Wall clock time and date at job start Tue Mar 31 2020 13:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21283 * 119.99676 * 2 1 4 4 N 1.34773 * 120.00342 * 179.97438 * 2 1 3 5 5 C 1.46491 * 120.00100 * 180.02562 * 4 2 1 6 6 H 1.08996 * 109.47655 * 35.00459 * 5 4 2 7 7 C 1.50705 * 109.47278 * 155.00384 * 5 4 2 8 8 O 1.20826 * 119.99664 * 0.27374 * 7 5 4 9 9 O 1.34225 * 120.00637 * 180.02562 * 7 5 4 10 10 C 1.45200 * 117.00514 * 179.97438 * 9 7 5 11 11 C 1.50696 * 109.46936 * 179.97438 * 10 9 7 12 12 C 1.38638 * 119.75298 * 269.72564 * 11 10 9 13 13 C 1.37618 * 120.24562 * 179.72738 * 12 11 10 14 14 C 1.40714 * 119.74435 * 0.56874 * 13 12 11 15 15 C 1.41397 * 120.24177 * 179.68291 * 14 13 12 16 16 H 1.08001 * 120.00291 * 204.40710 * 15 14 13 17 17 C 1.39947 * 119.99876 * 24.40901 * 15 14 13 18 18 N 1.30833 * 120.00137 * 17.84747 * 17 15 14 19 19 Si 1.86798 * 120.00140 * 197.84297 * 17 15 14 20 20 H 1.48508 * 109.46847 * 60.00297 * 19 17 15 21 21 H 1.48501 * 109.47533 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47453 * 300.00405 * 19 17 15 23 23 C 1.40711 * 119.51538 * 359.70743 * 14 13 12 24 24 C 1.37615 * 119.74493 * 359.97438 * 23 14 13 25 25 C 1.53000 * 109.46992 * 274.99866 * 5 4 2 26 26 C 1.52995 * 109.47174 * 60.00167 * 25 5 4 27 27 C 1.53001 * 109.47116 * 180.02562 * 25 5 4 28 28 H 1.08997 * 109.47673 * 270.00064 * 1 2 3 29 29 H 1.09002 * 109.46617 * 30.00154 * 1 2 3 30 30 H 1.08996 * 109.46691 * 149.99992 * 1 2 3 31 31 H 0.97005 * 119.99440 * 0.02562 * 4 2 1 32 32 H 1.08994 * 109.46612 * 300.00210 * 10 9 7 33 33 H 1.09002 * 109.46492 * 59.99669 * 10 9 7 34 34 H 1.07997 * 119.87275 * 359.97438 * 12 11 10 35 35 H 1.07997 * 120.12220 * 180.28383 * 13 12 11 36 36 H 0.96997 * 119.99645 * 179.97438 * 18 17 15 37 37 H 1.08001 * 120.12863 * 179.97438 * 23 14 13 38 38 H 1.08001 * 119.88165 * 179.97438 * 24 23 14 39 39 H 1.09001 * 109.47149 * 300.00077 * 25 5 4 40 40 H 1.09001 * 109.47156 * 59.99914 * 26 25 5 41 41 H 1.09000 * 109.47471 * 179.97438 * 26 25 5 42 42 H 1.08995 * 109.47061 * 299.99813 * 26 25 5 43 43 H 1.09010 * 109.47074 * 60.00756 * 27 25 5 44 44 H 1.08997 * 109.47505 * 179.97438 * 27 25 5 45 45 H 1.08996 * 109.47573 * 300.00619 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 3.6459 -1.1671 0.0011 6 1 4.0090 -0.3252 0.5905 7 6 4.1481 -2.4547 0.6020 8 8 3.3628 -3.2891 0.9854 9 8 5.4677 -2.6768 0.7067 10 6 5.8792 -3.9384 1.2960 11 6 7.3841 -4.0098 1.3298 12 6 8.0712 -4.5569 0.2571 13 6 9.4457 -4.6220 0.2749 14 6 10.1530 -4.1417 1.3925 15 6 11.5650 -4.2096 1.4247 16 1 12.0835 -4.2248 2.3720 17 6 12.2907 -4.2570 0.2290 18 7 11.7260 -3.8937 -0.8938 19 14 14.0657 -4.8390 0.2362 20 1 14.1280 -6.2313 0.7492 21 1 14.6062 -4.7968 -1.1463 22 1 14.8739 -3.9524 1.1115 23 6 9.4449 -3.5937 2.4780 24 6 8.0707 -3.5327 2.4357 25 6 4.1564 -1.0417 -1.4358 26 6 3.6466 0.2655 -2.0459 27 6 5.6864 -1.0422 -1.4353 28 1 -0.3634 0.0000 1.0276 29 1 -0.3632 0.8900 -0.5139 30 1 -0.3632 -0.8900 -0.5138 31 1 1.6959 -2.0072 0.0005 32 1 5.4888 -4.0096 2.3111 33 1 5.4900 -4.7626 0.6983 34 1 7.5259 -4.9297 -0.5973 35 1 9.9792 -5.0445 -0.5638 36 1 12.2292 -3.9263 -1.7224 37 1 9.9777 -3.2225 3.3409 38 1 7.5250 -3.1129 3.2678 39 1 3.7933 -1.8836 -2.0251 40 1 4.0097 1.1075 -1.4565 41 1 4.0107 0.3551 -3.0694 42 1 2.5567 0.2654 -2.0463 43 1 6.0493 -1.9739 -1.0008 44 1 6.0502 -0.9534 -2.4589 45 1 6.0499 -0.2006 -0.8457 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776109858.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:46 Heat of formation + Delta-G solvation = -132.502978 kcal Electronic energy + Delta-G solvation = -26607.072381 eV Core-core repulsion = 22781.262327 eV Total energy + Delta-G solvation = -3825.810053 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.06521 -40.63594 -39.47383 -37.71941 -37.23548 -35.68962 -34.46462 -32.60913 -31.22648 -30.96355 -29.37782 -28.24460 -27.51033 -25.52661 -22.96285 -22.72502 -21.89890 -21.80795 -21.25638 -19.26920 -19.00047 -18.35436 -17.73319 -17.39985 -17.16662 -16.80765 -16.55104 -15.93216 -15.62037 -15.49319 -14.96705 -14.62582 -14.51716 -14.22908 -14.08664 -13.84887 -13.75727 -13.56474 -13.50234 -13.29793 -13.11814 -12.91164 -12.83641 -12.72145 -12.60839 -12.48046 -12.12797 -12.00345 -11.88495 -11.70563 -11.46521 -11.43821 -11.26970 -11.03641 -10.96029 -10.24865 -9.42778 -9.32303 -8.68693 -6.39443 0.70081 0.98846 1.11947 1.35731 1.39783 1.50173 1.58024 1.69299 2.19000 2.31248 2.71088 3.45348 3.63505 3.75468 3.82580 3.92899 4.07260 4.11974 4.22227 4.29459 4.47248 4.49709 4.55021 4.55392 4.58346 4.68868 4.79749 4.93736 5.00409 5.01339 5.07448 5.11495 5.11888 5.22029 5.31007 5.36651 5.40583 5.41198 5.53667 5.65453 5.89032 6.05816 6.14843 6.32851 6.44865 6.59115 6.64816 6.88857 6.97563 7.17537 8.27503 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.024774 B = 0.002593 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.947900 B =10794.150823 C =11399.754002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.510 3.490 3 O -0.578 6.578 4 N -0.711 5.711 5 C 0.160 3.840 6 H 0.114 0.886 7 C 0.461 3.539 8 O -0.527 6.527 9 O -0.343 6.343 10 C 0.137 3.863 11 C -0.227 4.227 12 C -0.077 4.077 13 C -0.194 4.194 14 C 0.088 3.912 15 C -0.494 4.494 16 H 0.078 0.922 17 C 0.036 3.964 18 N -0.816 5.816 19 Si 0.983 3.017 20 H -0.260 1.260 21 H -0.267 1.267 22 H -0.259 1.259 23 C -0.247 4.247 24 C -0.066 4.066 25 C -0.089 4.089 26 C -0.127 4.127 27 C -0.157 4.157 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.418 0.582 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.291 0.709 37 H 0.100 0.900 38 H 0.116 0.884 39 H 0.083 0.917 40 H 0.050 0.950 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.691 3.668 -2.734 18.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.300 3.700 3 O -0.457 6.457 4 N -0.366 5.366 5 C 0.052 3.948 6 H 0.132 0.868 7 C 0.304 3.696 8 O -0.417 6.417 9 O -0.258 6.258 10 C 0.065 3.935 11 C -0.228 4.228 12 C -0.095 4.095 13 C -0.213 4.213 14 C 0.085 3.915 15 C -0.522 4.522 16 H 0.097 0.903 17 C -0.181 4.181 18 N -0.441 5.441 19 Si 0.803 3.197 20 H -0.184 1.184 21 H -0.191 1.191 22 H -0.184 1.184 23 C -0.266 4.266 24 C -0.084 4.084 25 C -0.109 4.109 26 C -0.184 4.184 27 C -0.215 4.215 28 H 0.127 0.873 29 H 0.118 0.882 30 H 0.124 0.876 31 H 0.256 0.744 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.126 0.874 35 H 0.122 0.878 36 H 0.101 0.899 37 H 0.118 0.882 38 H 0.134 0.866 39 H 0.102 0.898 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.432 4.174 -2.851 18.150 hybrid contribution 0.885 -0.704 0.128 1.138 sum -16.547 3.469 -2.723 17.125 Atomic orbital electron populations 1.21911 0.87471 1.06491 1.06323 1.21591 0.92289 0.82224 0.73900 1.90747 1.71636 1.32526 1.50808 1.45925 1.04489 1.10642 1.75553 1.20503 0.82853 0.92959 0.98449 0.86834 1.23869 0.81503 0.88844 0.75375 1.90606 1.57137 1.46967 1.47029 1.86806 1.24204 1.41878 1.72957 1.21656 0.91574 0.82454 0.97835 1.18944 0.92523 1.13742 0.97638 1.20760 0.93949 0.98300 0.96512 1.21267 0.93210 1.06261 1.00559 1.18031 0.94010 0.87713 0.91707 1.19900 0.92081 1.46078 0.94183 0.90349 1.26800 1.05355 0.91771 0.94134 1.69866 1.40694 1.32863 1.00697 0.85240 0.75922 0.79838 0.78682 1.18424 1.19102 1.18353 1.21160 0.94243 1.10050 1.01150 1.20706 0.93722 0.96927 0.97020 1.21377 0.96607 1.00420 0.92487 1.21762 1.00765 0.95391 1.00462 1.22024 0.93721 1.03250 1.02488 0.87278 0.88153 0.87585 0.74375 0.90823 0.90810 0.87370 0.87791 0.89867 0.88202 0.86638 0.89843 0.93063 0.91687 0.92695 0.91527 0.91445 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 10.30 71.24 0.73 -0.76 16 2 C 0.51 9.64 6.29 87.66 0.55 10.19 16 3 O -0.58 -15.59 14.22 -3.04 -0.04 -15.63 16 4 N -0.71 -13.53 4.84 -446.11 -2.16 -15.69 16 5 C 0.16 3.85 2.38 44.25 0.11 3.96 16 6 H 0.11 3.03 7.58 -2.39 -0.02 3.01 16 7 C 0.46 13.14 7.25 71.24 0.52 13.66 16 8 O -0.53 -15.99 15.58 21.96 0.34 -15.65 16 9 O -0.34 -11.25 7.12 -51.37 -0.37 -11.61 16 10 C 0.14 4.66 5.58 71.23 0.40 5.06 16 11 C -0.23 -9.40 5.54 -19.67 -0.11 -9.51 16 12 C -0.08 -3.44 9.67 22.22 0.21 -3.23 16 13 C -0.19 -9.96 8.70 22.73 0.20 -9.76 16 14 C 0.09 4.67 5.57 -21.29 -0.12 4.56 16 15 C -0.49 -26.12 9.05 23.46 0.21 -25.90 16 16 H 0.08 3.98 7.91 -2.91 -0.02 3.96 16 17 C 0.04 1.75 5.14 85.26 0.44 2.19 16 18 N -0.82 -41.70 10.95 21.83 0.24 -41.46 16 19 Si 0.98 37.17 29.59 68.60 2.03 39.20 16 20 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 21 H -0.27 -9.52 7.11 99.48 0.71 -8.81 16 22 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 23 C -0.25 -11.93 9.80 22.73 0.22 -11.71 16 24 C -0.07 -2.81 9.67 22.22 0.21 -2.60 16 25 C -0.09 -2.03 2.68 -10.79 -0.03 -2.06 16 26 C -0.13 -2.76 7.72 71.98 0.56 -2.20 16 27 C -0.16 -4.20 8.67 71.98 0.62 -3.57 16 28 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.42 6.60 7.79 -92.70 -0.72 5.88 16 32 H 0.07 2.35 8.08 -2.39 -0.02 2.33 16 33 H 0.07 2.36 8.07 -2.39 -0.02 2.34 16 34 H 0.11 4.31 8.06 -2.91 -0.02 4.29 16 35 H 0.10 5.58 6.16 -2.91 -0.02 5.56 16 36 H 0.29 13.39 8.30 -92.71 -0.77 12.62 16 37 H 0.10 4.57 8.06 -2.91 -0.02 4.54 16 38 H 0.12 4.26 8.06 -2.91 -0.02 4.24 16 39 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.05 1.29 7.53 -2.39 -0.02 1.27 16 41 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.05 1.16 5.77 -2.39 -0.01 1.14 16 43 H 0.07 2.08 5.33 -2.38 -0.01 2.07 16 44 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -62.78 371.33 5.05 -57.73 By element: Atomic # 1 Polarization: 34.51 SS G_CDS: 0.28 Total: 34.79 kcal Atomic # 6 Polarization: -36.42 SS G_CDS: 4.73 Total: -31.69 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: -1.92 Total: -57.15 kcal Atomic # 8 Polarization: -42.82 SS G_CDS: -0.07 Total: -42.89 kcal Atomic # 14 Polarization: 37.17 SS G_CDS: 2.03 Total: 39.20 kcal Total: -62.78 5.05 -57.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776109858.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.773 kcal (2) G-P(sol) polarization free energy of solvation -62.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds