Wall clock time and date at job start Tue Mar 31 2020 12:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.47030 * 2 1 4 4 C 1.53007 * 109.46918 * 240.00182 * 2 1 3 5 5 C 1.50695 * 109.46908 * 59.99862 * 4 2 1 6 6 H 1.08002 * 120.00544 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99623 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99789 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00010 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47003 * 59.99982 * 9 7 5 11 11 H 1.48500 * 109.47404 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47220 * 300.00085 * 9 7 5 13 13 C 1.52994 * 109.47076 * 120.00190 * 2 1 3 14 14 N 1.46504 * 109.47128 * 300.00062 * 13 2 1 15 15 C 1.34779 * 119.99992 * 180.02562 * 14 13 2 16 16 O 1.21726 * 119.99903 * 359.97438 * 15 14 13 17 17 C 1.46247 * 119.99824 * 179.97438 * 15 14 13 18 18 C 1.34986 * 119.99741 * 173.72975 * 17 15 14 19 19 C 1.46994 * 120.00020 * 346.37033 * 18 17 15 20 20 C 1.39957 * 120.09683 * 317.04832 * 19 18 17 21 21 C 1.37746 * 119.97745 * 179.74512 * 20 19 18 22 22 C 1.38865 * 120.17114 * 0.55633 * 21 20 19 23 23 O 1.35833 * 119.89967 * 179.71854 * 22 21 20 24 24 C 1.39430 * 120.19356 * 359.70077 * 22 21 20 25 25 O 1.36000 * 119.98904 * 180.02562 * 24 22 21 26 26 C 1.38095 * 120.02064 * 0.02562 * 24 22 21 27 27 H 1.09000 * 109.47074 * 299.99736 * 1 2 3 28 28 H 1.09001 * 109.47386 * 59.99960 * 1 2 3 29 29 H 1.08998 * 109.47079 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47263 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47414 * 299.99838 * 3 2 1 32 32 H 1.09005 * 109.47676 * 60.00221 * 3 2 1 33 33 H 1.09003 * 109.46703 * 179.97438 * 4 2 1 34 34 H 1.09005 * 109.46871 * 299.99709 * 4 2 1 35 35 H 0.96998 * 119.99635 * 180.02562 * 8 7 5 36 36 H 1.09003 * 109.47163 * 180.02562 * 13 2 1 37 37 H 1.08998 * 109.47504 * 60.00196 * 13 2 1 38 38 H 0.96990 * 119.99949 * 0.02562 * 14 13 2 39 39 H 1.08000 * 120.00472 * 353.45916 * 17 15 14 40 40 H 1.08000 * 120.00082 * 166.36794 * 18 17 15 41 41 H 1.07997 * 120.01033 * 0.02562 * 20 19 18 42 42 H 1.08000 * 119.91891 * 180.25132 * 21 20 19 43 43 H 0.96701 * 113.99715 * 269.97522 * 23 22 21 44 44 H 0.96697 * 113.99599 * 269.97387 * 25 24 22 45 45 H 1.08000 * 120.08436 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8711 -0.4816 -3.7320 8 7 2.6272 -1.5508 -3.8527 9 14 1.2490 0.3994 -5.2572 10 1 1.7441 1.7995 -5.2567 11 1 1.7449 -0.2999 -6.4698 12 1 -0.2360 0.3995 -5.2577 13 6 2.0400 -0.7213 1.2492 14 7 1.5516 -0.0307 2.4454 15 6 1.8777 -0.4909 3.6695 16 8 2.5775 -1.4806 3.7811 17 6 1.3906 0.1988 4.8636 18 6 1.6096 -0.3312 6.0856 19 6 2.0615 -1.7241 6.2124 20 6 1.4835 -2.7242 5.4220 21 6 1.9125 -4.0279 5.5390 22 6 2.9099 -4.3555 6.4481 23 8 3.3247 -5.6438 6.5630 24 6 3.4869 -3.3658 7.2428 25 8 4.4638 -3.6912 8.1313 26 6 3.0668 -2.0553 7.1280 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 -0.7208 -1.2495 34 1 1.6767 -1.7490 -1.2493 35 1 2.8621 -1.8818 -4.7337 36 1 3.1300 -0.7209 1.2494 37 1 1.6767 -1.7489 1.2492 38 1 0.9937 0.7577 2.3564 39 1 0.8595 1.1344 4.7681 40 1 1.4528 0.2683 6.9702 41 1 0.7045 -2.4730 4.7174 42 1 1.4687 -4.7981 4.9258 43 1 2.8328 -6.1585 7.2173 44 1 4.1342 -3.9267 9.0094 45 1 3.5128 -1.2880 7.7434 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813705765.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:02 Heat of formation + Delta-G solvation = -111.126186 kcal Electronic energy + Delta-G solvation = -26306.593913 eV Core-core repulsion = 22481.710826 eV Total energy + Delta-G solvation = -3824.883086 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.36514 -40.63537 -38.84747 -37.91902 -37.55173 -35.18665 -34.19459 -33.83184 -31.25522 -29.73752 -29.01747 -27.95619 -27.69926 -25.36719 -24.19747 -23.74446 -22.49297 -20.84541 -19.90247 -19.55128 -18.68849 -18.36951 -17.95739 -17.21854 -16.93701 -16.52396 -16.30269 -16.29521 -15.77254 -15.59992 -15.04689 -14.74343 -14.70401 -14.56375 -14.32346 -14.05946 -13.93654 -13.72754 -13.44972 -13.00964 -12.90310 -12.83057 -12.75459 -12.57753 -12.32913 -12.28974 -12.22015 -12.00545 -11.53239 -11.17080 -11.11551 -10.90007 -10.74692 -10.68458 -10.51635 -10.06240 -9.64667 -8.96020 -8.14537 -6.22887 -0.33729 0.34333 0.76424 1.41871 1.44255 1.51493 2.34282 2.39891 2.47111 2.68842 3.12994 3.19711 3.24896 3.79506 3.88913 3.95855 4.08169 4.08951 4.21263 4.23470 4.46113 4.55830 4.69544 4.72888 4.78959 4.87180 4.89930 4.97195 5.03312 5.11417 5.12693 5.21065 5.33496 5.35013 5.41806 5.49005 5.49886 5.54172 5.58559 5.63297 5.79198 5.80198 5.89214 6.29500 6.64288 6.70967 6.92588 6.97768 7.38544 7.45113 8.97942 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.021482 B = 0.002484 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.104713 B =11268.843407 C =12081.661118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.064 4.064 3 C -0.121 4.121 4 C 0.039 3.961 5 C -0.514 4.514 6 H 0.074 0.926 7 C -0.007 4.007 8 N -0.940 5.940 9 Si 0.960 3.040 10 H -0.266 1.266 11 H -0.292 1.292 12 H -0.265 1.265 13 C 0.145 3.855 14 N -0.704 5.704 15 C 0.521 3.479 16 O -0.576 6.576 17 C -0.206 4.206 18 C -0.019 4.019 19 C -0.068 4.068 20 C -0.044 4.044 21 C -0.158 4.158 22 C 0.075 3.925 23 O -0.504 6.504 24 C 0.058 3.942 25 O -0.501 6.501 26 C -0.115 4.115 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.035 0.965 30 H 0.033 0.967 31 H 0.055 0.945 32 H 0.073 0.927 33 H -0.018 1.018 34 H -0.017 1.017 35 H 0.259 0.741 36 H 0.038 0.962 37 H 0.042 0.958 38 H 0.413 0.587 39 H 0.176 0.824 40 H 0.183 0.817 41 H 0.116 0.884 42 H 0.129 0.871 43 H 0.406 0.594 44 H 0.405 0.595 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.139 3.708 27.816 28.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.064 4.064 3 C -0.179 4.179 4 C 0.002 3.998 5 C -0.552 4.552 6 H 0.092 0.908 7 C -0.204 4.204 8 N -0.581 5.581 9 Si 0.785 3.215 10 H -0.191 1.191 11 H -0.218 1.218 12 H -0.190 1.190 13 C 0.020 3.980 14 N -0.356 5.356 15 C 0.311 3.689 16 O -0.458 6.458 17 C -0.226 4.226 18 C -0.038 4.038 19 C -0.069 4.069 20 C -0.063 4.063 21 C -0.176 4.176 22 C 0.030 3.970 23 O -0.317 6.317 24 C 0.013 3.987 25 O -0.313 6.313 26 C -0.133 4.133 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.000 1.000 34 H 0.002 0.998 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.252 0.748 39 H 0.193 0.807 40 H 0.200 0.800 41 H 0.134 0.866 42 H 0.147 0.853 43 H 0.265 0.735 44 H 0.263 0.737 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.805 3.179 26.844 27.648 hybrid contribution -0.493 -0.433 -0.932 1.140 sum -6.299 2.746 25.912 26.807 Atomic orbital electron populations 1.21687 0.93387 1.00907 1.01792 1.20693 0.96813 0.96243 0.92680 1.21694 0.99721 0.94651 1.01797 1.18974 0.94063 0.94155 0.92617 1.21569 1.30484 1.12110 0.91023 0.90790 1.25987 0.95654 0.95867 1.02847 1.70126 1.38785 1.25065 1.24163 0.85576 0.79015 0.78737 0.78182 1.19077 1.21783 1.18985 1.21114 0.97363 0.95252 0.84267 1.45962 1.52690 1.32124 1.04846 1.19252 0.80693 0.84015 0.84903 1.90916 1.40141 1.27713 1.87064 1.23214 1.04999 1.03756 0.90647 1.22719 0.91011 0.91514 0.98566 1.19089 0.97069 0.94419 0.96279 1.21063 0.98717 0.91852 0.94636 1.21297 0.98146 0.97942 1.00264 1.19060 0.95031 0.84824 0.98105 1.84826 1.62217 1.19968 1.64709 1.18672 0.92597 0.92375 0.95049 1.84896 1.31407 1.89739 1.25260 1.21593 0.96463 0.95660 0.99630 0.90799 0.92602 0.94600 0.94791 0.92560 0.90813 0.99977 0.99816 0.93187 0.94313 0.93925 0.74831 0.80666 0.79951 0.86631 0.85292 0.73534 0.73660 0.82758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.95 8.05 71.98 0.58 -3.37 16 2 C -0.06 -2.40 0.54 -52.18 -0.03 -2.43 16 3 C -0.12 -4.04 8.05 71.98 0.58 -3.46 16 4 C 0.04 2.04 4.04 29.85 0.12 2.16 16 5 C -0.51 -27.69 7.65 25.60 0.20 -27.50 16 6 H 0.07 3.69 5.68 -2.91 -0.02 3.68 16 7 C -0.01 -0.39 5.46 84.66 0.46 0.08 16 8 N -0.94 -58.01 13.29 21.45 0.28 -57.72 16 9 Si 0.96 43.76 29.54 68.60 2.03 45.78 16 10 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 11 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 12 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 13 C 0.14 5.19 4.56 86.38 0.39 5.59 16 14 N -0.70 -18.45 4.95 -467.50 -2.32 -20.77 16 15 C 0.52 13.99 6.77 86.32 0.58 14.57 16 16 O -0.58 -20.78 12.37 -4.43 -0.05 -20.84 16 17 C -0.21 -3.31 9.87 23.60 0.23 -3.07 16 18 C -0.02 -0.27 9.80 23.82 0.23 -0.04 16 19 C -0.07 -1.47 4.50 -20.15 -0.09 -1.56 16 20 C -0.04 -1.13 6.68 22.57 0.15 -0.98 16 21 C -0.16 -4.18 9.96 22.30 0.22 -3.96 16 22 C 0.07 1.91 6.72 22.71 0.15 2.06 16 23 O -0.50 -11.66 13.27 -77.64 -1.03 -12.69 16 24 C 0.06 1.35 6.71 22.52 0.15 1.50 16 25 O -0.50 -10.07 13.28 -79.53 -1.06 -11.13 16 26 C -0.12 -2.38 9.72 22.65 0.22 -2.16 16 27 H 0.07 1.76 6.86 -2.39 -0.02 1.74 16 28 H 0.05 1.97 6.62 -2.39 -0.02 1.95 16 29 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.06 2.00 6.62 -2.39 -0.02 1.99 16 32 H 0.07 1.79 6.86 -2.38 -0.02 1.77 16 33 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 34 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 35 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 36 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.41 8.01 6.14 -92.72 -0.57 7.44 16 39 H 0.18 1.33 8.06 -2.91 -0.02 1.31 16 40 H 0.18 0.96 8.06 -2.91 -0.02 0.94 16 41 H 0.12 2.97 7.08 -2.91 -0.02 2.95 16 42 H 0.13 3.24 8.06 -2.91 -0.02 3.22 16 43 H 0.41 4.43 9.06 -74.06 -0.67 3.76 16 44 H 0.41 3.27 9.06 -74.06 -0.67 2.60 16 45 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -81.66 370.46 1.14 -80.51 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -0.87 Total: 19.42 kcal Atomic # 6 Polarization: -26.73 SS G_CDS: 4.16 Total: -22.57 kcal Atomic # 7 Polarization: -76.46 SS G_CDS: -2.03 Total: -78.49 kcal Atomic # 8 Polarization: -42.51 SS G_CDS: -2.14 Total: -44.65 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Total: -81.66 1.14 -80.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813705765.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.611 kcal (2) G-P(sol) polarization free energy of solvation -81.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds