Wall clock time and date at job start Tue Mar 31 2020 13:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.46877 * 2 1 4 4 C 1.50699 * 109.47206 * 239.99739 * 2 1 3 5 5 H 1.07996 * 119.99977 * 241.34111 * 4 2 1 6 6 C 1.37880 * 120.00206 * 61.34771 * 4 2 1 7 7 N 1.31507 * 120.00262 * 193.97873 * 6 4 2 8 8 Si 1.86803 * 119.99794 * 13.97520 * 6 4 2 9 9 H 1.48498 * 109.47466 * 84.54700 * 8 6 4 10 10 H 1.48497 * 109.47162 * 204.55171 * 8 6 4 11 11 H 1.48503 * 109.47001 * 324.54914 * 8 6 4 12 12 C 1.52997 * 109.47114 * 119.99726 * 2 1 3 13 13 N 1.46501 * 109.47236 * 300.00071 * 12 2 1 14 14 C 1.34780 * 119.99922 * 180.02562 * 13 12 2 15 15 O 1.21280 * 120.00243 * 359.97438 * 14 13 12 16 16 C 1.50704 * 119.99565 * 180.02562 * 14 13 12 17 17 C 1.53001 * 109.46640 * 179.97438 * 16 14 13 18 18 O 1.42897 * 109.47085 * 179.97438 * 17 16 14 19 19 C 1.35914 * 117.00344 * 179.97438 * 18 17 16 20 20 C 1.38890 * 119.96650 * 359.71997 * 19 18 17 21 21 C 1.38294 * 120.29190 * 179.76080 * 20 19 18 22 22 C 1.37938 * 120.23332 * 0.51925 * 21 20 19 23 23 C 1.39832 * 119.93594 * 359.74087 * 22 21 20 24 24 C 1.47187 * 120.14578 * 180.02562 * 23 22 21 25 25 O 1.21252 * 120.00201 * 179.97438 * 24 23 22 26 26 C 1.38384 * 119.97214 * 179.97438 * 19 18 17 27 27 H 1.08994 * 109.47416 * 309.36899 * 1 2 3 28 28 H 1.09006 * 109.47295 * 69.37264 * 1 2 3 29 29 H 1.09004 * 109.47144 * 189.36979 * 1 2 3 30 30 H 1.09008 * 109.47289 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46855 * 299.99505 * 3 2 1 32 32 H 1.08995 * 109.47654 * 59.99998 * 3 2 1 33 33 H 0.96999 * 119.99929 * 180.02562 * 7 6 4 34 34 H 1.09007 * 109.47252 * 180.02562 * 12 2 1 35 35 H 1.09000 * 109.47504 * 60.00209 * 12 2 1 36 36 H 0.97004 * 119.99859 * 0.02562 * 13 12 2 37 37 H 1.08997 * 109.47259 * 59.99613 * 16 14 13 38 38 H 1.09001 * 109.46645 * 299.99420 * 16 14 13 39 39 H 1.08997 * 109.47563 * 59.99858 * 17 16 14 40 40 H 1.09001 * 109.47176 * 299.99154 * 17 16 14 41 41 H 1.08001 * 119.85627 * 0.02562 * 20 19 18 42 42 H 1.07995 * 119.88597 * 180.25644 * 21 20 19 43 43 H 1.07996 * 120.03029 * 179.75822 * 22 21 20 44 44 H 1.08003 * 119.99641 * 359.97438 * 24 23 22 45 45 H 1.08004 * 120.11559 * 359.95002 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6352 -1.6010 -1.1314 6 6 1.7224 -0.2235 -2.4826 7 7 1.9158 -0.9727 -3.5459 8 14 1.0276 1.5005 -2.6685 9 1 2.1416 2.4816 -2.7084 10 1 0.2470 1.5863 -3.9288 11 1 0.1417 1.8042 -1.5160 12 6 2.0400 -0.7212 1.2492 13 7 1.5516 -0.0305 2.4454 14 6 1.8777 -0.4907 3.6695 15 8 2.5749 -1.4767 3.7809 16 6 1.3748 0.2195 4.9000 17 6 1.8849 -0.5017 6.1492 18 8 1.4087 0.1720 7.3160 19 6 1.7735 -0.3446 8.5190 20 6 2.5696 -1.4814 8.5731 21 6 2.9488 -2.0099 9.7935 22 6 2.5303 -1.4180 10.9670 23 6 1.7241 -0.2763 10.9238 24 6 1.2754 0.3595 12.1731 25 8 0.5768 1.3497 12.1326 26 6 1.3471 0.2594 9.6887 27 1 -0.3634 0.6518 0.7944 28 1 -0.3634 0.3620 -0.9618 29 1 -0.3634 -1.0140 0.1673 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9562 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6980 -0.6299 -4.4268 34 1 3.1300 -0.7208 1.2495 35 1 1.6767 -1.7489 1.2493 36 1 0.9936 0.7579 2.3564 37 1 0.2848 0.2187 4.9000 38 1 1.7375 1.2474 4.8998 39 1 2.9749 -0.5013 6.1494 40 1 1.5219 -1.5294 6.1491 41 1 2.8974 -1.9523 7.6582 42 1 3.5714 -2.8917 9.8280 43 1 2.8252 -1.8357 11.9183 44 1 1.5684 -0.0561 13.1260 45 1 0.7252 1.1415 9.6477 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837889559.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:58 Heat of formation + Delta-G solvation = -97.707530 kcal Electronic energy + Delta-G solvation = -25442.973036 eV Core-core repulsion = 21618.671827 eV Total energy + Delta-G solvation = -3824.301210 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.40532 -40.83264 -39.95067 -38.51276 -38.05279 -35.02295 -33.64364 -33.05635 -32.25372 -30.84631 -28.05230 -27.81129 -27.02978 -26.15208 -24.68209 -23.38224 -21.81006 -21.29934 -20.91341 -19.41572 -18.26650 -17.89570 -17.49686 -17.44442 -17.13077 -16.86475 -16.67164 -16.28189 -16.11913 -15.90996 -15.34549 -15.05380 -14.92032 -14.77938 -14.68989 -14.34167 -14.19524 -14.00323 -13.92100 -13.75599 -13.11449 -13.02721 -12.78155 -12.69688 -12.40037 -12.16557 -11.97599 -11.96122 -11.80505 -11.76671 -11.13696 -10.94917 -10.83070 -10.62327 -10.39654 -10.08404 -10.02774 -9.29379 -8.30755 -6.32375 -0.39055 0.40039 1.36465 1.37363 1.49202 1.50604 1.61102 1.74562 2.34184 2.57837 2.80182 3.05478 3.36199 3.59186 3.79625 3.91219 3.97068 4.04004 4.09657 4.12454 4.25029 4.32228 4.37644 4.41457 4.43338 4.68160 4.70123 4.75335 4.78348 4.83552 4.86240 4.90528 4.94548 5.06482 5.17479 5.23375 5.27737 5.38820 5.41864 5.53409 5.68087 5.71400 5.79281 6.29221 6.30001 6.48044 6.58959 6.72428 7.24990 7.32519 8.86262 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.035377 B = 0.001918 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.284192 B =14593.858557 C =15167.514130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.026 3.974 3 C -0.148 4.148 4 C -0.517 4.517 5 H 0.027 0.973 6 C 0.015 3.985 7 N -0.946 5.946 8 Si 0.945 3.055 9 H -0.283 1.283 10 H -0.317 1.317 11 H -0.203 1.203 12 C 0.157 3.843 13 N -0.708 5.708 14 C 0.513 3.487 15 O -0.591 6.591 16 C -0.129 4.129 17 C 0.078 3.922 18 O -0.326 6.326 19 C 0.097 3.903 20 C -0.185 4.185 21 C -0.096 4.096 22 C -0.091 4.091 23 C -0.169 4.169 24 C 0.394 3.606 25 O -0.506 6.506 26 C -0.118 4.118 27 H 0.068 0.932 28 H 0.044 0.956 29 H 0.040 0.960 30 H 0.046 0.954 31 H 0.034 0.966 32 H 0.076 0.924 33 H 0.264 0.736 34 H 0.044 0.956 35 H 0.042 0.958 36 H 0.414 0.586 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.135 0.865 42 H 0.159 0.841 43 H 0.178 0.822 44 H 0.167 0.833 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.344 3.213 31.694 31.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.024 3.976 3 C -0.204 4.204 4 C -0.555 4.555 5 H 0.046 0.954 6 C -0.183 4.183 7 N -0.585 5.585 8 Si 0.774 3.226 9 H -0.210 1.210 10 H -0.246 1.246 11 H -0.126 1.126 12 C 0.033 3.967 13 N -0.361 5.361 14 C 0.301 3.699 15 O -0.472 6.472 16 C -0.169 4.169 17 C 0.003 3.997 18 O -0.240 6.240 19 C 0.053 3.947 20 C -0.204 4.204 21 C -0.114 4.114 22 C -0.109 4.109 23 C -0.170 4.170 24 C 0.255 3.745 25 O -0.382 6.382 26 C -0.137 4.137 27 H 0.087 0.913 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.252 0.748 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.153 0.847 42 H 0.177 0.823 43 H 0.195 0.805 44 H 0.182 0.818 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.361 3.192 31.511 31.701 hybrid contribution 0.038 0.324 -1.653 1.685 sum -1.323 3.516 29.858 30.093 Atomic orbital electron populations 1.22224 0.95994 1.00689 1.00965 1.18676 0.93852 0.93166 0.91864 1.22301 1.00998 0.96765 1.00383 1.21029 1.32860 1.11062 0.90574 0.95441 1.25882 0.95463 1.01644 0.95281 1.70112 1.50712 1.38280 0.99399 0.86334 0.79390 0.79876 0.76977 1.21006 1.24638 1.12617 1.21039 0.97427 0.95018 0.83227 1.46025 1.52896 1.32160 1.04980 1.20803 0.79670 0.84061 0.85371 1.90698 1.40338 1.28603 1.87536 1.21416 1.05008 1.01807 0.88643 1.22393 0.99279 0.95950 0.82081 1.85963 1.71531 1.54044 1.12476 1.19080 0.96327 0.93968 0.85373 1.21834 1.00716 0.96729 1.01122 1.21372 0.98712 1.00315 0.90987 1.21741 0.95258 0.93416 1.00482 1.21090 1.02035 0.98972 0.94910 1.24877 0.74486 0.81302 0.93848 1.90544 1.31098 1.25409 1.91113 1.20758 1.01699 1.01086 0.90145 0.91318 0.93741 0.94057 0.93491 0.94792 0.90508 0.92720 0.93804 0.94004 0.74783 0.85481 0.85429 0.91502 0.91520 0.84741 0.82337 0.80500 0.81758 0.85809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.14 7.53 71.98 0.54 -4.60 16 2 C 0.03 1.05 0.50 -52.93 -0.03 1.02 16 3 C -0.15 -5.29 7.52 71.98 0.54 -4.75 16 4 C -0.52 -28.06 8.62 25.60 0.22 -27.84 16 5 H 0.03 1.70 7.99 -2.91 -0.02 1.68 16 6 C 0.01 0.82 5.32 84.66 0.45 1.28 16 7 N -0.95 -58.30 13.96 21.45 0.30 -58.00 16 8 Si 0.94 42.18 22.79 68.60 1.56 43.74 16 9 H -0.28 -12.40 7.10 99.48 0.71 -11.70 16 10 H -0.32 -14.68 7.11 99.48 0.71 -13.98 16 11 H -0.20 -7.54 4.65 99.48 0.46 -7.08 16 12 C 0.16 5.95 4.49 86.38 0.39 6.34 16 13 N -0.71 -19.59 5.00 -463.05 -2.32 -21.91 16 14 C 0.51 14.03 7.83 87.66 0.69 14.72 16 15 O -0.59 -21.36 15.98 -3.03 -0.05 -21.41 16 16 C -0.13 -2.34 6.07 29.85 0.18 -2.16 16 17 C 0.08 1.60 4.03 71.98 0.29 1.89 16 18 O -0.33 -7.07 10.13 -92.58 -0.94 -8.01 16 19 C 0.10 1.99 6.68 22.46 0.15 2.14 16 20 C -0.19 -3.13 9.03 22.44 0.20 -2.93 16 21 C -0.10 -1.06 10.02 22.21 0.22 -0.84 16 22 C -0.09 -0.75 9.79 22.58 0.22 -0.53 16 23 C -0.17 -2.27 5.87 -20.16 -0.12 -2.39 16 24 C 0.39 4.28 11.46 70.17 0.80 5.09 16 25 O -0.51 -10.67 17.16 -2.94 -0.05 -10.72 16 26 C -0.12 -2.31 9.54 22.68 0.22 -2.10 16 27 H 0.07 1.87 7.13 -2.39 -0.02 1.85 16 28 H 0.04 1.73 4.30 -2.38 -0.01 1.72 16 29 H 0.04 1.54 8.12 -2.38 -0.02 1.52 16 30 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 31 H 0.03 1.28 2.25 -2.39 -0.01 1.28 16 32 H 0.08 2.04 6.86 -2.39 -0.02 2.02 16 33 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 34 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 35 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.41 8.76 6.26 -92.71 -0.58 8.18 16 37 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.07 1.42 7.63 -2.39 -0.02 1.41 16 40 H 0.07 1.42 7.60 -2.39 -0.02 1.41 16 41 H 0.13 2.25 6.28 -2.91 -0.02 2.24 16 42 H 0.16 0.89 8.06 -2.91 -0.02 0.86 16 43 H 0.18 -0.11 8.06 -2.91 -0.02 -0.14 16 44 H 0.17 -0.07 8.06 -2.91 -0.02 -0.09 16 45 H 0.12 2.71 7.65 -2.91 -0.02 2.69 16 Total: -1.00 -78.41 363.44 3.67 -74.74 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.19 Total: 17.23 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: 4.97 Total: -15.66 kcal Atomic # 7 Polarization: -77.90 SS G_CDS: -2.02 Total: -79.91 kcal Atomic # 8 Polarization: -39.10 SS G_CDS: -1.04 Total: -40.14 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 1.56 Total: 43.74 kcal Total: -78.41 3.67 -74.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837889559.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.971 kcal (2) G-P(sol) polarization free energy of solvation -78.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds