Wall clock time and date at job start Tue Mar 31 2020 12:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99770 * 2 1 4 4 C 1.50701 * 119.99815 * 180.02562 * 2 1 3 5 5 C 1.52991 * 109.47425 * 94.99725 * 4 2 1 6 6 H 1.09008 * 109.46833 * 55.00058 * 5 4 2 7 7 C 1.53000 * 109.47327 * 174.99775 * 5 4 2 8 8 O 1.42903 * 109.47065 * 55.00057 * 7 5 4 9 9 N 1.46498 * 109.47334 * 295.00008 * 5 4 2 10 10 C 1.34783 * 120.00022 * 154.99534 * 9 5 4 11 11 O 1.21282 * 120.00033 * 0.02562 * 10 9 5 12 12 C 1.50697 * 119.99917 * 179.97438 * 10 9 5 13 13 C 1.50698 * 109.47110 * 180.02562 * 12 10 9 14 14 C 1.38320 * 119.96576 * 269.72177 * 13 12 10 15 15 C 1.38279 * 120.14055 * 179.76258 * 14 13 12 16 16 C 1.38121 * 120.06625 * 0.51629 * 15 14 13 17 17 C 1.38860 * 119.93148 * 359.74429 * 16 15 14 18 18 O 1.35755 * 120.06973 * 179.97438 * 17 16 15 19 19 C 1.34832 * 116.99667 * 354.48523 * 18 17 16 20 20 H 1.07995 * 120.00554 * 5.06358 * 19 18 17 21 21 C 1.38660 * 119.99633 * 185.05749 * 19 18 17 22 22 N 1.31556 * 120.00062 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 119.99886 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47255 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47163 * 120.00189 * 23 21 19 26 26 H 1.48499 * 109.47150 * 240.00303 * 23 21 19 27 27 C 1.38085 * 119.96634 * 89.99950 * 13 12 10 28 28 H 1.07997 * 120.00035 * 179.97438 * 1 2 3 29 29 H 1.07996 * 119.99684 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.47487 * 269.99863 * 3 2 1 31 31 H 1.08999 * 109.47172 * 30.00653 * 3 2 1 32 32 H 1.09010 * 109.46497 * 150.00050 * 3 2 1 33 33 H 1.09000 * 109.46707 * 334.99805 * 4 2 1 34 34 H 1.09002 * 109.46459 * 215.00422 * 4 2 1 35 35 H 1.08996 * 109.47219 * 175.00198 * 7 5 4 36 36 H 1.09003 * 109.47185 * 295.00467 * 7 5 4 37 37 H 0.96696 * 113.99751 * 180.02562 * 8 7 5 38 38 H 0.96997 * 119.99933 * 335.00053 * 9 5 4 39 39 H 1.08997 * 109.47091 * 60.00219 * 12 10 9 40 40 H 1.09003 * 109.47227 * 300.00670 * 12 10 9 41 41 H 1.08005 * 119.92876 * 0.02562 * 14 13 12 42 42 H 1.07997 * 119.97151 * 180.25535 * 15 14 13 43 43 H 1.08005 * 120.03714 * 179.71820 * 16 15 14 44 44 H 0.97001 * 120.00070 * 180.02562 * 22 21 19 45 45 H 1.07996 * 120.03129 * 359.95667 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4273 -1.6834 -1.4377 6 1 2.9770 -0.8640 -1.9010 7 6 3.2983 -2.9412 -1.4291 8 8 2.6245 -3.9824 -0.7190 9 7 1.2030 -1.9424 -2.1994 10 6 1.1996 -1.7973 -3.5394 11 8 2.2102 -1.4528 -4.1146 12 6 -0.0596 -2.0643 -4.3229 13 6 0.2021 -1.8320 -5.7887 14 6 -0.0044 -0.5791 -6.3373 15 6 0.2393 -0.3607 -7.6808 16 6 0.6797 -1.3964 -8.4816 17 6 0.8827 -2.6567 -7.9350 18 8 1.3150 -3.6767 -8.7195 19 6 1.4188 -3.4308 -10.0412 20 1 1.2421 -2.4354 -10.4208 21 6 1.7527 -4.4561 -10.9129 22 7 1.9686 -5.6686 -10.4505 23 14 1.8973 -4.1153 -12.7438 24 1 1.6095 -2.6820 -13.0048 25 1 3.2742 -4.4342 -13.1995 26 1 0.9236 -4.9587 -13.4827 27 6 0.6422 -2.8715 -6.5840 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5399 0.9353 0.0004 30 1 2.2452 1.6198 -1.0276 31 1 1.4744 2.0647 0.5139 32 1 3.0160 1.1747 0.5139 33 1 1.4385 -2.0856 0.4334 34 1 2.9742 -1.1991 0.5890 35 1 3.4839 -3.2617 -2.4542 36 1 4.2473 -2.7227 -0.9393 37 1 3.1199 -4.8115 -0.6732 38 1 0.3949 -2.2182 -1.7393 39 1 -0.8481 -1.3927 -3.9834 40 1 -0.3712 -3.0975 -4.1690 41 1 -0.3526 0.2313 -5.7141 42 1 0.0811 0.6196 -8.1054 43 1 0.8655 -1.2264 -9.5318 44 1 2.2026 -6.3858 -11.0603 45 1 0.7996 -3.8504 -6.1558 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882897682.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:30 Heat of formation + Delta-G solvation = -81.595787 kcal Electronic energy + Delta-G solvation = -26240.727221 eV Core-core repulsion = 22417.124669 eV Total energy + Delta-G solvation = -3823.602552 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.02240 -38.87965 -37.70890 -36.35649 -36.23329 -33.99945 -32.36748 -31.99866 -30.40355 -29.08100 -27.62588 -26.91357 -26.32149 -25.17704 -22.21956 -21.51098 -20.76564 -20.16952 -18.85793 -17.67066 -17.57536 -16.96187 -16.70812 -16.14179 -15.52358 -15.04338 -14.82960 -14.66632 -14.52467 -14.33447 -14.01267 -13.99813 -13.65699 -13.40353 -13.27981 -13.05571 -12.68105 -12.38831 -12.30260 -12.14685 -11.93745 -11.75035 -11.47769 -11.44230 -11.22537 -11.07845 -10.78300 -10.70076 -10.54566 -10.38528 -10.26238 -9.63005 -9.27118 -9.26135 -9.02230 -8.78129 -7.98291 -7.14230 -6.38478 -3.97235 1.97565 2.17633 2.47029 2.85645 3.15505 3.17471 3.23149 3.27528 4.01865 4.08689 4.43236 4.60640 4.64957 4.73206 4.99450 5.04397 5.14453 5.17495 5.18622 5.19828 5.30910 5.36012 5.40642 5.51943 5.57960 5.60383 5.67647 5.70173 5.74869 5.83154 5.88159 6.01141 6.25363 6.36633 6.41560 6.48085 6.62573 6.73857 6.99645 7.14621 7.35166 7.38913 7.44395 7.51186 7.58285 7.90952 8.07115 8.41365 9.07600 9.79418 10.80086 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020466 B = 0.002622 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.774245 B =10674.331045 C =11509.471429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.124 4.124 3 C -0.121 4.121 4 C -0.088 4.088 5 C 0.156 3.844 6 H 0.099 0.901 7 C 0.061 3.939 8 O -0.570 6.570 9 N -0.723 5.723 10 C 0.516 3.484 11 O -0.524 6.524 12 C -0.094 4.094 13 C -0.031 4.031 14 C -0.196 4.196 15 C -0.075 4.075 16 C -0.231 4.231 17 C 0.155 3.845 18 O -0.181 6.181 19 C -0.389 4.389 20 H 0.092 0.908 21 C 0.038 3.962 22 N -0.865 5.865 23 Si 0.940 3.060 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.276 1.276 27 C -0.174 4.174 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.379 0.621 38 H 0.399 0.601 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.107 0.893 43 H 0.126 0.874 44 H 0.268 0.732 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.952 8.612 21.608 23.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.124 4.124 3 C -0.178 4.178 4 C -0.125 4.125 5 C 0.051 3.949 6 H 0.117 0.883 7 C -0.018 4.018 8 O -0.376 6.376 9 N -0.376 5.376 10 C 0.303 3.697 11 O -0.399 6.399 12 C -0.134 4.134 13 C -0.032 4.032 14 C -0.215 4.215 15 C -0.093 4.093 16 C -0.251 4.251 17 C 0.102 3.898 18 O -0.085 6.085 19 C -0.466 4.466 20 H 0.109 0.891 21 C -0.166 4.166 22 N -0.501 5.501 23 Si 0.765 3.235 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.202 1.202 27 C -0.194 4.194 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.226 0.774 38 H 0.233 0.767 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.120 0.880 42 H 0.125 0.875 43 H 0.143 0.857 44 H 0.078 0.922 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.520 8.882 21.186 23.022 hybrid contribution 0.186 -0.359 -0.823 0.917 sum -1.334 8.523 20.362 22.114 Atomic orbital electron populations 1.23658 0.95165 1.01762 1.02441 1.21719 0.95526 0.95560 0.99616 1.20880 1.00001 0.94553 1.02342 1.20884 1.01189 0.94819 0.95641 1.20910 0.86622 0.95803 0.91557 0.88287 1.22686 0.94368 0.88454 0.96313 1.86417 1.48965 1.24345 1.77838 1.45965 1.13625 1.71170 1.06861 1.20740 0.90690 0.76598 0.81718 1.90744 1.34612 1.45232 1.69269 1.20584 0.95742 1.04012 0.93072 1.18664 0.98947 0.93583 0.91963 1.20346 1.09901 0.95914 0.95331 1.20672 0.97592 0.97523 0.93547 1.21170 1.09569 0.93363 1.00952 1.19274 0.91393 0.88153 0.91010 1.83979 1.72371 1.33081 1.19054 1.21364 1.49012 0.96991 0.79201 0.89100 1.25272 0.96727 0.94462 1.00139 1.70053 1.43985 1.00547 1.35499 0.85657 0.78236 0.78748 0.80832 1.19135 1.20214 1.20197 1.19941 1.08530 0.99075 0.91833 0.88567 0.88575 0.91299 0.91918 0.91924 0.89836 0.90077 0.92529 0.92997 0.77442 0.76666 0.88490 0.88335 0.87992 0.87533 0.85653 0.92197 0.86914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.49 13.47 29.01 0.39 -1.09 16 2 C -0.12 -1.00 5.08 -101.07 -0.51 -1.52 16 3 C -0.12 -0.90 10.03 36.01 0.36 -0.54 16 4 C -0.09 -0.70 4.64 -27.89 -0.13 -0.83 16 5 C 0.16 1.59 2.36 -67.94 -0.16 1.43 16 6 H 0.10 1.17 7.58 -51.92 -0.39 0.77 16 7 C 0.06 0.60 6.85 37.16 0.25 0.86 16 8 O -0.57 -5.20 12.83 -35.23 -0.45 -5.65 16 9 N -0.72 -7.95 4.57 -53.81 -0.25 -8.19 16 10 C 0.52 7.65 7.79 -10.98 -0.09 7.56 16 11 O -0.52 -10.19 15.70 5.56 0.09 -10.10 16 12 C -0.09 -1.32 5.83 -29.04 -0.17 -1.48 16 13 C -0.03 -0.58 4.37 -104.65 -0.46 -1.04 16 14 C -0.20 -3.65 9.70 -39.54 -0.38 -4.03 16 15 C -0.08 -1.48 10.04 -39.61 -0.40 -1.88 16 16 C -0.23 -5.34 9.17 -39.39 -0.36 -5.70 16 17 C 0.15 3.96 6.65 -39.11 -0.26 3.70 16 18 O -0.18 -5.38 9.76 0.03 0.00 -5.38 16 19 C -0.39 -11.25 9.49 30.89 0.29 -10.95 16 20 H 0.09 2.44 5.20 -52.49 -0.27 2.17 16 21 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 22 N -0.87 -26.00 13.67 55.48 0.76 -25.24 16 23 Si 0.94 21.08 29.55 -169.99 -5.02 16.06 16 24 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 25 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 27 C -0.17 -3.92 9.65 -39.39 -0.38 -4.30 16 28 H 0.10 0.66 7.83 -52.49 -0.41 0.25 16 29 H 0.10 0.69 8.04 -52.49 -0.42 0.27 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.41 8.06 -51.93 -0.42 -0.01 16 32 H 0.06 0.40 8.09 -51.92 -0.42 -0.02 16 33 H 0.08 0.68 7.57 -51.93 -0.39 0.29 16 34 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.38 2.11 9.12 45.56 0.42 2.52 16 38 H 0.40 3.54 8.22 -40.82 -0.34 3.21 16 39 H 0.10 1.07 8.08 -51.93 -0.42 0.65 16 40 H 0.10 1.21 8.08 -51.93 -0.42 0.79 16 41 H 0.10 1.61 8.06 -52.48 -0.42 1.19 16 42 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 43 H 0.13 2.88 5.64 -52.48 -0.30 2.58 16 44 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.11 2.47 8.06 -52.49 -0.42 2.05 16 LS Contribution 384.51 15.07 5.79 5.79 Total: -1.00 -35.49 384.51 -7.05 -42.55 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -5.88 Total: 9.01 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: -2.09 Total: -18.85 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: 0.51 Total: -33.43 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.36 Total: -21.12 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.49 -7.05 -42.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882897682.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.050 kcal (2) G-P(sol) polarization free energy of solvation -35.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds