Wall clock time and date at job start Tue Mar 31 2020 13:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.46877 * 2 1 4 4 C 1.50699 * 109.47206 * 239.99739 * 2 1 3 5 5 H 1.07996 * 119.99977 * 241.34111 * 4 2 1 6 6 C 1.37880 * 120.00206 * 61.34771 * 4 2 1 7 7 N 1.31507 * 120.00262 * 193.97873 * 6 4 2 8 8 Si 1.86803 * 119.99794 * 13.97520 * 6 4 2 9 9 H 1.48498 * 109.47466 * 84.54700 * 8 6 4 10 10 H 1.48497 * 109.47162 * 204.55171 * 8 6 4 11 11 H 1.48503 * 109.47001 * 324.54914 * 8 6 4 12 12 C 1.52997 * 109.47114 * 119.99726 * 2 1 3 13 13 N 1.46501 * 109.47236 * 300.00071 * 12 2 1 14 14 C 1.34780 * 119.99922 * 180.02562 * 13 12 2 15 15 O 1.21280 * 120.00243 * 359.97438 * 14 13 12 16 16 C 1.50704 * 119.99565 * 180.02562 * 14 13 12 17 17 C 1.53001 * 109.46640 * 179.97438 * 16 14 13 18 18 O 1.42897 * 109.47085 * 179.97438 * 17 16 14 19 19 C 1.35914 * 117.00344 * 179.97438 * 18 17 16 20 20 C 1.38890 * 119.96650 * 359.71997 * 19 18 17 21 21 C 1.38294 * 120.29190 * 179.76080 * 20 19 18 22 22 C 1.37938 * 120.23332 * 0.51925 * 21 20 19 23 23 C 1.39832 * 119.93594 * 359.74087 * 22 21 20 24 24 C 1.47187 * 120.14578 * 180.02562 * 23 22 21 25 25 O 1.21252 * 120.00201 * 179.97438 * 24 23 22 26 26 C 1.38384 * 119.97214 * 179.97438 * 19 18 17 27 27 H 1.08994 * 109.47416 * 309.36899 * 1 2 3 28 28 H 1.09006 * 109.47295 * 69.37264 * 1 2 3 29 29 H 1.09004 * 109.47144 * 189.36979 * 1 2 3 30 30 H 1.09008 * 109.47289 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46855 * 299.99505 * 3 2 1 32 32 H 1.08995 * 109.47654 * 59.99998 * 3 2 1 33 33 H 0.96999 * 119.99929 * 180.02562 * 7 6 4 34 34 H 1.09007 * 109.47252 * 180.02562 * 12 2 1 35 35 H 1.09000 * 109.47504 * 60.00209 * 12 2 1 36 36 H 0.97004 * 119.99859 * 0.02562 * 13 12 2 37 37 H 1.08997 * 109.47259 * 59.99613 * 16 14 13 38 38 H 1.09001 * 109.46645 * 299.99420 * 16 14 13 39 39 H 1.08997 * 109.47563 * 59.99858 * 17 16 14 40 40 H 1.09001 * 109.47176 * 299.99154 * 17 16 14 41 41 H 1.08001 * 119.85627 * 0.02562 * 20 19 18 42 42 H 1.07995 * 119.88597 * 180.25644 * 21 20 19 43 43 H 1.07996 * 120.03029 * 179.75822 * 22 21 20 44 44 H 1.08003 * 119.99641 * 359.97438 * 24 23 22 45 45 H 1.08004 * 120.11559 * 359.95002 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6352 -1.6010 -1.1314 6 6 1.7224 -0.2235 -2.4826 7 7 1.9158 -0.9727 -3.5459 8 14 1.0276 1.5005 -2.6685 9 1 2.1416 2.4816 -2.7084 10 1 0.2470 1.5863 -3.9288 11 1 0.1417 1.8042 -1.5160 12 6 2.0400 -0.7212 1.2492 13 7 1.5516 -0.0305 2.4454 14 6 1.8777 -0.4907 3.6695 15 8 2.5749 -1.4767 3.7809 16 6 1.3748 0.2195 4.9000 17 6 1.8849 -0.5017 6.1492 18 8 1.4087 0.1720 7.3160 19 6 1.7735 -0.3446 8.5190 20 6 2.5696 -1.4814 8.5731 21 6 2.9488 -2.0099 9.7935 22 6 2.5303 -1.4180 10.9670 23 6 1.7241 -0.2763 10.9238 24 6 1.2754 0.3595 12.1731 25 8 0.5768 1.3497 12.1326 26 6 1.3471 0.2594 9.6887 27 1 -0.3634 0.6518 0.7944 28 1 -0.3634 0.3620 -0.9618 29 1 -0.3634 -1.0140 0.1673 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9562 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6980 -0.6299 -4.4268 34 1 3.1300 -0.7208 1.2495 35 1 1.6767 -1.7489 1.2493 36 1 0.9936 0.7579 2.3564 37 1 0.2848 0.2187 4.9000 38 1 1.7375 1.2474 4.8998 39 1 2.9749 -0.5013 6.1494 40 1 1.5219 -1.5294 6.1491 41 1 2.8974 -1.9523 7.6582 42 1 3.5714 -2.8917 9.8280 43 1 2.8252 -1.8357 11.9183 44 1 1.5684 -0.0561 13.1260 45 1 0.7252 1.1415 9.6477 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837889559.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:59 Heat of formation + Delta-G solvation = -74.436457 kcal Electronic energy + Delta-G solvation = -25441.963927 eV Core-core repulsion = 21618.671827 eV Total energy + Delta-G solvation = -3823.292100 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.69416 -39.71051 -39.19846 -37.50087 -36.81158 -33.44127 -32.45362 -31.67565 -31.48290 -30.14369 -26.58151 -26.39634 -25.53142 -24.99108 -23.69488 -22.78346 -21.08367 -20.17350 -19.23726 -18.65267 -17.07440 -16.77547 -16.63813 -16.33145 -16.12362 -15.72463 -15.44007 -15.18881 -15.11270 -14.94554 -14.62780 -14.15111 -13.71408 -13.65973 -13.37749 -13.03212 -12.88744 -12.64185 -12.46129 -12.28264 -12.16321 -12.09866 -12.08008 -11.35698 -11.28962 -11.04418 -10.50423 -10.38677 -10.28064 -10.22856 -10.12699 -9.73787 -9.47121 -9.17982 -8.74255 -8.67401 -8.63939 -8.50564 -6.19413 -4.17103 0.19024 0.99571 2.02680 2.60668 2.77100 3.20070 3.27077 3.35248 3.38197 3.62560 3.87392 4.31004 4.33047 4.50398 4.56739 4.64429 4.71562 4.77582 4.94497 4.98365 5.11095 5.18036 5.25786 5.46711 5.49102 5.52668 5.70128 5.79043 5.87923 5.94646 5.97955 5.98846 6.22873 6.29105 6.39867 6.45094 6.55467 6.62622 6.67321 6.88216 6.95402 7.02452 7.14967 7.36201 7.66198 7.77144 8.36340 8.43877 8.85546 9.44185 10.93545 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.035377 B = 0.001918 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.284192 B =14593.858557 C =15167.514130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.028 3.972 3 C -0.148 4.148 4 C -0.514 4.514 5 H 0.076 0.924 6 C 0.075 3.925 7 N -0.890 5.890 8 Si 0.886 3.114 9 H -0.286 1.286 10 H -0.305 1.305 11 H -0.249 1.249 12 C 0.141 3.859 13 N -0.718 5.718 14 C 0.512 3.488 15 O -0.551 6.551 16 C -0.142 4.142 17 C 0.075 3.925 18 O -0.316 6.316 19 C 0.123 3.877 20 C -0.174 4.174 21 C -0.093 4.093 22 C -0.110 4.110 23 C -0.159 4.159 24 C 0.384 3.616 25 O -0.457 6.457 26 C -0.096 4.096 27 H 0.022 0.978 28 H 0.057 0.943 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.042 0.958 32 H 0.029 0.971 33 H 0.265 0.735 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.399 0.601 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.138 0.862 42 H 0.133 0.867 43 H 0.133 0.867 44 H 0.110 0.890 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.535 1.599 28.027 28.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.026 3.974 3 C -0.205 4.205 4 C -0.552 4.552 5 H 0.095 0.905 6 C -0.128 4.128 7 N -0.526 5.526 8 Si 0.718 3.282 9 H -0.213 1.213 10 H -0.234 1.234 11 H -0.175 1.175 12 C 0.019 3.981 13 N -0.369 5.369 14 C 0.297 3.703 15 O -0.429 6.429 16 C -0.182 4.182 17 C 0.000 4.000 18 O -0.229 6.229 19 C 0.078 3.922 20 C -0.193 4.193 21 C -0.111 4.111 22 C -0.128 4.128 23 C -0.160 4.160 24 C 0.242 3.758 25 O -0.329 6.329 26 C -0.114 4.114 27 H 0.041 0.959 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.233 0.767 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.156 0.844 42 H 0.151 0.849 43 H 0.151 0.849 44 H 0.126 0.874 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.540 1.562 27.790 27.839 hybrid contribution -0.330 1.020 -0.620 1.238 sum -0.870 2.582 27.170 27.306 Atomic orbital electron populations 1.22302 0.97793 0.99852 1.00047 1.18731 0.92561 0.92291 0.93770 1.22366 1.01220 0.98281 0.98637 1.20694 1.34188 1.12362 0.87953 0.90547 1.24980 0.94663 0.97322 0.95800 1.69945 1.48029 1.35895 0.98742 0.87291 0.79340 0.85504 0.76041 1.21344 1.23351 1.17539 1.21554 0.98683 0.95860 0.81986 1.46292 1.52652 1.31891 1.06050 1.20130 0.80809 0.84705 0.84657 1.90705 1.38597 1.26640 1.86997 1.21493 1.03784 1.01537 0.91428 1.22498 0.99652 0.96153 0.81715 1.86012 1.71083 1.53678 1.12156 1.18879 0.94876 0.92852 0.85635 1.21692 1.00629 0.96955 1.00038 1.20966 0.98948 0.99699 0.91507 1.21276 0.97564 0.95033 0.98951 1.20728 1.01819 0.98268 0.95154 1.24104 0.76405 0.82678 0.92609 1.90545 1.28685 1.23078 1.90621 1.20674 1.00842 1.00909 0.89007 0.95915 0.92467 0.93383 0.92764 0.93984 0.95157 0.92513 0.91848 0.91739 0.76652 0.87820 0.87837 0.90837 0.90819 0.84449 0.84940 0.84870 0.87425 0.84177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 7.53 37.16 0.28 -2.52 16 2 C 0.03 0.58 0.50 -155.67 -0.08 0.50 16 3 C -0.15 -2.89 7.52 37.16 0.28 -2.61 16 4 C -0.51 -13.49 8.62 -34.44 -0.30 -13.79 16 5 H 0.08 2.21 7.99 -52.49 -0.42 1.79 16 6 C 0.08 2.06 5.32 -17.82 -0.09 1.96 16 7 N -0.89 -26.22 13.96 55.43 0.77 -25.44 16 8 Si 0.89 20.72 22.79 -169.99 -3.87 16.85 16 9 H -0.29 -6.68 7.10 56.52 0.40 -6.27 16 10 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 11 H -0.25 -5.28 4.65 56.52 0.26 -5.01 16 12 C 0.14 2.69 4.49 -4.04 -0.02 2.67 16 13 N -0.72 -10.79 5.00 -60.29 -0.30 -11.09 16 14 C 0.51 7.40 7.83 -10.98 -0.09 7.31 16 15 O -0.55 -9.95 15.98 5.56 0.09 -9.86 16 16 C -0.14 -1.47 6.07 -27.88 -0.17 -1.64 16 17 C 0.08 0.79 4.03 37.16 0.15 0.94 16 18 O -0.32 -3.47 10.13 -19.47 -0.20 -3.67 16 19 C 0.12 1.27 6.68 -39.29 -0.26 1.00 16 20 C -0.17 -1.54 9.03 -39.32 -0.36 -1.89 16 21 C -0.09 -0.64 10.02 -39.67 -0.40 -1.03 16 22 C -0.11 -0.65 9.79 -39.10 -0.38 -1.04 16 23 C -0.16 -1.22 5.87 -105.08 -0.62 -1.84 16 24 C 0.38 2.57 11.46 34.36 0.39 2.96 16 25 O -0.46 -4.98 17.16 5.58 0.10 -4.88 16 26 C -0.10 -0.94 9.54 -38.94 -0.37 -1.31 16 27 H 0.02 0.36 7.13 -51.93 -0.37 -0.01 16 28 H 0.06 1.21 4.30 -51.93 -0.22 0.98 16 29 H 0.05 0.93 8.12 -51.93 -0.42 0.51 16 30 H 0.05 1.06 8.14 -51.92 -0.42 0.64 16 31 H 0.04 0.88 2.25 -51.93 -0.12 0.76 16 32 H 0.03 0.48 6.86 -51.93 -0.36 0.12 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.40 5.12 6.26 -40.82 -0.26 4.86 16 37 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 0.79 7.63 -51.93 -0.40 0.39 16 40 H 0.07 0.79 7.60 -51.93 -0.39 0.39 16 41 H 0.14 1.15 6.28 -52.49 -0.33 0.82 16 42 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 43 H 0.13 0.35 8.06 -52.49 -0.42 -0.07 16 44 H 0.11 0.25 8.06 -52.48 -0.42 -0.18 16 45 H 0.14 1.44 7.65 -52.48 -0.40 1.04 16 LS Contribution 363.44 15.07 5.48 5.48 Total: -1.00 -32.85 363.44 -6.31 -39.15 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -6.34 Total: 3.78 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -2.03 Total: -10.31 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.47 Total: -36.53 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.01 Total: -18.41 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -3.87 Total: 16.85 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.85 -6.31 -39.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837889559.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.283 kcal (2) G-P(sol) polarization free energy of solvation -32.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds