Wall clock time and date at job start Tue Mar 31 2020 12:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47069 * 2 1 4 4 C 1.53001 * 109.47458 * 239.99781 * 2 1 3 5 5 C 1.53004 * 109.47178 * 119.99516 * 2 1 3 6 6 N 1.46505 * 109.46808 * 60.00149 * 5 2 1 7 7 C 1.34777 * 120.00043 * 179.97438 * 6 5 2 8 8 O 1.21286 * 119.99831 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00038 * 180.02562 * 7 6 5 10 10 O 1.45201 * 109.46944 * 180.02562 * 9 7 6 11 11 C 1.34804 * 116.99925 * 180.02562 * 10 9 7 12 12 O 1.21526 * 120.00158 * 359.97438 * 11 10 9 13 13 C 1.47288 * 120.00213 * 180.02562 * 11 10 9 14 14 C 1.39296 * 120.28603 * 354.83939 * 13 11 10 15 15 C 1.38205 * 120.08627 * 180.27692 * 14 13 11 16 16 C 1.38842 * 120.68093 * 359.73704 * 15 14 13 17 17 C 1.37598 * 120.58249 * 0.02562 * 16 15 14 18 18 C 1.40703 * 119.88779 * 0.02562 * 17 16 15 19 19 C 1.40861 * 120.33362 * 179.97438 * 18 17 16 20 20 H 1.07998 * 119.99855 * 145.73459 * 19 18 17 21 21 C 1.40300 * 119.99911 * 325.74373 * 19 18 17 22 22 N 1.30607 * 120.00073 * 339.67884 * 21 19 18 23 23 Si 1.86803 * 119.99808 * 159.68404 * 21 19 18 24 24 H 1.48497 * 109.46756 * 180.02562 * 23 21 19 25 25 H 1.48502 * 109.46906 * 299.99473 * 23 21 19 26 26 H 1.48494 * 109.47569 * 59.99623 * 23 21 19 27 27 H 1.08999 * 109.47544 * 300.00122 * 1 2 3 28 28 H 1.09001 * 109.47007 * 60.00579 * 1 2 3 29 29 H 1.09005 * 109.46678 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47003 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46733 * 299.99588 * 3 2 1 32 32 H 1.08999 * 109.47037 * 59.99567 * 3 2 1 33 33 H 1.09003 * 109.46648 * 299.99937 * 4 2 1 34 34 H 1.09002 * 109.46814 * 59.99642 * 4 2 1 35 35 H 1.09002 * 109.47175 * 180.02562 * 4 2 1 36 36 H 1.08999 * 109.47178 * 300.00586 * 5 2 1 37 37 H 1.09000 * 109.47014 * 180.02562 * 5 2 1 38 38 H 0.97003 * 119.99851 * 359.97438 * 6 5 2 39 39 H 1.08999 * 109.46912 * 60.00531 * 9 7 6 40 40 H 1.09000 * 109.47278 * 300.00043 * 9 7 6 41 41 H 1.08000 * 119.95653 * 0.02562 * 14 13 11 42 42 H 1.07997 * 119.65882 * 179.75950 * 15 14 13 43 43 H 1.07994 * 119.70815 * 180.02562 * 16 15 14 44 44 H 1.07997 * 120.05357 * 180.02562 * 17 16 15 45 45 H 0.97001 * 119.99997 * 355.29575 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 7 1.5517 -2.1024 1.2494 7 6 1.8776 -2.9324 2.2600 8 8 2.5749 -2.5357 3.1696 9 6 1.3758 -4.3534 2.2597 10 8 1.8597 -5.0378 3.4454 11 6 1.4983 -6.3275 3.5979 12 8 0.7977 -6.8650 2.7630 13 6 1.9517 -7.0849 4.7769 14 6 2.8402 -6.5095 5.6824 15 6 3.2674 -7.2260 6.7843 16 6 2.8158 -8.5200 7.0065 17 6 1.9342 -9.1136 6.1326 18 6 1.4843 -8.4066 5.0023 19 6 0.5823 -9.0054 4.1012 20 1 -0.1647 -8.4036 3.6050 21 6 0.6540 -10.3836 3.8486 22 7 1.7534 -11.0389 4.1090 23 14 -0.8228 -11.2813 3.1396 24 1 -0.4926 -12.7189 2.9680 25 1 -1.9758 -11.1459 4.0657 26 1 -1.1743 -10.6929 1.8223 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6767 -1.7490 -1.2491 34 1 1.6767 -0.2075 -2.1392 35 1 3.1301 -0.7217 -1.2489 36 1 1.6766 -0.2073 2.1393 37 1 3.1300 -0.7207 1.2495 38 1 0.9937 -2.4196 0.5220 39 1 1.7393 -4.8669 1.3696 40 1 0.2858 -4.3538 2.2598 41 1 3.1988 -5.5037 5.5211 42 1 3.9593 -6.7746 7.4799 43 1 3.1595 -9.0655 7.8729 44 1 1.5882 -10.1205 6.3139 45 1 2.5418 -10.5622 4.4125 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859485321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:34 Heat of formation + Delta-G solvation = -124.876426 kcal Electronic energy + Delta-G solvation = -26208.034397 eV Core-core repulsion = 22382.555055 eV Total energy + Delta-G solvation = -3825.479341 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.12662 -39.28985 -37.85637 -37.32912 -35.30673 -33.97607 -33.71983 -30.38230 -29.51913 -28.86143 -27.73809 -27.67485 -25.94360 -25.22482 -22.75722 -21.09685 -20.65592 -19.89335 -19.45199 -18.10228 -17.26662 -16.81352 -16.23569 -16.00403 -15.49925 -15.29836 -14.79062 -14.48920 -14.38729 -14.14045 -14.11182 -13.87053 -13.58000 -13.22056 -12.90614 -12.65055 -12.57732 -12.40671 -12.15449 -12.08497 -12.03227 -11.76322 -11.28664 -11.21683 -11.19193 -11.07168 -10.98525 -10.76438 -10.43919 -10.24556 -10.12702 -9.89591 -9.71019 -9.22984 -9.15999 -8.93871 -7.86591 -7.68643 -7.28608 -4.59416 2.07048 2.58693 2.65207 2.71996 3.14055 3.25362 3.34562 3.74136 3.79186 3.96100 4.24330 4.37550 4.45549 4.52913 4.70980 4.96818 5.13484 5.21048 5.26803 5.30131 5.36264 5.37291 5.39840 5.44051 5.51820 5.55474 5.65635 5.77181 5.90315 5.92642 5.94425 6.04891 6.19249 6.25306 6.42851 6.73737 6.91192 7.10026 7.27023 7.31989 7.46991 7.54405 7.71780 7.79636 8.03822 8.12125 8.14516 8.59588 8.71199 8.94385 9.92367 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017360 B = 0.002748 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.510837 B =10188.417946 C =11498.092525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 C -0.139 4.139 4 C -0.144 4.144 5 C 0.131 3.869 6 N -0.730 5.730 7 C 0.516 3.484 8 O -0.516 6.516 9 C 0.051 3.949 10 O -0.345 6.345 11 C 0.504 3.496 12 O -0.515 6.515 13 C -0.254 4.254 14 C -0.021 4.021 15 C -0.260 4.260 16 C -0.069 4.069 17 C -0.202 4.202 18 C 0.123 3.877 19 C -0.466 4.466 20 H 0.104 0.896 21 C 0.032 3.968 22 N -0.784 5.784 23 Si 1.071 2.929 24 H -0.273 1.273 25 H -0.273 1.273 26 H -0.272 1.272 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.400 0.600 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.107 0.893 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.109 0.891 45 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.074 16.721 -9.338 19.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.083 4.083 3 C -0.197 4.197 4 C -0.202 4.202 5 C 0.008 3.992 6 N -0.387 5.387 7 C 0.301 3.699 8 O -0.390 6.390 9 C -0.027 4.027 10 O -0.263 6.263 11 C 0.355 3.645 12 O -0.406 6.406 13 C -0.257 4.257 14 C -0.039 4.039 15 C -0.279 4.279 16 C -0.088 4.088 17 C -0.221 4.221 18 C 0.118 3.882 19 C -0.492 4.492 20 H 0.122 0.878 21 C -0.191 4.191 22 N -0.407 5.407 23 Si 0.894 3.106 24 H -0.198 1.198 25 H -0.198 1.198 26 H -0.197 1.197 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.236 0.764 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.126 0.874 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.127 0.873 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.260 15.332 -9.360 18.104 hybrid contribution 0.360 1.445 0.010 1.489 sum -1.901 16.776 -9.350 19.300 Atomic orbital electron populations 1.21908 0.93940 1.02077 1.02229 1.20828 0.96353 0.96181 0.94910 1.21807 1.01343 0.94312 1.02251 1.21910 1.01463 1.00170 0.96622 1.21408 0.99285 0.80916 0.97585 1.45896 1.54868 1.12317 1.25573 1.20314 0.80572 0.86989 0.82002 1.90738 1.36302 1.76838 1.35101 1.22359 1.00402 0.89962 0.89998 1.86686 1.70985 1.27018 1.41635 1.21439 0.77956 0.78333 0.86742 1.90737 1.37213 1.68527 1.44142 1.18622 1.11039 0.98196 0.97807 1.20986 0.92991 0.97470 0.92452 1.20355 1.09333 0.96531 1.01693 1.20821 0.95857 0.94670 0.97414 1.21188 1.03912 1.00788 0.96171 1.17459 0.89329 0.89700 0.91679 1.21185 1.12851 0.95423 1.19732 0.87811 1.27319 1.02301 0.95152 0.94324 1.70381 1.02265 1.41803 1.26240 0.83548 0.73588 0.76114 0.77381 1.19776 1.19818 1.19728 0.92241 0.92232 0.92494 0.92237 0.92072 0.92242 0.92493 0.92230 0.92234 0.91317 0.91312 0.76407 0.88875 0.88890 0.87445 0.88475 0.88571 0.87277 0.88610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 8.30 37.16 0.31 -0.57 16 2 C -0.08 -0.54 0.78 -154.50 -0.12 -0.66 16 3 C -0.14 -0.80 8.47 37.16 0.31 -0.48 16 4 C -0.14 -0.89 8.30 37.16 0.31 -0.58 16 5 C 0.13 1.22 4.57 -4.04 -0.02 1.20 16 6 N -0.73 -7.56 4.96 -60.29 -0.30 -7.86 16 7 C 0.52 7.73 7.91 -10.99 -0.09 7.65 16 8 O -0.52 -9.94 16.50 -14.11 -0.23 -10.17 16 9 C 0.05 0.82 5.96 36.00 0.21 1.03 16 10 O -0.35 -7.39 9.02 -47.46 -0.43 -7.82 16 11 C 0.50 12.26 7.85 34.41 0.27 12.53 16 12 O -0.52 -13.15 13.38 -19.28 -0.26 -13.41 16 13 C -0.25 -6.47 5.92 -104.39 -0.62 -7.08 16 14 C -0.02 -0.48 9.60 -39.20 -0.38 -0.85 16 15 C -0.26 -5.71 10.03 -39.37 -0.39 -6.10 16 16 C -0.07 -1.53 10.01 -39.59 -0.40 -1.93 16 17 C -0.20 -4.99 7.90 -38.88 -0.31 -5.30 16 18 C 0.12 3.26 5.16 -106.54 -0.55 2.71 16 19 C -0.47 -12.51 7.62 -37.81 -0.29 -12.80 16 20 H 0.10 2.87 5.99 -52.49 -0.31 2.55 16 21 C 0.03 0.80 5.01 -17.30 -0.09 0.72 16 22 N -0.78 -20.51 12.60 55.57 0.70 -19.81 16 23 Si 1.07 21.68 29.98 -169.99 -5.10 16.59 16 24 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 25 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 26 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.34 6.86 -51.93 -0.36 -0.01 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.35 6.86 -51.93 -0.36 -0.01 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.40 3.10 6.16 -40.82 -0.25 2.85 16 39 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.11 2.35 7.61 -52.49 -0.40 1.95 16 42 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 43 H 0.10 1.85 8.06 -52.49 -0.42 1.42 16 44 H 0.11 2.71 6.99 -52.49 -0.37 2.34 16 45 H 0.30 8.06 6.62 -40.82 -0.27 7.79 16 LS Contribution 373.91 15.07 5.63 5.63 Total: -1.00 -31.63 373.91 -8.41 -40.04 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -6.61 Total: 7.32 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -1.83 Total: -10.51 kcal Atomic # 7 Polarization: -28.07 SS G_CDS: 0.40 Total: -27.67 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -0.92 Total: -31.40 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.10 Total: 16.59 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.63 -8.41 -40.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859485321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.835 kcal (2) G-P(sol) polarization free energy of solvation -31.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds