Wall clock time and date at job start Tue Mar 31 2020 12:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 120.00175 * 2 1 4 4 C 1.50707 * 119.99922 * 179.97438 * 2 1 3 5 5 C 1.53001 * 109.46710 * 95.00258 * 4 2 1 6 6 H 1.09000 * 109.47241 * 304.99847 * 5 4 2 7 7 C 1.52997 * 109.46861 * 185.00071 * 5 4 2 8 8 O 1.42898 * 109.47085 * 304.99842 * 7 5 4 9 9 N 1.46495 * 109.47323 * 65.00153 * 5 4 2 10 10 C 1.34780 * 120.00233 * 205.00300 * 9 5 4 11 11 O 1.21281 * 119.99570 * 359.97438 * 10 9 5 12 12 C 1.50695 * 120.00442 * 179.97438 * 10 9 5 13 13 C 1.50693 * 109.47358 * 179.97438 * 12 10 9 14 14 C 1.38302 * 119.93121 * 269.72473 * 13 12 10 15 15 C 1.38110 * 120.06876 * 179.72480 * 14 13 12 16 16 C 1.38874 * 119.92705 * 0.56830 * 15 14 13 17 17 O 1.35753 * 120.06651 * 179.67881 * 16 15 14 18 18 C 1.34830 * 116.99840 * 174.48787 * 17 16 15 19 19 H 1.07999 * 119.99950 * 5.06296 * 18 17 16 20 20 C 1.38658 * 119.99978 * 185.05886 * 18 17 16 21 21 N 1.31558 * 119.99692 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99785 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47406 * 60.00664 * 22 20 18 24 24 H 1.48505 * 109.46722 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47675 * 300.00082 * 22 20 18 26 26 C 1.38883 * 119.86686 * 359.71121 * 16 15 14 27 27 C 1.38105 * 119.92840 * 359.97438 * 26 16 15 28 28 H 1.07998 * 119.99919 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.00200 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46644 * 240.00144 * 3 2 1 31 31 H 1.09002 * 109.47254 * 359.97438 * 3 2 1 32 32 H 1.08991 * 109.47558 * 120.00040 * 3 2 1 33 33 H 1.09002 * 109.47092 * 335.00117 * 4 2 1 34 34 H 1.09000 * 109.46999 * 215.00103 * 4 2 1 35 35 H 1.09004 * 109.47272 * 64.99830 * 7 5 4 36 36 H 1.09006 * 109.47050 * 184.99457 * 7 5 4 37 37 H 0.96702 * 113.99648 * 180.02562 * 8 7 5 38 38 H 0.97003 * 120.00149 * 24.99211 * 9 5 4 39 39 H 1.09001 * 109.47055 * 299.99689 * 12 10 9 40 40 H 1.09001 * 109.46889 * 59.99419 * 12 10 9 41 41 H 1.08000 * 119.96541 * 359.97438 * 14 13 12 42 42 H 1.07990 * 120.03414 * 180.27964 * 15 14 13 43 43 H 0.97003 * 119.99229 * 179.97438 * 21 20 18 44 44 H 1.07997 * 120.03567 * 179.97438 * 26 16 15 45 45 H 1.07995 * 119.96399 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3052 0.0006 5 6 2.4274 -1.6845 -1.4363 6 1 1.5245 -1.7042 -2.0467 7 6 3.0814 -3.0676 -1.4485 8 8 4.1983 -3.0742 -0.5572 9 7 3.3630 -0.6971 -1.9801 10 6 3.4420 -0.5055 -3.3118 11 8 2.7388 -1.1509 -4.0600 12 6 4.4041 0.5107 -3.8712 13 6 4.2976 0.5290 -5.3742 14 6 5.1022 -0.3013 -6.1332 15 6 5.0030 -0.2908 -7.5107 16 6 4.1026 0.5631 -8.1341 17 8 4.0074 0.5803 -9.4881 18 6 3.0361 1.3468 -10.0237 19 1 2.4305 1.9744 -9.3867 20 6 2.8147 1.3295 -11.3924 21 7 3.5522 0.5647 -12.1683 22 14 1.4695 2.3920 -12.1345 23 1 1.7441 3.8201 -11.8337 24 1 1.4367 2.1930 -13.6058 25 1 0.1579 2.0072 -11.5541 26 6 3.3001 1.3998 -7.3694 27 6 3.3994 1.3801 -5.9921 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 2.6902 1.3627 -0.8901 31 1 1.3552 2.1336 -0.0005 32 1 2.6902 1.3629 0.8899 33 1 1.4385 -2.0853 0.4352 34 1 2.9742 -1.1987 0.5900 35 1 2.3561 -3.8154 -1.1277 36 1 3.4207 -3.3002 -2.4580 37 1 4.6624 -3.9215 -0.5145 38 1 3.9256 -0.1810 -1.3816 39 1 4.1601 1.4973 -3.4773 40 1 5.4211 0.2455 -3.5824 41 1 5.8059 -0.9614 -5.6480 42 1 5.6284 -0.9427 -8.1026 43 1 3.3970 0.5523 -13.1258 44 1 2.5992 2.0653 -7.8514 45 1 2.7754 2.0302 -5.3969 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882894497.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:25 Heat of formation + Delta-G solvation = -105.730830 kcal Electronic energy + Delta-G solvation = -26160.370979 eV Core-core repulsion = 22335.721853 eV Total energy + Delta-G solvation = -3824.649126 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.19016 -40.53134 -38.78552 -37.97771 -36.91835 -34.88540 -34.39528 -32.98264 -31.77858 -31.19785 -28.24722 -27.94316 -27.14536 -26.90681 -23.63090 -23.17804 -21.92367 -21.23282 -19.84234 -19.51807 -18.83253 -18.45543 -17.77756 -17.14506 -16.64187 -16.35800 -16.16255 -15.94192 -15.72326 -15.50005 -15.32427 -14.93056 -14.84278 -14.68553 -14.52915 -14.38115 -14.08422 -13.73879 -13.60047 -13.27111 -12.94725 -12.78884 -12.72039 -12.44489 -12.39090 -12.30444 -12.24019 -12.19580 -12.13709 -11.77674 -11.17924 -11.03422 -10.84528 -10.69502 -10.16759 -9.75975 -9.73634 -8.89186 -8.47302 -6.15532 0.61922 0.68377 1.33470 1.34890 1.44778 1.50241 1.77673 2.17702 2.28713 2.85744 3.18149 3.39880 3.53026 3.76031 3.88497 3.98208 4.05577 4.06487 4.18860 4.26811 4.32947 4.42781 4.49930 4.53501 4.60351 4.67923 4.72770 4.78905 4.81122 4.90335 4.91526 5.05503 5.09326 5.13931 5.15359 5.19157 5.31253 5.56759 5.58074 5.72087 5.76995 5.79026 6.00677 6.02913 6.23709 6.68257 6.86207 6.97163 7.40814 7.78700 8.76098 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018711 B = 0.002544 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.066969 B =11002.371517 C =11705.264197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.131 4.131 3 C -0.124 4.124 4 C -0.077 4.077 5 C 0.153 3.847 6 H 0.075 0.925 7 C 0.068 3.932 8 O -0.574 6.574 9 N -0.705 5.705 10 C 0.511 3.489 11 O -0.581 6.581 12 C -0.079 4.079 13 C -0.143 4.143 14 C -0.058 4.058 15 C -0.206 4.206 16 C 0.112 3.888 17 O -0.234 6.234 18 C -0.415 4.415 19 H 0.100 0.900 20 C -0.024 4.024 21 N -0.922 5.922 22 Si 1.019 2.981 23 H -0.255 1.255 24 H -0.270 1.270 25 H -0.260 1.260 26 C -0.244 4.244 27 C -0.060 4.060 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.030 0.970 37 H 0.395 0.605 38 H 0.414 0.586 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.145 0.855 42 H 0.112 0.888 43 H 0.273 0.727 44 H 0.117 0.883 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.759 -1.505 30.200 30.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.131 4.131 3 C -0.180 4.180 4 C -0.114 4.114 5 C 0.048 3.952 6 H 0.093 0.907 7 C -0.011 4.011 8 O -0.382 6.382 9 N -0.359 5.359 10 C 0.299 3.701 11 O -0.460 6.460 12 C -0.119 4.119 13 C -0.144 4.144 14 C -0.076 4.076 15 C -0.226 4.226 16 C 0.062 3.938 17 O -0.140 6.140 18 C -0.492 4.492 19 H 0.117 0.883 20 C -0.221 4.221 21 N -0.560 5.560 22 Si 0.838 3.162 23 H -0.179 1.179 24 H -0.194 1.194 25 H -0.184 1.184 26 C -0.263 4.263 27 C -0.078 4.078 28 H 0.116 0.884 29 H 0.117 0.883 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.086 0.914 36 H 0.048 0.952 37 H 0.244 0.756 38 H 0.252 0.748 39 H 0.145 0.855 40 H 0.146 0.854 41 H 0.163 0.837 42 H 0.130 0.870 43 H 0.082 0.918 44 H 0.135 0.865 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.288 -1.517 29.391 29.459 hybrid contribution -0.306 -0.264 -0.983 1.062 sum -1.594 -1.781 28.409 28.509 Atomic orbital electron populations 1.23863 0.95613 1.02202 1.02781 1.21902 0.95526 0.96387 0.99333 1.20994 1.00546 0.93672 1.02838 1.20776 1.01279 0.95012 0.94352 1.21011 0.91973 0.87121 0.95121 0.90656 1.22502 0.89104 0.97030 0.92443 1.86377 1.45496 1.40731 1.65608 1.45923 1.42208 1.41423 1.06306 1.21128 0.83236 0.83478 0.82232 1.90745 1.45621 1.50111 1.59501 1.20534 1.00756 1.00084 0.90489 1.19243 0.99871 1.00156 0.95146 1.20862 0.98327 0.97108 0.91293 1.20434 1.03359 1.03073 0.95691 1.19923 0.95166 0.94641 0.84072 1.83936 1.50893 1.63008 1.16208 1.21788 1.12455 1.22529 0.92384 0.88304 1.26612 1.01120 0.99144 0.95208 1.70186 1.40708 1.39592 1.05552 0.84649 0.76430 0.77848 0.77278 1.17885 1.19415 1.18434 1.21228 1.05010 1.04682 0.95394 1.20921 0.96506 0.97764 0.92631 0.88351 0.88348 0.91149 0.92177 0.90174 0.89238 0.88996 0.91352 0.95213 0.75559 0.74841 0.85527 0.85421 0.83702 0.87029 0.91819 0.86510 0.84503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.06 13.90 67.78 0.94 -2.12 16 2 C -0.13 -1.80 5.14 -16.48 -0.08 -1.89 16 3 C -0.12 -1.37 9.83 71.24 0.70 -0.67 16 4 C -0.08 -0.95 4.64 29.85 0.14 -0.81 16 5 C 0.15 2.62 2.36 44.99 0.11 2.72 16 6 H 0.08 1.70 7.58 -2.39 -0.02 1.68 16 7 C 0.07 1.08 6.85 71.98 0.49 1.57 16 8 O -0.57 -7.27 12.83 -148.98 -1.91 -9.18 16 9 N -0.71 -11.91 3.89 -442.55 -1.72 -13.63 16 10 C 0.51 12.56 7.79 87.66 0.68 13.24 16 11 O -0.58 -20.93 15.70 -3.03 -0.05 -20.98 16 12 C -0.08 -1.64 5.83 29.10 0.17 -1.47 16 13 C -0.14 -4.67 4.38 -19.84 -0.09 -4.76 16 14 C -0.06 -2.09 9.69 22.25 0.22 -1.87 16 15 C -0.21 -9.45 9.99 22.39 0.22 -9.23 16 16 C 0.11 5.96 6.65 22.58 0.15 6.11 16 17 O -0.23 -14.79 9.76 -22.77 -0.22 -15.01 16 18 C -0.42 -25.33 9.49 67.92 0.64 -24.68 16 19 H 0.10 5.56 5.20 -2.91 -0.02 5.54 16 20 C -0.02 -1.39 5.49 84.83 0.47 -0.93 16 21 N -0.92 -58.45 13.67 21.61 0.30 -58.15 16 22 Si 1.02 44.40 29.55 68.60 2.03 46.43 16 23 H -0.25 -10.32 7.11 99.48 0.71 -9.62 16 24 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 25 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 26 C -0.24 -11.41 9.17 22.39 0.21 -11.20 16 27 C -0.06 -2.23 9.69 22.25 0.22 -2.01 16 28 H 0.10 1.38 7.83 -2.91 -0.02 1.36 16 29 H 0.10 1.35 7.99 -2.91 -0.02 1.33 16 30 H 0.07 0.75 6.35 -2.38 -0.02 0.74 16 31 H 0.06 0.68 7.78 -2.39 -0.02 0.67 16 32 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.09 0.98 7.99 -2.39 -0.02 0.96 16 34 H 0.09 1.03 7.73 -2.39 -0.02 1.02 16 35 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.03 0.63 8.14 -2.38 -0.02 0.61 16 37 H 0.39 2.11 9.12 -74.06 -0.68 1.44 16 38 H 0.41 4.66 7.51 -92.71 -0.70 3.97 16 39 H 0.13 1.84 8.08 -2.39 -0.02 1.82 16 40 H 0.13 1.86 8.08 -2.39 -0.02 1.84 16 41 H 0.15 4.10 8.06 -2.91 -0.02 4.07 16 42 H 0.11 5.04 8.06 -2.92 -0.02 5.02 16 43 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 44 H 0.12 5.53 5.64 -2.91 -0.02 5.51 16 45 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -83.76 381.41 3.25 -80.52 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: -0.36 Total: 28.00 kcal Atomic # 6 Polarization: -43.18 SS G_CDS: 5.18 Total: -38.00 kcal Atomic # 7 Polarization: -70.36 SS G_CDS: -1.42 Total: -71.78 kcal Atomic # 8 Polarization: -42.99 SS G_CDS: -2.18 Total: -45.17 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -83.76 3.25 -80.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882894497.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.215 kcal (2) G-P(sol) polarization free energy of solvation -83.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds