Wall clock time and date at job start Tue Mar 31 2020 12:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 120.00175 * 2 1 4 4 C 1.50707 * 119.99922 * 179.97438 * 2 1 3 5 5 C 1.53001 * 109.46710 * 95.00258 * 4 2 1 6 6 H 1.09000 * 109.47241 * 304.99847 * 5 4 2 7 7 C 1.52997 * 109.46861 * 185.00071 * 5 4 2 8 8 O 1.42898 * 109.47085 * 304.99842 * 7 5 4 9 9 N 1.46495 * 109.47323 * 65.00153 * 5 4 2 10 10 C 1.34780 * 120.00233 * 205.00300 * 9 5 4 11 11 O 1.21281 * 119.99570 * 359.97438 * 10 9 5 12 12 C 1.50695 * 120.00442 * 179.97438 * 10 9 5 13 13 C 1.50693 * 109.47358 * 179.97438 * 12 10 9 14 14 C 1.38302 * 119.93121 * 269.72473 * 13 12 10 15 15 C 1.38110 * 120.06876 * 179.72480 * 14 13 12 16 16 C 1.38874 * 119.92705 * 0.56830 * 15 14 13 17 17 O 1.35753 * 120.06651 * 179.67881 * 16 15 14 18 18 C 1.34830 * 116.99840 * 174.48787 * 17 16 15 19 19 H 1.07999 * 119.99950 * 5.06296 * 18 17 16 20 20 C 1.38658 * 119.99978 * 185.05886 * 18 17 16 21 21 N 1.31558 * 119.99692 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99785 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47406 * 60.00664 * 22 20 18 24 24 H 1.48505 * 109.46722 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47675 * 300.00082 * 22 20 18 26 26 C 1.38883 * 119.86686 * 359.71121 * 16 15 14 27 27 C 1.38105 * 119.92840 * 359.97438 * 26 16 15 28 28 H 1.07998 * 119.99919 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.00200 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46644 * 240.00144 * 3 2 1 31 31 H 1.09002 * 109.47254 * 359.97438 * 3 2 1 32 32 H 1.08991 * 109.47558 * 120.00040 * 3 2 1 33 33 H 1.09002 * 109.47092 * 335.00117 * 4 2 1 34 34 H 1.09000 * 109.46999 * 215.00103 * 4 2 1 35 35 H 1.09004 * 109.47272 * 64.99830 * 7 5 4 36 36 H 1.09006 * 109.47050 * 184.99457 * 7 5 4 37 37 H 0.96702 * 113.99648 * 180.02562 * 8 7 5 38 38 H 0.97003 * 120.00149 * 24.99211 * 9 5 4 39 39 H 1.09001 * 109.47055 * 299.99689 * 12 10 9 40 40 H 1.09001 * 109.46889 * 59.99419 * 12 10 9 41 41 H 1.08000 * 119.96541 * 359.97438 * 14 13 12 42 42 H 1.07990 * 120.03414 * 180.27964 * 15 14 13 43 43 H 0.97003 * 119.99229 * 179.97438 * 21 20 18 44 44 H 1.07997 * 120.03567 * 179.97438 * 26 16 15 45 45 H 1.07995 * 119.96399 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3052 0.0006 5 6 2.4274 -1.6845 -1.4363 6 1 1.5245 -1.7042 -2.0467 7 6 3.0814 -3.0676 -1.4485 8 8 4.1983 -3.0742 -0.5572 9 7 3.3630 -0.6971 -1.9801 10 6 3.4420 -0.5055 -3.3118 11 8 2.7388 -1.1509 -4.0600 12 6 4.4041 0.5107 -3.8712 13 6 4.2976 0.5290 -5.3742 14 6 5.1022 -0.3013 -6.1332 15 6 5.0030 -0.2908 -7.5107 16 6 4.1026 0.5631 -8.1341 17 8 4.0074 0.5803 -9.4881 18 6 3.0361 1.3468 -10.0237 19 1 2.4305 1.9744 -9.3867 20 6 2.8147 1.3295 -11.3924 21 7 3.5522 0.5647 -12.1683 22 14 1.4695 2.3920 -12.1345 23 1 1.7441 3.8201 -11.8337 24 1 1.4367 2.1930 -13.6058 25 1 0.1579 2.0072 -11.5541 26 6 3.3001 1.3998 -7.3694 27 6 3.3994 1.3801 -5.9921 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 2.6902 1.3627 -0.8901 31 1 1.3552 2.1336 -0.0005 32 1 2.6902 1.3629 0.8899 33 1 1.4385 -2.0853 0.4352 34 1 2.9742 -1.1987 0.5900 35 1 2.3561 -3.8154 -1.1277 36 1 3.4207 -3.3002 -2.4580 37 1 4.6624 -3.9215 -0.5145 38 1 3.9256 -0.1810 -1.3816 39 1 4.1601 1.4973 -3.4773 40 1 5.4211 0.2455 -3.5824 41 1 5.8059 -0.9614 -5.6480 42 1 5.6284 -0.9427 -8.1026 43 1 3.3970 0.5523 -13.1258 44 1 2.5992 2.0653 -7.8514 45 1 2.7754 2.0302 -5.3969 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882894497.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:26 Heat of formation + Delta-G solvation = -80.157952 kcal Electronic energy + Delta-G solvation = -26159.262056 eV Core-core repulsion = 22335.721853 eV Total energy + Delta-G solvation = -3823.540203 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.05175 -38.89418 -37.74936 -36.39983 -36.27699 -34.00860 -32.44059 -31.59542 -30.23570 -30.06525 -27.52107 -26.57753 -26.40915 -25.05023 -22.06439 -21.90382 -20.71618 -20.06081 -18.85830 -17.91881 -17.76216 -16.96151 -16.75148 -16.22738 -15.55880 -15.11472 -14.82373 -14.58255 -14.40197 -14.12268 -14.09344 -13.88205 -13.70792 -13.50143 -13.34722 -13.04758 -12.64350 -12.53788 -12.45138 -12.14558 -11.82223 -11.75943 -11.56014 -11.44745 -11.20649 -11.13118 -10.78611 -10.69643 -10.58618 -10.39314 -10.33796 -9.63405 -9.40248 -9.27087 -8.95077 -8.76447 -8.08554 -7.09911 -6.39534 -3.98057 1.96766 2.31162 2.33172 2.83746 3.15896 3.17114 3.20499 3.26051 4.01404 4.01666 4.41537 4.58921 4.62141 4.71193 5.00733 5.05228 5.09547 5.14370 5.14497 5.30152 5.32640 5.36594 5.38808 5.40707 5.50273 5.55824 5.66211 5.70586 5.74388 5.79350 5.83209 5.91462 6.27786 6.35676 6.44114 6.48213 6.62004 6.76856 6.98023 7.11343 7.29989 7.30704 7.43645 7.50339 7.56565 7.90607 8.05887 8.40248 9.06215 9.77304 10.78696 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018711 B = 0.002544 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.066969 B =11002.371517 C =11705.264197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.124 4.124 3 C -0.122 4.122 4 C -0.087 4.087 5 C 0.156 3.844 6 H 0.099 0.901 7 C 0.062 3.938 8 O -0.570 6.570 9 N -0.726 5.726 10 C 0.510 3.490 11 O -0.524 6.524 12 C -0.080 4.080 13 C -0.168 4.168 14 C -0.060 4.060 15 C -0.192 4.192 16 C 0.156 3.844 17 O -0.179 6.179 18 C -0.391 4.391 19 H 0.091 0.909 20 C 0.039 3.961 21 N -0.864 5.864 22 Si 0.940 3.060 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.232 4.232 27 C -0.057 4.057 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.052 0.948 36 H 0.055 0.945 37 H 0.378 0.622 38 H 0.399 0.601 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.107 0.893 42 H 0.116 0.884 43 H 0.270 0.730 44 H 0.126 0.874 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.754 -2.415 26.207 26.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.124 4.124 3 C -0.179 4.179 4 C -0.125 4.125 5 C 0.051 3.949 6 H 0.117 0.883 7 C -0.017 4.017 8 O -0.375 6.375 9 N -0.380 5.380 10 C 0.296 3.704 11 O -0.398 6.398 12 C -0.120 4.120 13 C -0.169 4.169 14 C -0.078 4.078 15 C -0.211 4.211 16 C 0.103 3.897 17 O -0.082 6.082 18 C -0.467 4.467 19 H 0.108 0.892 20 C -0.165 4.165 21 N -0.500 5.500 22 Si 0.765 3.235 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.195 1.195 26 C -0.252 4.252 27 C -0.075 4.075 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.224 0.776 38 H 0.234 0.766 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.125 0.875 42 H 0.134 0.866 43 H 0.080 0.920 44 H 0.144 0.856 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.322 -2.429 25.280 25.431 hybrid contribution -0.409 0.116 -0.168 0.457 sum -1.731 -2.313 25.112 25.278 Atomic orbital electron populations 1.23723 0.95214 1.01890 1.02481 1.21706 0.95404 0.95700 0.99599 1.20952 1.00446 0.94343 1.02143 1.20849 1.00859 0.94918 0.95882 1.20976 0.92869 0.86688 0.94396 0.88286 1.22684 0.88405 0.97188 0.93460 1.86431 1.45728 1.39099 1.66251 1.46108 1.42688 1.41885 1.07284 1.21055 0.83844 0.83976 0.81488 1.90737 1.43215 1.47833 1.58013 1.20407 0.98821 0.98213 0.94580 1.18632 1.02960 1.03339 0.91984 1.20395 0.97795 0.96873 0.92768 1.20148 1.03713 1.03347 0.93881 1.19374 0.93025 0.92506 0.84819 1.83976 1.49295 1.60999 1.13964 1.21279 1.11950 1.21999 0.91499 0.89164 1.25277 0.98437 0.97653 0.95156 1.70036 1.37978 1.36801 1.05147 0.85792 0.80031 0.79513 0.78156 1.19527 1.20307 1.19515 1.21102 1.05334 1.04999 0.93716 1.20503 0.95972 0.97064 0.93949 0.88497 0.88574 0.91244 0.92049 0.91627 0.90134 0.89826 0.93030 0.92657 0.77567 0.76634 0.89152 0.89031 0.87460 0.86599 0.92039 0.85633 0.87882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.62 13.90 29.01 0.40 -1.22 16 2 C -0.12 -1.01 5.14 -101.06 -0.52 -1.53 16 3 C -0.12 -0.88 9.83 36.00 0.35 -0.52 16 4 C -0.09 -0.67 4.64 -27.88 -0.13 -0.80 16 5 C 0.16 1.52 2.36 -67.93 -0.16 1.36 16 6 H 0.10 1.17 7.58 -51.93 -0.39 0.78 16 7 C 0.06 0.55 6.85 37.16 0.25 0.81 16 8 O -0.57 -4.54 12.83 -35.23 -0.45 -5.00 16 9 N -0.73 -7.39 3.89 -53.81 -0.21 -7.60 16 10 C 0.51 7.10 7.79 -10.99 -0.09 7.01 16 11 O -0.52 -9.82 15.70 5.56 0.09 -9.74 16 12 C -0.08 -1.03 5.83 -29.04 -0.17 -1.20 16 13 C -0.17 -2.99 4.38 -104.58 -0.46 -3.45 16 14 C -0.06 -1.14 9.69 -39.60 -0.38 -1.52 16 15 C -0.19 -4.28 9.99 -39.39 -0.39 -4.67 16 16 C 0.16 3.96 6.65 -39.11 -0.26 3.70 16 17 O -0.18 -5.28 9.76 0.04 0.00 -5.28 16 18 C -0.39 -11.27 9.49 30.89 0.29 -10.98 16 19 H 0.09 2.41 5.20 -52.49 -0.27 2.14 16 20 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 21 N -0.86 -25.95 13.67 55.48 0.76 -25.19 16 22 Si 0.94 21.05 29.55 -169.99 -5.02 16.02 16 23 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 24 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 26 C -0.23 -5.32 9.17 -39.39 -0.36 -5.68 16 27 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 28 H 0.10 0.75 7.83 -52.49 -0.41 0.34 16 29 H 0.10 0.73 7.99 -52.49 -0.42 0.31 16 30 H 0.07 0.51 6.35 -51.93 -0.33 0.18 16 31 H 0.06 0.43 7.78 -51.93 -0.40 0.03 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.56 7.99 -51.93 -0.41 0.14 16 34 H 0.08 0.64 7.73 -51.93 -0.40 0.23 16 35 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.38 1.61 9.12 45.56 0.42 2.02 16 38 H 0.40 3.18 7.51 -40.82 -0.31 2.87 16 39 H 0.09 0.95 8.08 -51.93 -0.42 0.53 16 40 H 0.09 0.97 8.08 -51.93 -0.42 0.55 16 41 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 42 H 0.12 2.49 8.06 -52.49 -0.42 2.06 16 43 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.13 2.86 5.64 -52.49 -0.30 2.57 16 45 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 381.41 15.07 5.75 5.75 Total: -1.00 -35.30 381.41 -6.93 -42.23 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -5.75 Total: 7.99 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: -2.10 Total: -19.19 kcal Atomic # 7 Polarization: -33.33 SS G_CDS: 0.55 Total: -32.78 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.36 Total: -20.02 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.30 -6.93 -42.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882894497.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.926 kcal (2) G-P(sol) polarization free energy of solvation -35.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds