Wall clock time and date at job start Tue Mar 31 2020 13:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.46641 * 2 1 4 4 C 1.53005 * 109.47185 * 119.99519 * 2 1 3 5 5 H 1.09000 * 109.46886 * 293.80973 * 4 2 1 6 6 O 1.45200 * 109.46836 * 53.80882 * 4 2 1 7 7 C 1.34223 * 116.99846 * 210.00393 * 6 4 2 8 8 O 1.20822 * 120.00444 * 359.97438 * 7 6 4 9 9 C 1.50703 * 120.00218 * 180.02562 * 7 6 4 10 10 C 1.52994 * 109.47423 * 179.97438 * 9 7 6 11 11 H 1.09004 * 109.47036 * 54.99913 * 10 9 7 12 12 C 1.50702 * 109.47342 * 294.99966 * 10 9 7 13 13 H 1.08000 * 119.99647 * 335.08179 * 12 10 9 14 14 C 1.37870 * 120.00454 * 155.08547 * 12 10 9 15 15 N 1.31512 * 120.00287 * 185.22881 * 14 12 10 16 16 Si 1.86808 * 119.99637 * 5.22505 * 14 12 10 17 17 H 1.48501 * 109.46992 * 93.38391 * 16 14 12 18 18 H 1.48502 * 109.46677 * 213.37990 * 16 14 12 19 19 H 1.48496 * 109.47339 * 333.37847 * 16 14 12 20 20 C 1.50706 * 109.47230 * 174.99734 * 10 9 7 21 21 C 1.38241 * 119.99498 * 64.96623 * 20 10 9 22 22 C 1.38234 * 119.99570 * 179.78399 * 21 20 10 23 23 C 1.38238 * 120.00063 * 0.44949 * 22 21 20 24 24 C 1.38233 * 119.99647 * 359.80828 * 23 22 21 25 25 C 1.38230 * 120.00550 * 359.97438 * 24 23 22 26 26 C 1.50696 * 109.46876 * 173.80671 * 4 2 1 27 27 N 1.34777 * 119.99895 * 249.37894 * 26 4 2 28 28 O 1.21285 * 119.99939 * 69.38872 * 26 4 2 29 29 H 1.08997 * 109.47941 * 300.00265 * 1 2 3 30 30 H 1.09002 * 109.47321 * 60.00517 * 1 2 3 31 31 H 1.09001 * 109.46949 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.48056 * 240.00279 * 2 1 3 33 33 H 1.09000 * 109.47114 * 183.63256 * 3 2 1 34 34 H 1.08992 * 109.47066 * 303.62917 * 3 2 1 35 35 H 1.08999 * 109.47278 * 63.63335 * 3 2 1 36 36 H 1.08997 * 109.46806 * 299.99895 * 9 7 6 37 37 H 1.09005 * 109.46990 * 59.99387 * 9 7 6 38 38 H 0.97004 * 120.00034 * 180.02562 * 15 14 12 39 39 H 1.07998 * 119.99998 * 0.02562 * 21 20 10 40 40 H 1.07995 * 119.99984 * 180.27060 * 22 21 20 41 41 H 1.07995 * 120.00043 * 179.82627 * 23 22 21 42 42 H 1.08007 * 119.99900 * 180.02562 * 24 23 22 43 43 H 1.07995 * 120.00233 * 180.02562 * 25 24 23 44 44 H 0.97002 * 119.99825 * 4.10148 * 27 26 4 45 45 H 0.97008 * 119.99878 * 184.10336 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.7699 -0.1472 2.1358 6 8 1.4392 -2.0408 1.3255 7 6 1.2497 -2.5542 2.5511 8 8 1.5754 -1.9222 3.5279 9 6 0.6316 -3.9196 2.7089 10 6 0.5294 -4.2645 4.1959 11 1 -0.0176 -3.4772 4.7147 12 6 1.9134 -4.3835 4.7803 13 1 2.7493 -4.6309 4.1428 14 6 2.1125 -4.1766 6.1288 15 7 3.3319 -4.1787 6.6214 16 14 0.6501 -3.8932 7.2561 17 1 0.2205 -5.1874 7.8443 18 1 1.0375 -2.9594 8.3439 19 1 -0.4698 -3.3077 6.4764 20 6 -0.1991 -5.5737 4.3591 21 6 0.3596 -6.7408 3.8724 22 6 -0.3065 -7.9423 4.0260 23 6 -1.5355 -7.9754 4.6580 24 6 -2.0965 -6.8075 5.1399 25 6 -1.4284 -5.6066 4.9903 26 6 3.5391 -0.8553 1.1750 27 7 4.0992 -2.0680 0.9961 28 8 4.2417 0.1282 1.2765 29 1 -0.3635 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5137 -0.8899 33 1 3.1279 1.4434 -0.0651 34 1 1.6244 1.9748 -0.8556 35 1 1.7306 1.9373 0.9207 36 1 -0.3643 -3.9209 2.2659 37 1 1.2537 -4.6603 2.2063 38 1 3.4719 -4.0335 7.5702 39 1 1.3182 -6.7144 3.3757 40 1 0.1319 -8.8547 3.6497 41 1 -2.0572 -8.9136 4.7755 42 1 -3.0565 -6.8333 5.6341 43 1 -1.8665 -4.6943 5.3672 44 1 3.5369 -2.8459 0.8556 45 1 5.0645 -2.1630 1.0078 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795989112.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:27 Heat of formation + Delta-G solvation = -114.197577 kcal Electronic energy + Delta-G solvation = -27559.170312 eV Core-core repulsion = 23734.154040 eV Total energy + Delta-G solvation = -3825.016272 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.63299 -39.11481 -38.56376 -36.55849 -34.92432 -34.26785 -33.35168 -31.81092 -30.31139 -29.44355 -27.77637 -27.15547 -25.99865 -22.92438 -22.01705 -21.61379 -20.85642 -20.02947 -19.31737 -17.90289 -17.49823 -17.05887 -16.61321 -16.05179 -15.82397 -15.13022 -14.86732 -14.66458 -14.41147 -14.23766 -13.95991 -13.55843 -13.21794 -12.94121 -12.82575 -12.68562 -12.54384 -12.30213 -12.20810 -12.10765 -11.89395 -11.58895 -11.41958 -11.18437 -10.97424 -10.87315 -10.77797 -10.61272 -10.48163 -10.06701 -9.78733 -9.64585 -9.61877 -9.46742 -9.23223 -8.58773 -8.31029 -7.93309 -6.10084 -4.08838 1.99123 2.03326 2.64505 2.84571 2.89068 3.32627 3.36022 3.39579 3.59468 4.40278 4.46002 4.62523 4.74418 4.91906 5.03640 5.22372 5.28021 5.43206 5.46576 5.47002 5.53046 5.59021 5.61494 5.77113 5.78803 5.80905 5.83662 5.94602 5.98088 6.12583 6.17521 6.20498 6.29339 6.35406 6.57892 6.68721 6.80512 6.88813 6.90178 7.05327 7.15293 7.42645 7.46205 7.59679 7.70008 8.28514 8.36995 8.41716 8.86974 9.52533 11.02367 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014406 B = 0.004181 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.203675 B = 6694.801380 C = 7448.633284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.080 4.080 3 C -0.152 4.152 4 C 0.076 3.924 5 H 0.116 0.884 6 O -0.363 6.363 7 C 0.451 3.549 8 O -0.459 6.459 9 C -0.084 4.084 10 C 0.044 3.956 11 H 0.058 0.942 12 C -0.495 4.495 13 H 0.073 0.927 14 C 0.085 3.915 15 N -0.892 5.892 16 Si 0.867 3.133 17 H -0.276 1.276 18 H -0.290 1.290 19 H -0.259 1.259 20 C -0.044 4.044 21 C -0.098 4.098 22 C -0.126 4.126 23 C -0.146 4.146 24 C -0.125 4.125 25 C -0.141 4.141 26 C 0.517 3.483 27 N -0.842 5.842 28 O -0.541 6.541 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.263 0.737 39 H 0.122 0.878 40 H 0.112 0.888 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.112 0.888 44 H 0.406 0.594 45 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.747 0.607 -13.568 15.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.099 4.099 3 C -0.210 4.210 4 C 0.017 3.983 5 H 0.134 0.866 6 O -0.282 6.282 7 C 0.291 3.709 8 O -0.340 6.340 9 C -0.122 4.122 10 C 0.025 3.975 11 H 0.076 0.924 12 C -0.532 4.532 13 H 0.091 0.909 14 C -0.118 4.118 15 N -0.529 5.529 16 Si 0.695 3.305 17 H -0.202 1.202 18 H -0.217 1.217 19 H -0.184 1.184 20 C -0.045 4.045 21 C -0.116 4.116 22 C -0.144 4.144 23 C -0.165 4.165 24 C -0.143 4.143 25 C -0.159 4.159 26 C 0.301 3.699 27 N -0.405 5.405 28 O -0.418 6.418 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.102 0.898 37 H 0.115 0.885 38 H 0.073 0.927 39 H 0.140 0.860 40 H 0.130 0.870 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.130 0.870 44 H 0.236 0.764 45 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -7.223 1.594 -12.977 14.937 hybrid contribution -0.401 -0.394 1.054 1.195 sum -7.624 1.200 -11.923 14.203 Atomic orbital electron populations 1.21797 0.93647 1.02868 1.01989 1.21062 0.97158 0.96281 0.95355 1.21933 1.02960 0.93938 1.02131 1.22943 0.88793 0.84241 1.02326 0.86627 1.86596 1.74564 1.32547 1.34493 1.24103 0.76840 0.89511 0.80396 1.90754 1.44469 1.59834 1.38968 1.21413 1.00199 0.89480 1.01126 1.18375 0.97852 0.90691 0.90548 0.92434 1.20589 0.90340 1.48246 0.93995 0.90910 1.24866 0.95169 0.93667 0.98085 1.69879 1.20215 1.49219 1.13618 0.87020 0.84047 0.78422 0.80996 1.20180 1.21671 1.18371 1.20681 0.92000 0.97662 0.94138 1.20985 0.99203 0.91665 0.99777 1.21080 0.95433 0.97721 1.00197 1.20898 0.96707 0.97497 1.01363 1.20975 0.99611 0.93058 1.00642 1.21136 0.95599 0.97604 1.01527 1.20695 0.90701 0.83537 0.74968 1.43777 1.11626 1.10259 1.74867 1.90725 1.63316 1.37449 1.50331 0.92495 0.92152 0.91446 0.90104 0.90739 0.92053 0.92207 0.89762 0.88486 0.92672 0.85997 0.87024 0.87289 0.87243 0.87031 0.76417 0.76729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 8.98 37.16 0.33 -1.12 16 2 C -0.08 -0.91 2.69 -90.62 -0.24 -1.15 16 3 C -0.15 -1.70 8.76 37.16 0.33 -1.38 16 4 C 0.08 1.11 2.04 -27.88 -0.06 1.05 16 5 H 0.12 1.92 7.16 -51.93 -0.37 1.54 16 6 O -0.36 -5.30 7.73 -39.24 -0.30 -5.60 16 7 C 0.45 8.14 7.67 36.01 0.28 8.42 16 8 O -0.46 -10.39 14.20 -18.75 -0.27 -10.66 16 9 C -0.08 -1.43 5.07 -27.88 -0.14 -1.57 16 10 C 0.04 0.94 1.21 -92.92 -0.11 0.83 16 11 H 0.06 1.32 5.20 -51.93 -0.27 1.05 16 12 C -0.49 -12.78 6.88 -34.44 -0.24 -13.02 16 13 H 0.07 2.02 8.05 -52.49 -0.42 1.59 16 14 C 0.09 2.41 5.47 -17.82 -0.10 2.31 16 15 N -0.89 -27.04 13.96 55.43 0.77 -26.27 16 16 Si 0.87 21.79 25.92 -169.99 -4.41 17.39 16 17 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 19 H -0.26 -6.08 5.42 56.52 0.31 -5.78 16 20 C -0.04 -0.86 4.06 -104.62 -0.43 -1.29 16 21 C -0.10 -1.78 8.88 -39.58 -0.35 -2.13 16 22 C -0.13 -2.02 10.05 -39.58 -0.40 -2.41 16 23 C -0.15 -2.25 10.05 -39.58 -0.40 -2.65 16 24 C -0.12 -2.03 10.05 -39.59 -0.40 -2.43 16 25 C -0.14 -2.60 8.44 -39.59 -0.33 -2.93 16 26 C 0.52 8.33 7.28 -10.99 -0.08 8.25 16 27 N -0.84 -11.41 8.80 31.22 0.27 -11.14 16 28 O -0.54 -10.15 15.78 5.55 0.09 -10.06 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.69 7.52 -51.93 -0.39 0.30 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.97 6.24 -51.93 -0.32 0.64 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.10 1.48 7.88 -51.93 -0.41 1.07 16 38 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 39 H 0.12 2.14 7.81 -52.49 -0.41 1.73 16 40 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 41 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 42 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 43 H 0.11 2.01 7.37 -52.49 -0.39 1.63 16 44 H 0.41 4.93 7.69 -40.82 -0.31 4.62 16 45 H 0.40 4.90 8.93 -40.82 -0.36 4.54 16 LS Contribution 368.78 15.07 5.56 5.56 Total: -1.00 -33.12 368.78 -7.32 -40.44 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -6.70 Total: 11.55 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -2.34 Total: -11.21 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 1.05 Total: -37.40 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -0.48 Total: -26.32 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.41 Total: 17.39 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.12 -7.32 -40.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795989112.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.755 kcal (2) G-P(sol) polarization free energy of solvation -33.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds