.199 4.199 15 C -0.091 4.091 16 C -0.266 4.266 17 C 0.061 3.939 18 O -0.142 6.142 19 C -0.490 4.490 20 H 0.118 0.882 21 C -0.223 4.223 22 N -0.561 5.561 23 Si 0.840 3.160 24 H -0.189 1.189 25 H -0.193 1.193 26 H -0.175 1.175 27 C -0.214 4.214 28 H 0.112 0.888 29 H 0.125 0.875 30 H 0.141 0.859 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.251 0.749 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.261 0.739 39 H 0.160 0.840 40 H 0.134 0.866 41 H 0.165 0.835 42 H 0.164 0.836 43 H 0.136 0.864 44 H 0.081 0.919 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.922 -26.078 -12.675 29.059 hybrid contribution 0.250 0.482 0.256 0.600 sum -1.672 -25.597 -12.418 28.499 Atomic orbital electron populations 1.24055 0.96275 1.02433 1.00720 1.23003 0.96040 0.98343 1.00231 1.20653 0.97498 0.96438 0.97659 1.21315 0.95969 0.92724 1.00480 0.89897 1.22260 0.91351 0.98008 0.87836 1.86194 1.48438 1.63615 1.41552 1.21350 0.93344 0.97386 0.87926 1.45971 1.46589 1.16391 1.27173 1.20926 0.80150 0.82214 0.87074 1.90734 1.65834 1.38279 1.51863 1.20668 1.00068 0.95388 0.96819 1.19207 0.94348 0.93883 0.95056 1.20972 0.96284 0.98182 1.04463 1.21138 0.99645 0.92119 0.96212 1.21291 0.97324 1.01217 1.06770 1.19874 0.92653 0.88933 0.92397 1.83937 1.42064 1.20394 1.67794 1.21837 1.03675 0.89671 1.33833 0.88208 1.26648 0.97689 1.03031 0.94945 1.70195 1.18692 1.34160 1.33076 0.84555 0.78143 0.74807 0.78456 1.18927 1.19345 1.17535 1.20221 1.01416 0.91380 1.08390 0.88828 0.87469 0.85873 0.91082 0.89671 0.91392 0.93167 0.74941 0.93467 0.92465 0.73872 0.84046 0.86550 0.83518 0.83558 0.86359 0.91859 0.87757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.98 14.32 67.77 0.97 -1.01 16 2 C -0.16 -1.47 9.03 25.64 0.23 -1.24 16 3 C -0.08 -0.92 5.13 29.85 0.15 -0.76 16 4 C -0.09 -1.08 2.28 -10.79 -0.02 -1.11 16 5 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 6 C 0.08 0.72 6.32 71.98 0.45 1.17 16 7 O -0.59 -5.20 10.88 -148.98 -1.62 -6.82 16 8 C 0.12 2.51 5.07 86.38 0.44 2.95 16 9 N -0.71 -15.38 5.01 -463.05 -2.32 -17.69 16 10 C 0.51 15.34 7.82 87.66 0.69 16.03 16 11 O -0.59 -24.38 16.03 -3.04 -0.05 -24.43 16 12 C -0.09 -2.36 5.83 29.10 0.17 -2.19 16 13 C -0.02 -0.91 4.37 -19.88 -0.09 -0.99 16 14 C -0.18 -6.27 9.70 22.30 0.22 -6.05 16 15 C -0.07 -2.78 10.04 22.25 0.22 -2.56 16 16 C -0.25 -11.78 9.17 22.39 0.21 -11.57 16 17 C 0.11 6.08 6.65 22.58 0.15 6.23 16 18 O -0.23 -15.15 9.76 -22.74 -0.22 -15.38 16 19 C -0.41 -25.52 9.49 67.92 0.64 -24.88 16 20 H 0.10 5.67 5.21 -2.91 -0.02 5.65 16 21 C -0.03 -1.56 5.49 84.83 0.47 -1.09 16 22 N -0.92 -59.03 13.67 21.61 0.30 -58.73 16 23 Si 1.02 44.79 29.55 68.60 2.03 46.82 16 24 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 25 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 26 H -0.25 -10.22 7.11 99.48 0.71 -9.51 16 27 C -0.19 -9.26 9.65 22.39 0.22 -9.04 16 28 H 0.09 0.99 7.84 -2.91 -0.02 0.97 16 29 H 0.11 0.84 8.06 -2.91 -0.02 0.81 16 30 H 0.12 0.78 6.86 -2.91 -0.02 0.76 16 31 H 0.07 0.88 7.79 -2.39 -0.02 0.86 16 32 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.07 0.36 6.54 -2.39 -0.02 0.34 16 34 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.40 0.38 9.12 -74.06 -0.68 -0.29 16 36 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.42 7.12 6.29 -92.71 -0.58 6.53 16 39 H 0.14 2.49 8.09 -2.38 -0.02 2.47 16 40 H 0.12 2.66 8.08 -2.39 -0.02 2.64 16 41 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16 42 H 0.15 4.35 8.06 -2.91 -0.02 4.32 16 43 H 0.12 5.67 5.64 -2.91 -0.02 5.65 16 44 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 45 H 0.10 4.97 8.06 -2.91 -0.02 4.95 16 Total: -1.00 -86.42 379.27 2.98 -83.44 By element: Atomic # 1 Polarization: 29.16 SS G_CDS: -0.25 Total: 28.92 kcal Atomic # 6 Polarization: -41.24 SS G_CDS: 5.11 Total: -36.12 kcal Atomic # 7 Polarization: -74.40 SS G_CDS: -2.02 Total: -76.43 kcal Atomic # 8 Polarization: -44.73 SS G_CDS: -1.89 Total: -46.62 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -86.42 2.98 -83.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775564206.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.472 kcal (2) G-P(sol) polarization free energy of solvation -86.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds