Wall clock time and date at job start Tue Mar 31 2020 12:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99770 * 2 1 4 4 C 1.50701 * 119.99815 * 180.02562 * 2 1 3 5 5 C 1.52991 * 109.47425 * 94.99725 * 4 2 1 6 6 H 1.09008 * 109.46833 * 55.00058 * 5 4 2 7 7 C 1.53000 * 109.47327 * 174.99775 * 5 4 2 8 8 O 1.42903 * 109.47065 * 55.00057 * 7 5 4 9 9 N 1.46498 * 109.47334 * 295.00008 * 5 4 2 10 10 C 1.34783 * 120.00022 * 154.99534 * 9 5 4 11 11 O 1.21282 * 120.00033 * 0.02562 * 10 9 5 12 12 C 1.50697 * 119.99917 * 179.97438 * 10 9 5 13 13 C 1.50698 * 109.47110 * 180.02562 * 12 10 9 14 14 C 1.38320 * 119.96576 * 269.72177 * 13 12 10 15 15 C 1.38279 * 120.14055 * 179.76258 * 14 13 12 16 16 C 1.38121 * 120.06625 * 0.51629 * 15 14 13 17 17 C 1.38860 * 119.93148 * 359.74429 * 16 15 14 18 18 O 1.35755 * 120.06973 * 179.97438 * 17 16 15 19 19 C 1.34832 * 116.99667 * 354.48523 * 18 17 16 20 20 H 1.07995 * 120.00554 * 5.06358 * 19 18 17 21 21 C 1.38660 * 119.99633 * 185.05749 * 19 18 17 22 22 N 1.31556 * 120.00062 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 119.99886 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47255 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47163 * 120.00189 * 23 21 19 26 26 H 1.48499 * 109.47150 * 240.00303 * 23 21 19 27 27 C 1.38085 * 119.96634 * 89.99950 * 13 12 10 28 28 H 1.07997 * 120.00035 * 179.97438 * 1 2 3 29 29 H 1.07996 * 119.99684 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.47487 * 269.99863 * 3 2 1 31 31 H 1.08999 * 109.47172 * 30.00653 * 3 2 1 32 32 H 1.09010 * 109.46497 * 150.00050 * 3 2 1 33 33 H 1.09000 * 109.46707 * 334.99805 * 4 2 1 34 34 H 1.09002 * 109.46459 * 215.00422 * 4 2 1 35 35 H 1.08996 * 109.47219 * 175.00198 * 7 5 4 36 36 H 1.09003 * 109.47185 * 295.00467 * 7 5 4 37 37 H 0.96696 * 113.99751 * 180.02562 * 8 7 5 38 38 H 0.96997 * 119.99933 * 335.00053 * 9 5 4 39 39 H 1.08997 * 109.47091 * 60.00219 * 12 10 9 40 40 H 1.09003 * 109.47227 * 300.00670 * 12 10 9 41 41 H 1.08005 * 119.92876 * 0.02562 * 14 13 12 42 42 H 1.07997 * 119.97151 * 180.25535 * 15 14 13 43 43 H 1.08005 * 120.03714 * 179.71820 * 16 15 14 44 44 H 0.97001 * 120.00070 * 180.02562 * 22 21 19 45 45 H 1.07996 * 120.03129 * 359.95667 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4273 -1.6834 -1.4377 6 1 2.9770 -0.8640 -1.9010 7 6 3.2983 -2.9412 -1.4291 8 8 2.6245 -3.9824 -0.7190 9 7 1.2030 -1.9424 -2.1994 10 6 1.1996 -1.7973 -3.5394 11 8 2.2102 -1.4528 -4.1146 12 6 -0.0596 -2.0643 -4.3229 13 6 0.2021 -1.8320 -5.7887 14 6 -0.0044 -0.5791 -6.3373 15 6 0.2393 -0.3607 -7.6808 16 6 0.6797 -1.3964 -8.4816 17 6 0.8827 -2.6567 -7.9350 18 8 1.3150 -3.6767 -8.7195 19 6 1.4188 -3.4308 -10.0412 20 1 1.2421 -2.4354 -10.4208 21 6 1.7527 -4.4561 -10.9129 22 7 1.9686 -5.6686 -10.4505 23 14 1.8973 -4.1153 -12.7438 24 1 1.6095 -2.6820 -13.0048 25 1 3.2742 -4.4342 -13.1995 26 1 0.9236 -4.9587 -13.4827 27 6 0.6422 -2.8715 -6.5840 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5399 0.9353 0.0004 30 1 2.2452 1.6198 -1.0276 31 1 1.4744 2.0647 0.5139 32 1 3.0160 1.1747 0.5139 33 1 1.4385 -2.0856 0.4334 34 1 2.9742 -1.1991 0.5890 35 1 3.4839 -3.2617 -2.4542 36 1 4.2473 -2.7227 -0.9393 37 1 3.1199 -4.8115 -0.6732 38 1 0.3949 -2.2182 -1.7393 39 1 -0.8481 -1.3927 -3.9834 40 1 -0.3712 -3.0975 -4.1690 41 1 -0.3526 0.2313 -5.7141 42 1 0.0811 0.6196 -8.1054 43 1 0.8655 -1.2264 -9.5318 44 1 2.2026 -6.3858 -11.0603 45 1 0.7996 -3.8504 -6.1558 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882897682.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:29 Heat of formation + Delta-G solvation = -107.547595 kcal Electronic energy + Delta-G solvation = -26241.852576 eV Core-core repulsion = 22417.124669 eV Total energy + Delta-G solvation = -3824.727907 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.23136 -40.53151 -38.78627 -37.99820 -36.91958 -34.93010 -34.34382 -33.50626 -31.42944 -30.77886 -28.32612 -28.19528 -27.23472 -27.02362 -23.51536 -23.12814 -22.09045 -21.34845 -19.65453 -19.37885 -18.76682 -18.43424 -17.81660 -17.09507 -16.83100 -16.58277 -16.14856 -16.06596 -15.66250 -15.47362 -15.25407 -15.15101 -14.98229 -14.65025 -14.46585 -14.32592 -13.99567 -13.78620 -13.60763 -13.20876 -12.97628 -12.85852 -12.76325 -12.48239 -12.47616 -12.36310 -12.22375 -12.15439 -12.08299 -11.73575 -11.20520 -11.07991 -10.85638 -10.78049 -10.05482 -9.84416 -9.63074 -8.97676 -8.47398 -6.15891 0.52536 0.75969 1.33724 1.38145 1.42629 1.52640 1.70984 2.17254 2.24867 2.85378 3.18277 3.37216 3.44678 3.75005 3.83004 3.96905 4.06516 4.10457 4.18303 4.30492 4.32475 4.42378 4.44460 4.54605 4.58701 4.64260 4.71051 4.73410 4.74168 4.83648 4.89657 5.07089 5.10427 5.13166 5.14426 5.18633 5.31022 5.54009 5.65393 5.72989 5.75927 5.80844 6.02678 6.02921 6.23656 6.62172 6.81657 6.97284 7.33999 7.79130 8.76563 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020466 B = 0.002622 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.774245 B =10674.331045 C =11509.471429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.138 4.138 3 C -0.121 4.121 4 C -0.076 4.076 5 C 0.153 3.847 6 H 0.082 0.918 7 C 0.065 3.935 8 O -0.576 6.576 9 N -0.703 5.703 10 C 0.516 3.484 11 O -0.579 6.579 12 C -0.093 4.093 13 C -0.024 4.024 14 C -0.180 4.180 15 C -0.073 4.073 16 C -0.247 4.247 17 C 0.113 3.887 18 O -0.235 6.235 19 C -0.413 4.413 20 H 0.100 0.900 21 C -0.025 4.025 22 N -0.923 5.923 23 Si 1.021 2.979 24 H -0.252 1.252 25 H -0.269 1.269 26 H -0.266 1.266 27 C -0.193 4.193 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.023 0.977 36 H 0.073 0.927 37 H 0.394 0.606 38 H 0.413 0.587 39 H 0.141 0.859 40 H 0.117 0.883 41 H 0.146 0.854 42 H 0.145 0.855 43 H 0.118 0.882 44 H 0.272 0.728 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.434 10.896 23.507 26.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.138 4.138 3 C -0.178 4.178 4 C -0.113 4.113 5 C 0.048 3.952 6 H 0.100 0.900 7 C -0.014 4.014 8 O -0.383 6.383 9 N -0.356 5.356 10 C 0.304 3.696 11 O -0.458 6.458 12 C -0.132 4.132 13 C -0.024 4.024 14 C -0.199 4.199 15 C -0.091 4.091 16 C -0.266 4.266 17 C 0.063 3.937 18 O -0.142 6.142 19 C -0.489 4.489 20 H 0.117 0.883 21 C -0.222 4.222 22 N -0.561 5.561 23 Si 0.840 3.160 24 H -0.175 1.175 25 H -0.194 1.194 26 H -0.191 1.191 27 C -0.212 4.212 28 H 0.124 0.876 29 H 0.119 0.881 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.111 0.889 35 H 0.041 0.959 36 H 0.091 0.909 37 H 0.244 0.756 38 H 0.250 0.750 39 H 0.159 0.841 40 H 0.135 0.865 41 H 0.164 0.836 42 H 0.163 0.837 43 H 0.136 0.864 44 H 0.081 0.919 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.041 11.183 23.172 25.909 hybrid contribution 0.556 -0.918 -1.082 1.524 sum -2.486 10.266 22.090 24.485 Atomic orbital electron populations 1.23837 0.95092 1.02497 1.01398 1.21815 0.95870 0.95668 1.00468 1.20887 1.00580 0.94603 1.01750 1.20793 1.01854 0.94886 0.93809 1.20991 0.86084 0.95447 0.92675 0.90011 1.22555 0.95404 0.88570 0.94847 1.86368 1.49530 1.25088 1.77351 1.45810 1.14589 1.69446 1.05746 1.20836 0.90078 0.75974 0.82721 1.90738 1.36406 1.48175 1.70476 1.20691 0.96536 1.06439 0.89518 1.19177 0.96272 0.92650 0.94324 1.20957 1.06950 0.96677 0.95267 1.21128 0.95913 0.98114 0.93936 1.21291 1.10546 0.93542 1.01232 1.19859 0.93152 0.88682 0.92016 1.83938 1.75242 1.35312 1.19721 1.21867 1.49580 0.97835 0.79654 0.88253 1.26620 0.95919 0.93940 1.05690 1.70198 1.46330 1.01912 1.37686 0.84508 0.78617 0.79417 0.73496 1.17524 1.19356 1.19061 1.20197 1.09526 1.00196 0.91316 0.87641 0.88114 0.92542 0.91158 0.91196 0.89527 0.88873 0.95878 0.90891 0.75616 0.75033 0.84121 0.86513 0.83611 0.83682 0.86449 0.91852 0.87803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.34 13.47 67.78 0.91 -1.43 16 2 C -0.14 -1.88 5.08 -16.49 -0.08 -1.96 16 3 C -0.12 -1.56 10.03 71.24 0.71 -0.85 16 4 C -0.08 -1.02 4.64 29.85 0.14 -0.88 16 5 C 0.15 2.90 2.36 44.99 0.11 3.00 16 6 H 0.08 1.88 7.58 -2.38 -0.02 1.86 16 7 C 0.07 1.24 6.85 71.98 0.49 1.74 16 8 O -0.58 -9.47 12.83 -148.98 -1.91 -11.38 16 9 N -0.70 -13.95 4.57 -442.54 -2.02 -15.97 16 10 C 0.52 14.42 7.79 87.66 0.68 15.10 16 11 O -0.58 -22.41 15.70 -3.04 -0.05 -22.46 16 12 C -0.09 -2.30 5.83 29.10 0.17 -2.13 16 13 C -0.02 -0.85 4.37 -19.88 -0.09 -0.94 16 14 C -0.18 -6.09 9.70 22.30 0.22 -5.88 16 15 C -0.07 -2.72 10.04 22.25 0.22 -2.50 16 16 C -0.25 -11.61 9.17 22.39 0.21 -11.41 16 17 C 0.11 6.06 6.65 22.58 0.15 6.21 16 18 O -0.24 -14.98 9.76 -22.81 -0.22 -15.20 16 19 C -0.41 -25.22 9.49 67.92 0.64 -24.57 16 20 H 0.10 5.61 5.20 -2.91 -0.02 5.59 16 21 C -0.02 -1.46 5.49 84.84 0.47 -0.99 16 22 N -0.92 -58.47 13.67 21.61 0.30 -58.17 16 23 Si 1.02 44.40 29.55 68.60 2.03 46.42 16 24 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 25 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 26 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 27 C -0.19 -8.95 9.65 22.39 0.22 -8.74 16 28 H 0.11 1.07 7.83 -2.91 -0.02 1.04 16 29 H 0.10 1.14 8.04 -2.91 -0.02 1.12 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 0.78 8.06 -2.39 -0.02 0.76 16 32 H 0.07 0.77 8.09 -2.38 -0.02 0.75 16 33 H 0.09 1.15 7.57 -2.39 -0.02 1.13 16 34 H 0.09 1.05 8.10 -2.39 -0.02 1.03 16 35 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.39 3.77 9.12 -74.06 -0.68 3.09 16 38 H 0.41 5.98 8.22 -92.71 -0.76 5.22 16 39 H 0.14 2.31 8.08 -2.39 -0.02 2.29 16 40 H 0.12 2.53 8.08 -2.39 -0.02 2.51 16 41 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 42 H 0.15 4.26 8.06 -2.91 -0.02 4.23 16 43 H 0.12 5.57 5.64 -2.91 -0.02 5.56 16 44 H 0.27 15.71 8.31 -92.71 -0.77 14.93 16 45 H 0.10 4.84 8.06 -2.91 -0.02 4.82 16 Total: -1.00 -83.93 384.51 2.86 -81.07 By element: Atomic # 1 Polarization: 32.35 SS G_CDS: -0.43 Total: 31.92 kcal Atomic # 6 Polarization: -41.40 SS G_CDS: 5.17 Total: -36.23 kcal Atomic # 7 Polarization: -72.41 SS G_CDS: -1.73 Total: -74.14 kcal Atomic # 8 Polarization: -46.86 SS G_CDS: -2.18 Total: -49.04 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -83.93 2.86 -81.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882897682.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.481 kcal (2) G-P(sol) polarization free energy of solvation -83.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds