Wall clock time and date at job start Tue Mar 31 2020 12:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.47030 * 2 1 4 4 C 1.53007 * 109.46918 * 240.00182 * 2 1 3 5 5 C 1.50695 * 109.46908 * 59.99862 * 4 2 1 6 6 H 1.08002 * 120.00544 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99623 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99789 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00010 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47003 * 59.99982 * 9 7 5 11 11 H 1.48500 * 109.47404 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47220 * 300.00085 * 9 7 5 13 13 C 1.52994 * 109.47076 * 120.00190 * 2 1 3 14 14 N 1.46504 * 109.47128 * 300.00062 * 13 2 1 15 15 C 1.34779 * 119.99992 * 180.02562 * 14 13 2 16 16 O 1.21726 * 119.99903 * 359.97438 * 15 14 13 17 17 C 1.46247 * 119.99824 * 179.97438 * 15 14 13 18 18 C 1.34986 * 119.99741 * 173.72975 * 17 15 14 19 19 C 1.46994 * 120.00020 * 346.37033 * 18 17 15 20 20 C 1.39957 * 120.09683 * 317.04832 * 19 18 17 21 21 C 1.37746 * 119.97745 * 179.74512 * 20 19 18 22 22 C 1.38865 * 120.17114 * 0.55633 * 21 20 19 23 23 O 1.35833 * 119.89967 * 179.71854 * 22 21 20 24 24 C 1.39430 * 120.19356 * 359.70077 * 22 21 20 25 25 O 1.36000 * 119.98904 * 180.02562 * 24 22 21 26 26 C 1.38095 * 120.02064 * 0.02562 * 24 22 21 27 27 H 1.09000 * 109.47074 * 299.99736 * 1 2 3 28 28 H 1.09001 * 109.47386 * 59.99960 * 1 2 3 29 29 H 1.08998 * 109.47079 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47263 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47414 * 299.99838 * 3 2 1 32 32 H 1.09005 * 109.47676 * 60.00221 * 3 2 1 33 33 H 1.09003 * 109.46703 * 179.97438 * 4 2 1 34 34 H 1.09005 * 109.46871 * 299.99709 * 4 2 1 35 35 H 0.96998 * 119.99635 * 180.02562 * 8 7 5 36 36 H 1.09003 * 109.47163 * 180.02562 * 13 2 1 37 37 H 1.08998 * 109.47504 * 60.00196 * 13 2 1 38 38 H 0.96990 * 119.99949 * 0.02562 * 14 13 2 39 39 H 1.08000 * 120.00472 * 353.45916 * 17 15 14 40 40 H 1.08000 * 120.00082 * 166.36794 * 18 17 15 41 41 H 1.07997 * 120.01033 * 0.02562 * 20 19 18 42 42 H 1.08000 * 119.91891 * 180.25132 * 21 20 19 43 43 H 0.96701 * 113.99715 * 269.97522 * 23 22 21 44 44 H 0.96697 * 113.99599 * 269.97387 * 25 24 22 45 45 H 1.08000 * 120.08436 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8711 -0.4816 -3.7320 8 7 2.6272 -1.5508 -3.8527 9 14 1.2490 0.3994 -5.2572 10 1 1.7441 1.7995 -5.2567 11 1 1.7449 -0.2999 -6.4698 12 1 -0.2360 0.3995 -5.2577 13 6 2.0400 -0.7213 1.2492 14 7 1.5516 -0.0307 2.4454 15 6 1.8777 -0.4909 3.6695 16 8 2.5775 -1.4806 3.7811 17 6 1.3906 0.1988 4.8636 18 6 1.6096 -0.3312 6.0856 19 6 2.0615 -1.7241 6.2124 20 6 1.4835 -2.7242 5.4220 21 6 1.9125 -4.0279 5.5390 22 6 2.9099 -4.3555 6.4481 23 8 3.3247 -5.6438 6.5630 24 6 3.4869 -3.3658 7.2428 25 8 4.4638 -3.6912 8.1313 26 6 3.0668 -2.0553 7.1280 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 -0.7208 -1.2495 34 1 1.6767 -1.7490 -1.2493 35 1 2.8621 -1.8818 -4.7337 36 1 3.1300 -0.7209 1.2494 37 1 1.6767 -1.7489 1.2492 38 1 0.9937 0.7577 2.3564 39 1 0.8595 1.1344 4.7681 40 1 1.4528 0.2683 6.9702 41 1 0.7045 -2.4730 4.7174 42 1 1.4687 -4.7981 4.9258 43 1 2.8328 -6.1585 7.2173 44 1 4.1342 -3.9267 9.0094 45 1 3.5128 -1.2880 7.7434 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813705765.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:03 Heat of formation + Delta-G solvation = -84.525996 kcal Electronic energy + Delta-G solvation = -26305.440442 eV Core-core repulsion = 22481.710826 eV Total energy + Delta-G solvation = -3823.729615 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.42897 -39.55904 -37.50087 -37.08000 -36.51915 -33.57378 -33.31916 -32.07195 -30.38412 -28.74607 -27.13925 -26.52824 -26.36495 -23.96743 -22.88555 -22.73875 -21.40793 -19.78496 -18.94519 -18.29192 -17.62721 -17.03241 -16.42086 -16.23080 -15.91982 -15.27878 -15.14181 -14.79517 -14.62007 -14.43628 -13.83685 -13.73348 -13.49226 -13.23372 -13.06110 -12.74349 -12.63144 -12.18485 -12.11638 -12.08731 -12.03217 -11.45398 -11.16937 -11.01334 -10.87759 -10.64172 -10.41220 -10.32047 -10.27617 -9.92068 -9.88227 -9.79289 -9.18572 -8.97976 -8.94230 -8.58536 -8.36064 -8.07671 -6.00019 -4.01606 0.48918 1.22203 1.59859 3.31522 3.37151 3.37665 3.38908 3.52455 3.54011 3.92097 3.99409 4.44788 4.55314 4.71288 4.90916 5.09473 5.16193 5.33725 5.35234 5.48935 5.61752 5.63243 5.70203 5.73189 5.81787 5.96081 6.15399 6.16228 6.21072 6.22714 6.29316 6.38254 6.44421 6.55821 6.59433 6.61387 6.76347 7.05006 7.06214 7.11947 7.23829 7.63382 7.65243 7.75923 7.76814 7.98409 8.39457 8.45795 9.03016 9.61450 11.11407 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.021482 B = 0.002484 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.104713 B =11268.843407 C =12081.661118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.128 3.872 14 N -0.714 5.714 15 C 0.527 3.473 16 O -0.532 6.532 17 C -0.201 4.201 18 C -0.034 4.034 19 C -0.057 4.057 20 C -0.030 4.030 21 C -0.139 4.139 22 C 0.089 3.911 23 O -0.488 6.488 24 C 0.064 3.936 25 O -0.488 6.488 26 C -0.112 4.112 27 H 0.029 0.971 28 H 0.067 0.933 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.029 0.971 33 H 0.018 0.982 34 H 0.018 0.982 35 H 0.261 0.739 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.398 0.602 39 H 0.134 0.866 40 H 0.137 0.863 41 H 0.122 0.878 42 H 0.131 0.869 43 H 0.383 0.617 44 H 0.381 0.619 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.519 0.657 25.687 26.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.006 3.994 14 N -0.365 5.365 15 C 0.315 3.685 16 O -0.411 6.411 17 C -0.222 4.222 18 C -0.054 4.054 19 C -0.058 4.058 20 C -0.049 4.049 21 C -0.157 4.157 22 C 0.044 3.956 23 O -0.298 6.298 24 C 0.019 3.981 25 O -0.297 6.297 26 C -0.131 4.131 27 H 0.048 0.952 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.047 0.953 33 H 0.036 0.964 34 H 0.036 0.964 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.233 0.767 39 H 0.151 0.849 40 H 0.154 0.846 41 H 0.140 0.860 42 H 0.149 0.851 43 H 0.238 0.762 44 H 0.235 0.765 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.141 0.101 24.667 25.012 hybrid contribution -1.058 0.644 -0.385 1.297 sum -5.199 0.744 24.282 24.843 Atomic orbital electron populations 1.21759 0.95294 1.01124 1.00212 1.20900 0.95431 0.95842 0.95109 1.21761 1.00566 0.95908 1.00203 1.19084 0.96356 0.95196 0.89477 1.21140 1.31300 1.12081 0.90534 0.92331 1.25018 0.95308 0.95078 0.99084 1.69954 1.36822 1.23002 1.23574 0.86708 0.79119 0.79772 0.82681 1.20333 1.21388 1.20330 1.21621 0.98965 0.95948 0.82911 1.46203 1.52473 1.31853 1.05970 1.18436 0.81564 0.84582 0.83943 1.90918 1.38130 1.25631 1.86466 1.23142 1.03771 1.02386 0.92870 1.22275 0.93187 0.92789 0.97122 1.18737 0.97134 0.93090 0.96812 1.21004 0.98281 0.91385 0.94181 1.21167 0.97374 0.97516 0.99677 1.18919 0.94757 0.84188 0.97723 1.84901 1.61447 1.19948 1.63462 1.18526 0.92727 0.92032 0.94787 1.84971 1.31219 1.89671 1.23812 1.21316 0.96720 0.95449 0.99588 0.95250 0.91448 0.93400 0.93383 0.91443 0.95250 0.96372 0.96375 0.92957 0.91810 0.91808 0.76702 0.84867 0.84567 0.85979 0.85090 0.76173 0.76505 0.85167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 8.05 37.16 0.30 -1.87 16 2 C -0.07 -1.36 0.54 -154.51 -0.08 -1.44 16 3 C -0.13 -2.21 8.05 37.15 0.30 -1.91 16 4 C 0.04 0.89 4.04 -27.88 -0.11 0.78 16 5 C -0.51 -13.58 7.65 -34.44 -0.26 -13.84 16 6 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 9 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 C 0.13 2.25 4.56 -4.04 -0.02 2.23 16 14 N -0.71 -9.99 4.95 -61.76 -0.31 -10.29 16 15 C 0.53 7.48 6.77 -13.04 -0.09 7.39 16 16 O -0.53 -9.51 12.37 5.17 0.06 -9.44 16 17 C -0.20 -2.00 9.87 -37.52 -0.37 -2.37 16 18 C -0.03 -0.31 9.80 -37.19 -0.36 -0.68 16 19 C -0.06 -0.67 4.50 -105.06 -0.47 -1.14 16 20 C -0.03 -0.38 6.68 -39.12 -0.26 -0.64 16 21 C -0.14 -1.76 9.96 -39.53 -0.39 -2.15 16 22 C 0.09 1.12 6.72 -38.91 -0.26 0.86 16 23 O -0.49 -5.56 13.27 -33.89 -0.45 -6.01 16 24 C 0.06 0.77 6.71 -39.19 -0.26 0.51 16 25 O -0.49 -5.22 13.28 -34.42 -0.46 -5.68 16 26 C -0.11 -1.26 9.72 -38.99 -0.38 -1.64 16 27 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 28 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 32 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.40 4.62 6.14 -40.82 -0.25 4.37 16 39 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 40 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 41 H 0.12 1.53 7.08 -52.49 -0.37 1.16 16 42 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 43 H 0.38 2.10 9.06 45.56 0.41 2.51 16 44 H 0.38 1.86 9.06 45.56 0.41 2.27 16 45 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 370.46 15.07 5.58 5.58 Total: -1.00 -35.37 370.46 -7.54 -42.90 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -4.86 Total: 7.01 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -2.83 Total: -14.45 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: 0.43 Total: -36.09 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.84 Total: -21.13 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.37 -7.54 -42.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813705765.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.621 kcal (2) G-P(sol) polarization free energy of solvation -35.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds