Wall clock time and date at job start Tue Mar 31 2020 12:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.47275 * 2 1 4 4 C 1.53001 * 109.46773 * 239.99669 * 2 1 3 5 5 C 1.50703 * 109.46995 * 119.99969 * 2 1 3 6 6 O 1.21281 * 119.99909 * 359.97438 * 5 2 1 7 7 N 1.34769 * 119.99932 * 179.97438 * 5 2 1 8 8 C 1.46504 * 120.00106 * 179.97438 * 7 5 2 9 9 C 1.50697 * 109.47014 * 179.97438 * 8 7 5 10 10 O 1.20826 * 120.00427 * 0.02562 * 9 8 7 11 11 O 1.34236 * 119.99623 * 179.97438 * 9 8 7 12 12 C 1.45202 * 116.99861 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.47010 * 180.02562 * 12 11 9 14 14 C 1.38634 * 119.74914 * 269.72756 * 13 12 11 15 15 C 1.37619 * 120.24942 * 179.72155 * 14 13 12 16 16 C 1.40717 * 119.73953 * 0.57349 * 15 14 13 17 17 C 1.41400 * 120.23665 * 179.68462 * 16 15 14 18 18 H 1.08007 * 119.99684 * 155.31480 * 17 16 15 19 19 C 1.39939 * 120.00333 * 335.30310 * 17 16 15 20 20 N 1.30826 * 120.00025 * 342.23859 * 19 17 16 21 21 Si 1.86800 * 120.00117 * 162.23840 * 19 17 16 22 22 H 1.48494 * 109.47119 * 94.66408 * 21 19 17 23 23 H 1.48501 * 109.47377 * 214.66748 * 21 19 17 24 24 H 1.48501 * 109.47174 * 334.66670 * 21 19 17 25 25 C 1.40711 * 119.51509 * 359.69926 * 16 15 14 26 26 C 1.37617 * 119.74404 * 0.02562 * 25 16 15 27 27 H 1.08997 * 109.46707 * 300.00161 * 1 2 3 28 28 H 1.08999 * 109.46659 * 60.00191 * 1 2 3 29 29 H 1.08998 * 109.47118 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47243 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46997 * 300.00057 * 3 2 1 32 32 H 1.08996 * 109.46798 * 59.99770 * 3 2 1 33 33 H 1.08998 * 109.47680 * 300.00123 * 4 2 1 34 34 H 1.09001 * 109.47042 * 60.00223 * 4 2 1 35 35 H 1.09000 * 109.47057 * 179.97438 * 4 2 1 36 36 H 0.97000 * 120.00183 * 359.97438 * 7 5 2 37 37 H 1.09000 * 109.46789 * 59.99686 * 8 7 5 38 38 H 1.09003 * 109.47019 * 300.00091 * 8 7 5 39 39 H 1.08994 * 109.46999 * 300.00667 * 12 11 9 40 40 H 1.08996 * 109.46818 * 60.00402 * 12 11 9 41 41 H 1.08008 * 119.87481 * 359.97438 * 14 13 12 42 42 H 1.07995 * 120.12746 * 180.27730 * 15 14 13 43 43 H 0.97003 * 119.99697 * 179.97438 * 20 19 17 44 44 H 1.07997 * 120.12552 * 179.97438 * 25 16 15 45 45 H 1.07995 * 119.87428 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2305 6 8 1.2442 -1.1709 2.0290 7 7 3.3574 -0.8340 1.4435 8 6 3.8457 -1.5241 2.6400 9 6 5.3527 -1.5253 2.6393 10 8 5.9569 -1.0029 1.7327 11 8 6.0238 -2.1059 3.6464 12 6 7.4739 -2.0687 3.5802 13 6 8.0498 -2.7646 4.7864 14 6 8.3187 -2.0385 5.9364 15 6 8.8394 -2.6647 7.0458 16 6 9.1100 -4.0450 7.0056 17 6 9.6513 -4.6977 8.1372 18 1 9.4967 -5.7579 8.2744 19 6 10.3874 -3.9703 9.0791 20 7 10.8724 -2.7965 8.7654 21 14 10.6776 -4.6754 10.7844 22 1 11.9874 -5.3743 10.8147 23 1 10.6807 -3.5747 11.7813 24 1 9.5953 -5.6377 11.1130 25 6 8.8385 -4.7708 5.8311 26 6 8.3125 -4.1249 4.7356 27 1 -0.3632 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1301 1.4425 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9563 0.8899 33 1 1.6767 -1.7490 -1.2493 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7210 -1.2495 36 1 3.9878 -0.4660 0.8047 37 1 3.4819 -2.5516 2.6407 38 1 3.4828 -1.0096 3.5298 39 1 7.8093 -2.5743 2.6748 40 1 7.8102 -1.0321 3.5633 41 1 8.1150 -0.9782 5.9631 42 1 9.0439 -2.0980 7.9421 43 1 11.3823 -2.2921 9.4185 44 1 9.0428 -5.8304 5.7893 45 1 8.1036 -4.6798 3.8330 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776110604.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:59 Heat of formation + Delta-G solvation = -140.153870 kcal Electronic energy + Delta-G solvation = -25447.686768 eV Core-core repulsion = 21621.544947 eV Total energy + Delta-G solvation = -3826.141821 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.84854 -41.00919 -39.50920 -37.74745 -36.66493 -35.70992 -35.70043 -32.66655 -31.24941 -30.07581 -28.66432 -28.23382 -27.89846 -25.62419 -23.95008 -22.97141 -22.18018 -21.81811 -20.78353 -19.28407 -18.64104 -18.26286 -17.80217 -17.34009 -17.18405 -16.77561 -16.41296 -15.91738 -15.61533 -15.57729 -15.03095 -14.85974 -14.74297 -14.36653 -14.16045 -13.90213 -13.84753 -13.54092 -13.33514 -13.27602 -13.07040 -13.06218 -12.90351 -12.79404 -12.62606 -12.43021 -12.24523 -11.91529 -11.88087 -11.77728 -11.73773 -11.48706 -11.30642 -11.04515 -10.86187 -10.36736 -9.45094 -9.35254 -8.70835 -6.40995 0.66924 0.99101 1.09983 1.33844 1.38821 1.51167 1.52231 1.61094 2.18270 2.26150 2.69689 3.45314 3.58585 3.76175 3.83070 3.90800 4.05174 4.08483 4.17757 4.19628 4.33477 4.46504 4.48348 4.54463 4.71521 4.71735 4.82875 4.94081 4.95402 4.99612 5.00116 5.08431 5.10689 5.23559 5.28875 5.32367 5.36281 5.36881 5.40090 5.63815 5.86687 6.04444 6.12313 6.30842 6.33369 6.55975 6.63047 6.87168 6.95630 7.06452 8.26171 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.032583 B = 0.001920 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.145331 B =14581.850191 C =14761.639683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.081 4.081 3 C -0.141 4.141 4 C -0.141 4.141 5 C 0.523 3.477 6 O -0.575 6.575 7 N -0.715 5.715 8 C 0.128 3.872 9 C 0.462 3.538 10 O -0.530 6.530 11 O -0.355 6.355 12 C 0.143 3.857 13 C -0.232 4.232 14 C -0.080 4.080 15 C -0.195 4.195 16 C 0.087 3.913 17 C -0.493 4.493 18 H 0.079 0.921 19 C 0.035 3.965 20 N -0.818 5.818 21 Si 0.983 3.017 22 H -0.261 1.261 23 H -0.265 1.265 24 H -0.258 1.258 25 C -0.246 4.246 26 C -0.064 4.064 27 H 0.049 0.951 28 H 0.088 0.912 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.417 0.583 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.108 0.892 42 H 0.103 0.897 43 H 0.291 0.709 44 H 0.102 0.898 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.112 7.242 -15.959 22.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.084 4.084 3 C -0.198 4.198 4 C -0.198 4.198 5 C 0.311 3.689 6 O -0.454 6.454 7 N -0.372 5.372 8 C 0.003 3.997 9 C 0.306 3.694 10 O -0.420 6.420 11 O -0.271 6.271 12 C 0.071 3.929 13 C -0.233 4.233 14 C -0.098 4.098 15 C -0.215 4.215 16 C 0.085 3.915 17 C -0.521 4.521 18 H 0.097 0.903 19 C -0.181 4.181 20 N -0.443 5.443 21 Si 0.804 3.196 22 H -0.186 1.186 23 H -0.190 1.190 24 H -0.182 1.182 25 C -0.266 4.266 26 C -0.083 4.083 27 H 0.069 0.931 28 H 0.107 0.893 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.110 0.890 35 H 0.084 0.916 36 H 0.256 0.744 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.126 0.874 42 H 0.121 0.879 43 H 0.101 0.899 44 H 0.121 0.879 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -14.264 7.247 -15.547 22.308 hybrid contribution 0.949 -0.166 0.769 1.232 sum -13.315 7.081 -14.778 21.114 Atomic orbital electron populations 1.21682 0.91604 1.02353 1.02774 1.20886 0.98192 0.97159 0.92209 1.21912 1.01671 0.92462 1.03790 1.21911 1.01677 1.00349 0.95872 1.21278 0.80927 0.78690 0.87990 1.90704 1.56079 1.50107 1.48483 1.45814 1.08010 1.58707 1.24653 1.20679 0.85627 1.01949 0.91461 1.23726 0.91915 0.74360 0.79448 1.90617 1.70824 1.43660 1.36890 1.86660 1.23918 1.70476 1.46022 1.21618 0.74286 1.00359 0.96674 1.18980 1.13419 0.94489 0.96460 1.20794 0.97661 0.98363 0.92978 1.21278 1.05874 0.95820 0.98487 1.18063 0.88426 0.92734 0.92321 1.19927 1.29776 0.96886 1.05552 0.90251 1.26819 0.92642 0.94626 1.04008 1.69867 1.24567 1.12931 1.36943 0.85171 0.79593 0.79057 0.75806 1.18578 1.18971 1.18215 1.21175 1.11906 0.99314 0.94175 1.20727 0.96586 0.93539 0.97413 0.93135 0.89345 0.93089 0.91618 0.88963 0.92673 0.92611 0.88976 0.91604 0.74381 0.86251 0.86398 0.90422 0.90957 0.87420 0.87856 0.89852 0.87938 0.86228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 7.76 71.99 0.56 -1.19 16 2 C -0.08 -1.12 0.87 -52.92 -0.05 -1.17 16 3 C -0.14 -1.47 8.37 71.98 0.60 -0.86 16 4 C -0.14 -1.44 8.37 71.98 0.60 -0.84 16 5 C 0.52 10.92 6.48 87.66 0.57 11.48 16 6 O -0.57 -16.40 15.98 -3.03 -0.05 -16.45 16 7 N -0.72 -13.90 5.31 -466.79 -2.48 -16.38 16 8 C 0.13 2.75 6.27 85.63 0.54 3.29 16 9 C 0.46 12.31 8.03 71.23 0.57 12.88 16 10 O -0.53 -15.38 15.42 21.96 0.34 -15.04 16 11 O -0.35 -11.36 10.20 -51.47 -0.53 -11.89 16 12 C 0.14 4.85 5.58 71.24 0.40 5.25 16 13 C -0.23 -9.70 5.54 -19.68 -0.11 -9.81 16 14 C -0.08 -3.63 9.67 22.22 0.21 -3.42 16 15 C -0.20 -10.17 8.70 22.73 0.20 -9.97 16 16 C 0.09 4.66 5.57 -21.29 -0.12 4.54 16 17 C -0.49 -26.14 9.05 23.46 0.21 -25.92 16 18 H 0.08 4.04 7.91 -2.91 -0.02 4.02 16 19 C 0.04 1.73 5.14 85.25 0.44 2.17 16 20 N -0.82 -41.89 10.97 21.82 0.24 -41.65 16 21 Si 0.98 37.25 29.59 68.60 2.03 39.28 16 22 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 23 H -0.27 -9.57 7.11 99.48 0.71 -8.86 16 24 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 25 C -0.25 -11.89 9.80 22.73 0.22 -11.67 16 26 C -0.06 -2.76 9.67 22.22 0.21 -2.54 16 27 H 0.05 0.82 8.10 -2.39 -0.02 0.80 16 28 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.05 0.83 8.10 -2.39 -0.02 0.81 16 30 H 0.06 0.65 7.57 -2.39 -0.02 0.64 16 31 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.06 0.64 7.56 -2.39 -0.02 0.62 16 36 H 0.42 7.23 6.28 -92.71 -0.58 6.65 16 37 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 39 H 0.08 2.43 8.07 -2.39 -0.02 2.41 16 40 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16 41 H 0.11 4.39 8.06 -2.91 -0.02 4.36 16 42 H 0.10 5.61 6.18 -2.91 -0.02 5.59 16 43 H 0.29 13.37 8.30 -92.71 -0.77 12.60 16 44 H 0.10 4.64 8.06 -2.91 -0.02 4.62 16 45 H 0.12 4.31 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -63.80 380.95 5.03 -58.77 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: 0.41 Total: 31.14 kcal Atomic # 6 Polarization: -32.84 SS G_CDS: 5.06 Total: -27.78 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: -2.24 Total: -58.03 kcal Atomic # 8 Polarization: -43.14 SS G_CDS: -0.24 Total: -43.38 kcal Atomic # 14 Polarization: 37.25 SS G_CDS: 2.03 Total: 39.28 kcal Total: -63.80 5.03 -58.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776110604.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.383 kcal (2) G-P(sol) polarization free energy of solvation -63.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds