Wall clock time and date at job start Tue Mar 31 2020 12:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35433 * 117.00305 * 2 1 4 4 C 1.39023 * 119.97489 * 359.72848 * 3 2 1 5 5 C 1.37525 * 120.26506 * 180.27698 * 4 3 2 6 6 C 1.40249 * 120.22276 * 359.97438 * 5 4 3 7 7 C 1.46905 * 120.02934 * 180.02562 * 6 5 4 8 8 O 1.21292 * 119.99791 * 179.97438 * 7 6 5 9 9 C 1.39612 * 119.94700 * 0.02562 * 6 5 4 10 10 C 1.39187 * 119.73295 * 0.02562 * 9 6 5 11 11 C 1.47582 * 120.10706 * 179.97438 * 10 9 6 12 12 O 1.21586 * 120.00227 * 180.02562 * 11 10 9 13 13 N 1.34778 * 120.00013 * 0.02562 * 11 10 9 14 14 C 1.46496 * 119.99888 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47167 * 179.97438 * 14 13 11 16 16 C 1.53006 * 109.47489 * 300.00460 * 15 14 13 17 17 C 1.53004 * 109.46903 * 60.00368 * 15 14 13 18 18 C 1.53005 * 109.47563 * 180.02562 * 15 14 13 19 19 C 1.50694 * 109.47334 * 180.02562 * 18 15 14 20 20 H 1.07998 * 120.00179 * 0.02562 * 19 18 15 21 21 C 1.37881 * 119.99962 * 179.97438 * 19 18 15 22 22 N 1.31514 * 120.00080 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99801 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47435 * 60.00277 * 23 21 19 25 25 H 1.48501 * 109.46820 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47033 * 299.99962 * 23 21 19 27 27 H 1.09005 * 109.46844 * 299.99769 * 1 2 3 28 28 H 1.09002 * 109.47056 * 59.99811 * 1 2 3 29 29 H 1.08996 * 109.47511 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.86885 * 0.24910 * 4 3 2 31 31 H 1.08004 * 119.89049 * 179.97438 * 5 4 3 32 32 H 1.07994 * 120.00018 * 359.97438 * 7 6 5 33 33 H 1.07992 * 120.13379 * 180.02562 * 9 6 5 34 34 H 0.96999 * 119.99833 * 359.97438 * 13 11 10 35 35 H 1.08999 * 109.47972 * 300.00109 * 14 13 11 36 36 H 1.09000 * 109.47172 * 60.00050 * 14 13 11 37 37 H 1.09003 * 109.46733 * 59.99478 * 16 15 14 38 38 H 1.08996 * 109.47073 * 180.02562 * 16 15 14 39 39 H 1.09003 * 109.46740 * 300.00090 * 16 15 14 40 40 H 1.08996 * 109.46906 * 59.99697 * 17 15 14 41 41 H 1.08998 * 109.47340 * 180.02562 * 17 15 14 42 42 H 1.09003 * 109.46623 * 300.00090 * 17 15 14 43 43 H 1.09004 * 109.46808 * 300.00465 * 18 15 14 44 44 H 1.09003 * 109.46748 * 59.99859 * 18 15 14 45 45 H 0.96993 * 120.00286 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2067 0.0000 4 6 1.2863 2.3723 -0.0057 5 6 1.9045 3.6008 -0.0115 6 6 3.3044 3.6866 -0.0111 7 6 3.9603 5.0011 -0.0167 8 8 5.1710 5.0747 -0.0159 9 6 4.0740 2.5218 -0.0054 10 6 3.4462 1.2796 -0.0006 11 6 4.2518 0.0431 0.0048 12 8 3.7014 -1.0411 0.0085 13 7 5.5976 0.1155 0.0057 14 6 6.3972 -1.1120 0.0117 15 6 7.8843 -0.7519 0.0109 16 6 8.2110 0.0635 -1.2418 17 6 8.2095 0.0747 1.2567 18 6 8.7195 -2.0339 0.0165 19 6 10.1841 -1.6793 0.0164 20 1 10.4889 -0.6432 0.0130 21 6 11.1352 -2.6776 0.0215 22 7 10.7641 -3.9393 0.0261 23 14 12.9507 -2.2379 0.0220 24 1 13.2656 -1.4362 1.2317 25 1 13.7612 -3.4822 0.0273 26 1 13.2685 -1.4459 -1.1933 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 0.2079 2.3129 -0.0061 31 1 1.3100 4.5025 -0.0163 32 1 3.3646 5.9018 -0.0216 33 1 5.1521 2.5844 -0.0047 34 1 6.0367 0.9804 0.0024 35 1 6.1643 -1.6931 0.9040 36 1 6.1658 -1.7007 -0.8759 37 1 7.6160 0.9768 -1.2462 38 1 9.2705 0.3196 -1.2426 39 1 7.9792 -0.5254 -2.1293 40 1 7.9768 -0.5062 2.1491 41 1 9.2688 0.3316 1.2559 42 1 7.6145 0.9879 1.2522 43 1 8.4868 -2.6152 0.9088 44 1 8.4876 -2.6224 -0.8712 45 1 11.4331 -4.6415 0.0301 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868358482.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:45 Heat of formation + Delta-G solvation = -92.325713 kcal Electronic energy + Delta-G solvation = -26611.312843 eV Core-core repulsion = 22787.245006 eV Total energy + Delta-G solvation = -3824.067836 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.95172 -39.32253 -39.13871 -37.30165 -36.90256 -33.63397 -32.31459 -31.57705 -30.88714 -27.97068 -27.09130 -26.45909 -26.27047 -24.56696 -24.12007 -22.72632 -21.23224 -20.24545 -18.98987 -18.10517 -17.46216 -16.82628 -16.25767 -16.17730 -15.97505 -15.34729 -15.23466 -14.95050 -14.93590 -14.49460 -14.47684 -13.83811 -13.57674 -13.52983 -13.26545 -12.98166 -12.76933 -12.68852 -12.28907 -12.05204 -12.01874 -11.58732 -11.44867 -11.10498 -10.96256 -10.83554 -10.58655 -10.36010 -10.22895 -10.20175 -9.82955 -9.70697 -9.54614 -9.12916 -8.89522 -8.76032 -8.56281 -8.32129 -5.96403 -3.97523 0.29239 0.62162 2.00342 2.85309 2.94812 3.35194 3.36650 3.40158 3.42612 3.65371 3.89021 4.21566 4.31457 4.48574 4.59556 4.79589 4.80898 4.82180 4.92698 5.10595 5.17915 5.34804 5.39034 5.54352 5.61526 5.67508 5.71716 5.80637 5.81655 6.14321 6.22865 6.28047 6.33738 6.44549 6.60877 6.68430 6.80937 6.94851 7.11178 7.12146 7.12177 7.17186 7.67670 7.77918 7.80412 8.02498 8.43433 8.48064 9.07100 9.65385 11.15091 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017201 B = 0.002937 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.444427 B = 9531.630665 C =10957.403348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.271 6.271 3 C 0.217 3.783 4 C -0.236 4.236 5 C -0.006 4.006 6 C -0.244 4.244 7 C 0.385 3.615 8 O -0.460 6.460 9 C 0.012 3.988 10 C -0.179 4.179 11 C 0.552 3.448 12 O -0.523 6.523 13 N -0.719 5.719 14 C 0.130 3.870 15 C -0.073 4.073 16 C -0.128 4.128 17 C -0.127 4.127 18 C 0.037 3.963 19 C -0.511 4.511 20 H 0.059 0.941 21 C 0.056 3.944 22 N -0.895 5.895 23 Si 0.889 3.111 24 H -0.278 1.278 25 H -0.288 1.288 26 H -0.278 1.278 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.105 0.895 30 H 0.141 0.859 31 H 0.139 0.861 32 H 0.105 0.895 33 H 0.144 0.856 34 H 0.396 0.604 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.028 0.972 38 H 0.067 0.933 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.067 0.933 42 H 0.028 0.972 43 H 0.018 0.982 44 H 0.018 0.982 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.203 17.117 -0.084 28.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.181 6.181 3 C 0.167 3.833 4 C -0.255 4.255 5 C -0.024 4.024 6 C -0.245 4.245 7 C 0.243 3.757 8 O -0.333 6.333 9 C -0.006 4.006 10 C -0.183 4.183 11 C 0.338 3.662 12 O -0.400 6.400 13 N -0.371 5.371 14 C 0.007 3.993 15 C -0.074 4.074 16 C -0.185 4.185 17 C -0.185 4.185 18 C 0.000 4.000 19 C -0.549 4.549 20 H 0.077 0.923 21 C -0.145 4.145 22 N -0.535 5.535 23 Si 0.717 3.283 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.203 1.203 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.124 0.876 30 H 0.159 0.841 31 H 0.157 0.843 32 H 0.121 0.879 33 H 0.161 0.839 34 H 0.233 0.767 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.047 0.953 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.086 0.914 42 H 0.047 0.953 43 H 0.037 0.963 44 H 0.037 0.963 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -22.778 15.940 -0.081 27.802 hybrid contribution 0.797 0.628 0.002 1.015 sum -21.981 16.568 -0.079 27.526 Atomic orbital electron populations 1.23257 0.78311 1.04799 1.01332 1.86398 1.21120 1.25303 1.85233 1.19398 0.91048 0.85057 0.87836 1.21204 1.00636 0.91793 1.11871 1.21267 0.93159 0.97592 0.90394 1.20751 0.94421 0.96226 1.13119 1.23878 0.89763 0.91579 0.70437 1.90579 1.17734 1.90087 1.34907 1.21518 1.00602 0.89935 0.88595 1.19505 0.90979 0.94515 1.13313 1.17877 0.82381 0.88214 0.77700 1.90821 1.71398 1.28660 1.49134 1.46141 1.05458 1.10984 1.74550 1.21642 0.90660 0.85035 1.01925 1.20923 0.91734 0.99587 0.95134 1.21769 1.01921 0.97540 0.97251 1.21767 1.01920 0.97489 0.97299 1.19079 0.93621 0.89843 0.97485 1.21157 0.90896 0.92600 1.50292 0.92283 1.25008 0.98828 0.95065 0.95566 1.69953 1.33685 0.98961 1.50867 0.86712 0.85449 0.77605 0.78541 1.20319 1.21421 1.20323 0.92306 0.92299 0.87616 0.84125 0.84301 0.87880 0.83877 0.76733 0.91663 0.91668 0.95283 0.91364 0.93325 0.93320 0.91370 0.95287 0.96330 0.96324 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.80 101.05 0.99 1.11 16 2 O -0.27 -3.38 8.54 -39.93 -0.34 -3.72 16 3 C 0.22 2.48 6.71 -38.47 -0.26 2.22 16 4 C -0.24 -1.76 9.00 -39.55 -0.36 -2.12 16 5 C -0.01 -0.03 9.77 -39.09 -0.38 -0.42 16 6 C -0.24 -2.06 5.86 -105.12 -0.62 -2.67 16 7 C 0.38 2.95 11.44 34.24 0.39 3.34 16 8 O -0.46 -5.60 17.15 5.55 0.10 -5.51 16 9 C 0.01 0.14 9.08 -38.72 -0.35 -0.21 16 10 C -0.18 -2.35 5.88 -104.91 -0.62 -2.97 16 11 C 0.55 9.15 7.76 -12.45 -0.10 9.06 16 12 O -0.52 -10.49 15.15 -16.65 -0.25 -10.74 16 13 N -0.72 -11.43 4.91 -61.34 -0.30 -11.73 16 14 C 0.13 2.41 4.56 -4.04 -0.02 2.40 16 15 C -0.07 -1.45 0.54 -154.50 -0.08 -1.53 16 16 C -0.13 -2.35 8.05 37.16 0.30 -2.05 16 17 C -0.13 -2.35 8.05 37.16 0.30 -2.05 16 18 C 0.04 0.93 4.04 -27.88 -0.11 0.82 16 19 C -0.51 -13.82 7.65 -34.44 -0.26 -14.08 16 20 H 0.06 1.54 5.68 -52.49 -0.30 1.24 16 21 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 22 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 23 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 28 H 0.06 0.29 7.64 -51.93 -0.40 -0.11 16 29 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.14 0.64 6.27 -52.49 -0.33 0.31 16 31 H 0.14 0.30 8.06 -52.48 -0.42 -0.12 16 32 H 0.11 0.33 8.06 -52.49 -0.42 -0.09 16 33 H 0.14 1.59 5.97 -52.49 -0.31 1.28 16 34 H 0.40 5.54 4.19 -40.82 -0.17 5.37 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 38 H 0.07 1.34 6.62 -51.93 -0.34 1.00 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.07 1.34 6.62 -51.93 -0.34 1.00 16 42 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 43 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 369.31 15.07 5.57 5.57 Total: -1.00 -35.24 369.31 -7.04 -42.28 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -6.25 Total: 1.03 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -1.27 Total: -7.65 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.44 Total: -37.77 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.50 Total: -19.96 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.24 -7.04 -42.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868358482.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.048 kcal (2) G-P(sol) polarization free energy of solvation -35.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds