Wall clock time and date at job start Tue Mar 31 2020 13:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47103 * 2 1 4 4 C 1.52992 * 109.47379 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47310 * 179.97438 * 4 3 2 6 6 C 1.34775 * 120.00095 * 180.02562 * 5 4 3 7 7 O 1.21278 * 120.00318 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00052 * 180.02562 * 6 5 4 9 9 H 1.08997 * 109.47474 * 59.99657 * 8 6 5 10 10 C 1.53002 * 109.46922 * 299.99799 * 8 6 5 11 11 O 1.45197 * 109.47428 * 179.97438 * 8 6 5 12 12 C 1.34804 * 117.00380 * 209.99790 * 11 8 6 13 13 O 1.21533 * 119.99876 * 0.02562 * 12 11 8 14 14 C 1.47283 * 120.00105 * 179.97438 * 12 11 8 15 15 C 1.39296 * 120.28845 * 357.39650 * 14 12 11 16 16 C 1.38201 * 120.08139 * 179.72440 * 15 14 12 17 17 C 1.38833 * 120.69041 * 0.02562 * 16 15 14 18 18 C 1.37600 * 120.58150 * 359.97438 * 17 16 15 19 19 C 1.40704 * 119.88401 * 359.97438 * 18 17 16 20 20 C 1.40866 * 120.33170 * 180.02562 * 19 18 17 21 21 H 1.08004 * 119.99972 * 214.53998 * 20 19 18 22 22 C 1.40297 * 120.00046 * 34.53785 * 20 19 18 23 23 N 1.30610 * 119.99745 * 10.12182 * 22 20 19 24 24 Si 1.86798 * 120.00080 * 190.12511 * 22 20 19 25 25 H 1.48501 * 109.46920 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47263 * 119.99982 * 24 22 20 27 27 H 1.48499 * 109.47047 * 240.00035 * 24 22 20 28 28 H 1.09004 * 109.46916 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47157 * 299.99947 * 1 2 3 30 30 H 1.08994 * 109.47367 * 60.00504 * 1 2 3 31 31 H 1.08997 * 109.47793 * 239.99788 * 2 1 3 32 32 H 1.09004 * 109.47246 * 119.99467 * 2 1 3 33 33 H 1.08997 * 109.46969 * 59.99283 * 3 2 1 34 34 H 1.09004 * 109.46634 * 299.99841 * 3 2 1 35 35 H 1.09006 * 109.47150 * 59.99357 * 4 3 2 36 36 H 1.09005 * 109.47508 * 300.00115 * 4 3 2 37 37 H 0.96998 * 119.99970 * 0.02562 * 5 4 3 38 38 H 1.09004 * 109.47190 * 180.02562 * 10 8 6 39 39 H 1.08997 * 109.46930 * 300.00191 * 10 8 6 40 40 H 1.08994 * 109.46910 * 59.99987 * 10 8 6 41 41 H 1.07995 * 119.95600 * 359.75241 * 15 14 12 42 42 H 1.08007 * 119.65505 * 180.02562 * 16 15 14 43 43 H 1.07999 * 119.71003 * 179.97438 * 17 16 15 44 44 H 1.07996 * 120.05881 * 180.02562 * 18 17 16 45 45 H 0.97003 * 120.00112 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0582 2.8238 0.0000 6 6 5.3833 3.0701 -0.0001 7 8 6.1714 2.1484 0.0008 8 6 5.8856 4.4910 -0.0001 9 1 5.5223 5.0049 0.8898 10 6 5.3755 5.2122 -1.2494 11 8 7.3375 4.4911 0.0004 12 6 7.9493 5.5314 0.6009 13 8 7.2872 6.4139 1.1106 14 6 9.4201 5.5979 0.6404 15 6 10.1848 4.5630 0.1070 16 6 11.5646 4.6324 0.1413 17 6 12.2052 5.7277 0.7047 18 6 11.4772 6.7657 1.2396 19 6 10.0711 6.7207 1.2167 20 6 9.3165 7.7783 1.7611 21 1 8.3768 7.5741 2.2526 22 6 9.7858 9.0970 1.6648 23 7 10.8128 9.3708 0.9057 24 14 8.9418 10.4609 2.6223 25 1 7.8119 9.8932 3.4008 26 1 9.9158 11.0904 3.5498 27 1 8.4265 11.4836 1.6768 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6765 1.9564 0.8899 34 1 1.6766 1.9563 -0.8901 35 1 3.9337 0.9286 -0.8891 36 1 3.9330 0.9289 0.8909 37 1 3.4279 3.5611 -0.0003 38 1 5.7391 6.2397 -1.2497 39 1 5.7387 4.6983 -2.1393 40 1 4.2855 5.2121 -1.2493 41 1 9.6987 3.7054 -0.3342 42 1 12.1508 3.8262 -0.2746 43 1 13.2844 5.7654 0.7234 44 1 11.9842 7.6138 1.6754 45 1 11.1375 10.2825 0.8394 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855396465.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:39 Heat of formation + Delta-G solvation = -140.590532 kcal Electronic energy + Delta-G solvation = -26197.572284 eV Core-core repulsion = 22371.411528 eV Total energy + Delta-G solvation = -3826.160756 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.63302 -40.56972 -39.06469 -37.34877 -36.95652 -35.63782 -34.90066 -33.07068 -31.88382 -31.39045 -29.68790 -27.53690 -26.11695 -24.79416 -23.72061 -22.89183 -22.31218 -21.55886 -21.13237 -19.45479 -18.68680 -18.44240 -17.36845 -17.15994 -17.06000 -16.66252 -16.60740 -15.98317 -15.82853 -15.33970 -15.16692 -14.62227 -14.52392 -14.48353 -14.40726 -14.10668 -13.82479 -13.52208 -13.36633 -13.26477 -13.03647 -12.87598 -12.63744 -12.52061 -12.48282 -12.36525 -12.10677 -11.99065 -11.97887 -11.78327 -11.55820 -11.50029 -11.18997 -10.91369 -10.65323 -10.22878 -9.53936 -9.34364 -8.76078 -6.47824 0.29621 0.97021 1.35702 1.37941 1.44837 1.49013 1.51611 1.99164 2.19396 2.39226 2.70461 3.52349 3.60668 3.79852 3.84909 3.91296 4.02289 4.17470 4.19906 4.39264 4.43966 4.52693 4.61763 4.62778 4.63576 4.68180 4.85774 4.92884 4.93996 5.03087 5.05264 5.06581 5.16243 5.25117 5.25316 5.33157 5.36508 5.45628 5.47839 5.59449 5.78151 5.97934 6.04197 6.26448 6.36501 6.61648 6.76086 6.85637 7.05502 7.20049 8.21726 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017432 B = 0.002778 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.817674 B =10078.338582 C =11326.490606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.121 4.121 4 C 0.117 3.883 5 N -0.707 5.707 6 C 0.522 3.478 7 O -0.565 6.565 8 C 0.059 3.941 9 H 0.108 0.892 10 C -0.154 4.154 11 O -0.350 6.350 12 C 0.507 3.493 13 O -0.536 6.536 14 C -0.277 4.277 15 C -0.041 4.041 16 C -0.239 4.239 17 C -0.082 4.082 18 C -0.172 4.172 19 C 0.121 3.879 20 C -0.454 4.454 21 H 0.092 0.908 22 C 0.033 3.967 23 N -0.810 5.810 24 Si 0.985 3.015 25 H -0.265 1.265 26 H -0.254 1.254 27 H -0.263 1.263 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.419 0.581 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.131 0.869 43 H 0.128 0.872 44 H 0.109 0.891 45 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.829 -9.376 -2.873 19.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.159 4.159 4 C -0.006 4.006 5 N -0.362 5.362 6 C 0.307 3.693 7 O -0.443 6.443 8 C 0.001 3.999 9 H 0.125 0.875 10 C -0.212 4.212 11 O -0.267 6.267 12 C 0.358 3.642 13 O -0.428 6.428 14 C -0.280 4.280 15 C -0.060 4.060 16 C -0.258 4.258 17 C -0.100 4.100 18 C -0.191 4.191 19 C 0.118 3.882 20 C -0.482 4.482 21 H 0.110 0.890 22 C -0.184 4.184 23 N -0.435 5.435 24 Si 0.805 3.195 25 H -0.189 1.189 26 H -0.178 1.178 27 H -0.188 1.188 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.256 0.744 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.149 0.851 43 H 0.146 0.854 44 H 0.127 0.873 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.350 -9.618 -2.829 19.179 hybrid contribution -0.311 0.988 0.333 1.088 sum -16.661 -8.631 -2.496 18.929 Atomic orbital electron populations 1.21752 0.94733 1.02125 1.02229 1.21447 0.96688 0.95526 1.02487 1.21785 0.91332 0.98744 1.04018 1.21521 0.95762 0.81502 1.01799 1.45738 1.05199 1.10498 1.74740 1.20260 0.83452 0.89725 0.75814 1.90708 1.56650 1.46916 1.50012 1.22584 0.79491 0.94510 1.03354 0.87477 1.22134 1.03721 1.00297 0.95027 1.86688 1.21275 1.46525 1.72243 1.21352 0.89637 0.78571 0.74595 1.90663 1.66997 1.38814 1.46368 1.19071 0.87824 1.03270 1.17816 1.21115 0.94485 0.95860 0.94500 1.20810 0.93587 1.00881 1.10551 1.21239 0.99566 0.93295 0.95944 1.21289 0.93298 0.99054 1.05462 1.17829 0.92821 0.90582 0.87014 1.20374 1.06275 0.91468 1.30073 0.88969 1.26931 0.94739 1.02424 0.94307 1.69731 1.21338 1.23446 1.29014 0.85115 0.79116 0.76551 0.78713 1.18909 1.17847 1.18809 0.92353 0.92441 0.92221 0.91664 0.91955 0.90267 0.89794 0.92023 0.92583 0.74363 0.92163 0.91197 0.86367 0.86577 0.85108 0.85372 0.87288 0.89470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 71.98 0.71 -0.54 16 2 C -0.12 -1.23 5.93 30.60 0.18 -1.05 16 3 C -0.12 -1.23 5.33 30.59 0.16 -1.07 16 4 C 0.12 2.03 5.67 86.38 0.49 2.52 16 5 N -0.71 -13.90 5.45 -463.07 -2.52 -16.43 16 6 C 0.52 16.07 7.23 87.66 0.63 16.70 16 7 O -0.56 -22.73 16.50 15.78 0.26 -22.46 16 8 C 0.06 1.97 2.99 29.85 0.09 2.06 16 9 H 0.11 3.52 7.16 -2.39 -0.02 3.51 16 10 C -0.15 -3.98 9.45 71.98 0.68 -3.30 16 11 O -0.35 -15.46 8.67 -50.76 -0.44 -15.90 16 12 C 0.51 25.57 7.83 70.20 0.55 26.12 16 13 O -0.54 -28.20 12.77 19.73 0.25 -27.95 16 14 C -0.28 -14.67 5.92 -19.71 -0.12 -14.78 16 15 C -0.04 -1.95 9.60 22.52 0.22 -1.73 16 16 C -0.24 -10.32 10.03 22.40 0.22 -10.09 16 17 C -0.08 -3.64 10.01 22.26 0.22 -3.42 16 18 C -0.17 -8.86 8.62 22.72 0.20 -8.67 16 19 C 0.12 6.74 5.50 -21.10 -0.12 6.63 16 20 C -0.45 -25.47 7.78 23.41 0.18 -25.28 16 21 H 0.09 5.37 5.73 -2.91 -0.02 5.36 16 22 C 0.03 1.68 5.24 85.38 0.45 2.12 16 23 N -0.81 -41.59 11.22 21.88 0.25 -41.35 16 24 Si 0.98 39.29 29.57 68.60 2.03 41.31 16 25 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 26 H -0.25 -9.35 7.11 99.48 0.71 -8.64 16 27 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 28 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.08 0.70 8.14 -2.39 -0.02 0.69 16 34 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 36 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.42 5.22 7.89 -92.71 -0.73 4.49 16 38 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.12 1.86 7.56 -2.39 -0.02 1.84 16 41 H 0.12 5.14 7.60 -2.91 -0.02 5.12 16 42 H 0.13 4.67 8.06 -2.91 -0.02 4.64 16 43 H 0.13 4.74 8.06 -2.91 -0.02 4.72 16 44 H 0.11 5.70 6.66 -2.91 -0.02 5.68 16 45 H 0.29 13.44 8.29 -92.71 -0.77 12.67 16 Total: -1.00 -71.68 379.13 4.85 -66.83 By element: Atomic # 1 Polarization: 29.44 SS G_CDS: 0.27 Total: 29.71 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: 4.76 Total: -13.78 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: -2.28 Total: -57.78 kcal Atomic # 8 Polarization: -66.38 SS G_CDS: 0.07 Total: -66.31 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 2.03 Total: 41.31 kcal Total: -71.68 4.85 -66.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855396465.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.756 kcal (2) G-P(sol) polarization free energy of solvation -71.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds