Wall clock time and date at job start Tue Mar 31 2020 13:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46821 * 2 1 4 4 C 1.53003 * 109.46821 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47263 * 55.00295 * 4 3 2 6 6 N 1.46502 * 109.47292 * 294.99846 * 4 3 2 7 7 C 1.34776 * 119.99467 * 85.00128 * 6 4 3 8 8 O 1.21280 * 120.00467 * 359.97438 * 7 6 4 9 9 C 1.50700 * 119.99698 * 179.97438 * 7 6 4 10 10 C 1.50700 * 109.47245 * 179.97438 * 9 7 6 11 11 C 1.37633 * 120.12704 * 264.99949 * 10 9 7 12 12 C 1.38617 * 120.24951 * 179.70400 * 11 10 9 13 13 C 1.38653 * 120.49845 * 0.02562 * 12 11 10 14 14 C 1.37603 * 120.24874 * 0.02790 * 13 12 11 15 15 C 1.40693 * 120.12523 * 84.72546 * 10 9 7 16 16 C 1.41395 * 120.24530 * 0.25239 * 15 10 9 17 17 H 1.07997 * 120.00254 * 334.03758 * 16 15 10 18 18 C 1.39956 * 119.99963 * 154.03430 * 16 15 10 19 19 N 1.30823 * 119.99664 * 343.67987 * 18 16 15 20 20 Si 1.86795 * 119.99774 * 163.67809 * 18 16 15 21 21 H 1.48501 * 109.46857 * 90.00394 * 20 18 16 22 22 H 1.48495 * 109.47233 * 210.00092 * 20 18 16 23 23 H 1.48499 * 109.47182 * 330.00489 * 20 18 16 24 24 C 1.50706 * 109.47041 * 174.99792 * 4 3 2 25 25 O 1.20821 * 119.99474 * 120.00256 * 24 4 3 26 26 O 1.34222 * 120.00233 * 300.00123 * 24 4 3 27 27 C 1.45200 * 117.00271 * 179.97438 * 26 24 4 28 28 H 1.09001 * 109.47101 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47043 * 300.00153 * 1 2 3 30 30 H 1.09000 * 109.47375 * 60.00106 * 1 2 3 31 31 H 1.08999 * 109.47043 * 239.99847 * 2 1 3 32 32 H 1.09004 * 109.46905 * 119.99919 * 2 1 3 33 33 H 1.08999 * 109.47437 * 60.00088 * 3 2 1 34 34 H 1.09004 * 109.47315 * 299.99668 * 3 2 1 35 35 H 0.96998 * 120.00025 * 265.00152 * 6 4 3 36 36 H 1.09003 * 109.47161 * 59.99651 * 9 7 6 37 37 H 1.08995 * 109.47322 * 300.00481 * 9 7 6 38 38 H 1.08000 * 119.87785 * 359.72819 * 11 10 9 39 39 H 1.08000 * 119.75177 * 180.02562 * 12 11 10 40 40 H 1.08004 * 119.88139 * 179.97438 * 13 12 11 41 41 H 1.08009 * 120.12583 * 179.97438 * 14 13 12 42 42 H 0.97005 * 119.99322 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.47367 * 180.02562 * 27 26 24 44 44 H 1.08995 * 109.46824 * 300.00229 * 27 26 24 45 45 H 1.09002 * 109.46748 * 59.99832 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8530 -0.8410 6 7 4.0578 0.8590 1.2528 7 6 4.1865 -0.4777 1.3681 8 8 3.8980 -1.1974 0.4355 9 6 4.6889 -1.0779 2.6558 10 6 4.7389 -2.5784 2.5248 11 6 3.6836 -3.3457 2.9628 12 6 3.7244 -4.7256 2.8380 13 6 4.8262 -5.3487 2.2721 14 6 5.8931 -4.6016 1.8284 15 6 5.8622 -3.1998 1.9490 16 6 6.9521 -2.4217 1.4951 17 1 6.7951 -1.3968 1.1931 18 6 8.2342 -2.9798 1.4372 19 7 8.4962 -4.0854 2.0855 20 14 9.5713 -2.1459 0.4341 21 1 10.3016 -1.1776 1.2909 22 1 10.5191 -3.1693 -0.0751 23 1 8.9560 -1.4278 -0.7109 24 6 4.0724 2.8579 -0.1232 25 8 4.7666 3.3306 0.7453 26 8 3.7485 3.5934 -1.1983 27 6 4.2672 4.9486 -1.2506 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 4.2882 1.4346 1.9987 36 1 4.0164 -0.8068 3.4697 37 1 5.6880 -0.6978 2.8684 38 1 2.8203 -2.8708 3.4051 39 1 2.8916 -5.3199 3.1840 40 1 4.8476 -6.4246 2.1801 41 1 6.7506 -5.0891 1.3883 42 1 9.3848 -4.4724 2.0451 43 1 3.9313 5.4311 -2.1685 44 1 3.9027 5.5105 -0.3908 45 1 5.3568 4.9215 -1.2315 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777462008.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:47 Heat of formation + Delta-G solvation = -133.507718 kcal Electronic energy + Delta-G solvation = -27325.319499 eV Core-core repulsion = 23499.465877 eV Total energy + Delta-G solvation = -3825.853622 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.97096 -40.74173 -39.20910 -37.74558 -36.77462 -35.48618 -34.50732 -33.35244 -31.36160 -31.01163 -28.68336 -28.12749 -26.84261 -25.68850 -22.82116 -22.59883 -22.21475 -21.52166 -21.04812 -19.11795 -18.81920 -18.36547 -17.73832 -17.33571 -17.20133 -16.59781 -16.53826 -16.15812 -15.63748 -15.32249 -15.12106 -14.78677 -14.56572 -14.38856 -14.27410 -14.10291 -13.63331 -13.43704 -13.36887 -13.10789 -12.89598 -12.75694 -12.71371 -12.61132 -12.56532 -12.45449 -12.14353 -12.07702 -11.87154 -11.51127 -11.42526 -11.29673 -11.19646 -11.01782 -10.73956 -10.13076 -9.19877 -9.13939 -8.59178 -6.28011 0.94170 0.99344 1.13259 1.34140 1.39023 1.45052 1.52860 1.84876 2.19044 2.37009 2.79595 3.48279 3.76431 3.83491 3.94218 4.14084 4.21947 4.29336 4.31138 4.33313 4.43037 4.50423 4.62618 4.66683 4.69843 4.73572 4.77639 4.83070 4.89283 4.97047 5.08146 5.17057 5.21350 5.29225 5.32138 5.39337 5.42789 5.55858 5.57143 5.79463 6.06117 6.18710 6.24437 6.44313 6.48976 6.57810 6.76405 7.00904 7.13406 7.38183 8.37203 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.010996 B = 0.004635 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.704273 B = 6040.092497 C = 8042.369935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.117 4.117 3 C -0.110 4.110 4 C 0.153 3.847 5 H 0.110 0.890 6 N -0.718 5.718 7 C 0.527 3.473 8 O -0.548 6.548 9 C -0.070 4.070 10 C -0.183 4.183 11 C -0.088 4.088 12 C -0.240 4.240 13 C -0.117 4.117 14 C -0.193 4.193 15 C 0.098 3.902 16 C -0.483 4.483 17 H 0.069 0.931 18 C 0.038 3.962 19 N -0.826 5.826 20 Si 0.966 3.034 21 H -0.259 1.259 22 H -0.266 1.266 23 H -0.269 1.269 24 C 0.469 3.531 25 O -0.524 6.524 26 O -0.353 6.353 27 C 0.027 3.973 28 H 0.047 0.953 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.414 0.586 36 H 0.113 0.887 37 H 0.093 0.907 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.104 0.896 41 H 0.095 0.905 42 H 0.285 0.715 43 H 0.136 0.864 44 H 0.069 0.931 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.309 16.022 -4.022 19.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.154 4.154 3 C -0.149 4.149 4 C 0.046 3.954 5 H 0.128 0.872 6 N -0.375 5.375 7 C 0.315 3.685 8 O -0.424 6.424 9 C -0.109 4.109 10 C -0.185 4.185 11 C -0.106 4.106 12 C -0.259 4.259 13 C -0.135 4.135 14 C -0.213 4.213 15 C 0.096 3.904 16 C -0.513 4.513 17 H 0.087 0.913 18 C -0.176 4.176 19 N -0.452 5.452 20 Si 0.788 3.212 21 H -0.183 1.183 22 H -0.191 1.191 23 H -0.194 1.194 24 C 0.312 3.688 25 O -0.413 6.413 26 O -0.268 6.268 27 C -0.066 4.066 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.100 0.900 34 H 0.120 0.880 35 H 0.252 0.748 36 H 0.131 0.869 37 H 0.111 0.889 38 H 0.135 0.865 39 H 0.133 0.867 40 H 0.122 0.878 41 H 0.113 0.887 42 H 0.096 0.904 43 H 0.154 0.846 44 H 0.088 0.912 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.103 15.527 -4.399 19.039 hybrid contribution 1.336 0.225 -0.021 1.355 sum -8.767 15.752 -4.420 18.561 Atomic orbital electron populations 1.21734 0.94336 1.01658 1.02477 1.21497 0.96550 0.95483 1.01904 1.21950 0.89793 0.98468 1.04677 1.20479 0.97113 0.87354 0.90421 0.87236 1.45811 1.69009 1.07026 1.15668 1.20960 0.75983 0.81166 0.90396 1.90690 1.49341 1.61043 1.41350 1.20265 1.02986 0.93009 0.94683 1.19459 0.97533 0.93577 1.07940 1.20710 0.96758 0.93850 0.99264 1.20710 0.99547 0.94807 1.10884 1.20941 0.94565 0.98376 0.99647 1.21289 0.98517 0.94995 1.06458 1.17684 0.92094 0.92241 0.88351 1.19603 0.92526 0.99159 1.40030 0.91302 1.26599 1.01764 0.95107 0.94153 1.69880 1.23293 1.19064 1.32971 0.85443 0.77553 0.79028 0.79171 1.18305 1.19058 1.19353 1.23674 0.76881 0.88683 0.79547 1.90661 1.36297 1.72820 1.41524 1.86487 1.69489 1.28499 1.42359 1.23641 0.99833 0.77674 1.05432 0.93385 0.92010 0.91409 0.93245 0.93538 0.89992 0.87951 0.74849 0.86936 0.88925 0.86477 0.86722 0.87810 0.88676 0.90416 0.84608 0.91228 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.91 71.98 0.71 -2.22 16 2 C -0.12 -3.03 4.54 30.59 0.14 -2.89 16 3 C -0.11 -2.32 4.85 30.59 0.15 -2.17 16 4 C 0.15 3.96 2.77 44.25 0.12 4.08 16 5 H 0.11 3.24 7.58 -2.39 -0.02 3.22 16 6 N -0.72 -20.92 4.90 -446.08 -2.19 -23.11 16 7 C 0.53 19.56 6.02 87.66 0.53 20.09 16 8 O -0.55 -24.44 13.17 -3.03 -0.04 -24.48 16 9 C -0.07 -2.67 5.18 29.10 0.15 -2.52 16 10 C -0.18 -8.70 4.43 -19.41 -0.09 -8.79 16 11 C -0.09 -3.87 9.66 22.22 0.21 -3.66 16 12 C -0.24 -10.81 10.05 22.46 0.23 -10.59 16 13 C -0.12 -5.74 10.02 22.22 0.22 -5.52 16 14 C -0.19 -10.69 8.68 22.73 0.20 -10.49 16 15 C 0.10 5.39 5.56 -21.29 -0.12 5.27 16 16 C -0.48 -26.37 8.15 23.46 0.19 -26.18 16 17 H 0.07 3.68 6.67 -2.91 -0.02 3.66 16 18 C 0.04 1.98 5.16 85.26 0.44 2.42 16 19 N -0.83 -44.31 10.97 21.83 0.24 -44.07 16 20 Si 0.97 40.11 29.59 68.60 2.03 42.14 16 21 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 22 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 23 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 24 C 0.47 11.48 7.32 71.24 0.52 12.00 16 25 O -0.52 -15.01 15.59 21.98 0.34 -14.67 16 26 O -0.35 -7.05 10.37 -51.34 -0.53 -7.58 16 27 C 0.03 0.37 10.56 113.37 1.20 1.56 16 28 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.05 1.49 7.85 -2.39 -0.02 1.48 16 32 H 0.05 1.46 5.64 -2.38 -0.01 1.45 16 33 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.10 1.73 8.00 -2.38 -0.02 1.71 16 35 H 0.41 10.64 7.79 -92.71 -0.72 9.92 16 36 H 0.11 3.41 8.05 -2.39 -0.02 3.39 16 37 H 0.09 3.63 7.07 -2.39 -0.02 3.62 16 38 H 0.12 4.32 8.06 -2.91 -0.02 4.30 16 39 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 40 H 0.10 4.54 8.06 -2.91 -0.02 4.52 16 41 H 0.10 5.53 6.22 -2.91 -0.02 5.51 16 42 H 0.29 13.93 8.30 -92.70 -0.77 13.16 16 43 H 0.14 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.07 0.88 8.13 -2.39 -0.02 0.86 16 45 H 0.06 0.88 8.13 -2.39 -0.02 0.86 16 Total: -1.00 -68.56 373.09 4.94 -63.62 By element: Atomic # 1 Polarization: 37.44 SS G_CDS: 0.28 Total: 37.72 kcal Atomic # 6 Polarization: -34.39 SS G_CDS: 4.81 Total: -29.58 kcal Atomic # 7 Polarization: -65.23 SS G_CDS: -1.95 Total: -67.18 kcal Atomic # 8 Polarization: -46.50 SS G_CDS: -0.23 Total: -46.73 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.14 kcal Total: -68.56 4.94 -63.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777462008.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.885 kcal (2) G-P(sol) polarization free energy of solvation -68.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds