Wall clock time and date at job start Tue Mar 31 2020 12:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47279 * 2 1 4 4 C 1.52997 * 109.47193 * 240.00409 * 2 1 3 5 5 C 1.52997 * 109.47233 * 120.00297 * 2 1 3 6 6 H 1.08998 * 109.47179 * 299.99804 * 5 2 1 7 7 C 1.50707 * 109.46994 * 180.02562 * 5 2 1 8 8 O 1.20828 * 119.99684 * 239.99563 * 7 5 2 9 9 O 1.34227 * 120.00237 * 60.00150 * 7 5 2 10 10 C 1.50700 * 109.46987 * 60.00088 * 5 2 1 11 11 O 1.21281 * 120.00122 * 0.02562 * 10 5 2 12 12 N 1.34783 * 119.99763 * 180.02562 * 10 5 2 13 13 C 1.39920 * 119.99800 * 184.63474 * 12 10 5 14 14 C 1.38874 * 120.07304 * 144.90875 * 13 12 10 15 15 C 1.38112 * 119.93332 * 180.29886 * 14 13 12 16 16 C 1.38288 * 120.06554 * 359.42352 * 15 14 13 17 17 C 1.50692 * 119.92798 * 180.32488 * 16 15 14 18 18 C 1.50702 * 109.47177 * 270.27767 * 17 16 15 19 19 H 1.08003 * 120.00179 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00322 * 180.02562 * 18 17 16 21 21 N 1.31513 * 119.99958 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00178 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46933 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47418 * 120.00145 * 22 20 18 25 25 H 1.48500 * 109.47105 * 240.00242 * 22 20 18 26 26 C 1.38288 * 120.14199 * 0.60072 * 16 15 14 27 27 C 1.38110 * 120.06778 * 359.67613 * 26 16 15 28 28 H 1.08998 * 109.46878 * 299.99715 * 1 2 3 29 29 H 1.09004 * 109.47106 * 59.99551 * 1 2 3 30 30 H 1.08992 * 109.47071 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47310 * 179.97438 * 3 2 1 32 32 H 1.09004 * 109.47418 * 300.00258 * 3 2 1 33 33 H 1.09006 * 109.46735 * 60.00062 * 3 2 1 34 34 H 1.09005 * 109.47135 * 300.00057 * 4 2 1 35 35 H 1.09004 * 109.47061 * 60.00013 * 4 2 1 36 36 H 1.09000 * 109.47680 * 179.97438 * 4 2 1 37 37 H 0.96699 * 117.00193 * 179.97438 * 9 7 5 38 38 H 0.96994 * 119.99686 * 4.62682 * 12 10 5 39 39 H 1.08001 * 120.03274 * 0.02569 * 14 13 12 40 40 H 1.07993 * 119.96783 * 179.70054 * 15 14 13 41 41 H 1.08997 * 109.47395 * 30.27568 * 17 16 15 42 42 H 1.09003 * 109.47719 * 150.27770 * 17 16 15 43 43 H 0.97000 * 119.99926 * 180.02562 * 21 20 18 44 44 H 1.07996 * 119.96386 * 179.70191 * 26 16 15 45 45 H 1.08005 * 120.03452 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 1.6767 -0.2075 2.1392 7 6 3.5471 -0.7207 1.2494 8 8 4.1516 -1.7669 1.2494 9 8 4.2178 0.4420 1.2498 10 6 1.5377 -2.1421 1.2491 11 8 0.8408 -2.5389 0.3392 12 7 1.8629 -2.9719 2.2601 13 6 1.4786 -4.3165 2.2129 14 6 2.3090 -5.2966 2.7404 15 6 1.9296 -6.6235 2.6866 16 6 0.7187 -6.9753 2.1189 17 6 0.3045 -8.4234 2.0685 18 6 0.8051 -9.0448 0.7901 19 1 1.3666 -8.4505 0.0844 20 6 0.5454 -10.3718 0.5207 21 7 -0.1397 -11.0952 1.3792 22 14 1.1652 -11.1419 -1.0643 23 1 1.9029 -10.1233 -1.8540 24 1 2.0737 -12.2719 -0.7434 25 1 0.0125 -11.6427 -1.8552 26 6 -0.1103 -6.0018 1.5923 27 6 0.2660 -4.6738 1.6378 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8901 34 1 1.6766 -1.7488 -1.2493 35 1 1.6767 -0.2072 -2.1392 36 1 3.1300 -0.7208 -1.2496 37 1 5.1835 0.3917 1.2504 38 1 2.3635 -2.6370 3.0204 39 1 3.2526 -5.0219 3.1883 40 1 2.5771 -7.3866 3.0924 41 1 0.7301 -8.9529 2.9208 42 1 -0.7828 -8.4918 2.1043 43 1 -0.3221 -12.0289 1.1898 44 1 -1.0531 -6.2803 1.1452 45 1 -0.3817 -3.9139 1.2260 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902839503.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:47 Heat of formation + Delta-G solvation = -109.269374 kcal Electronic energy + Delta-G solvation = -27061.143952 eV Core-core repulsion = 23236.341384 eV Total energy + Delta-G solvation = -3824.802569 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.65158 -39.94386 -38.48405 -36.94907 -36.42476 -34.85298 -33.02780 -30.95788 -30.27141 -29.50827 -27.52769 -27.44834 -26.48718 -23.66891 -22.75736 -22.33383 -21.03800 -20.03278 -19.52595 -18.41137 -17.73434 -17.11155 -17.00612 -16.27082 -16.10112 -15.12837 -14.91515 -14.82726 -14.44184 -14.19220 -14.04355 -13.99076 -13.42555 -13.14850 -12.89970 -12.79880 -12.58550 -12.37674 -12.28364 -12.09693 -11.86465 -11.62722 -11.50864 -11.31779 -11.22134 -11.10875 -11.03221 -10.77990 -10.76303 -10.54516 -10.32003 -9.98131 -9.62227 -9.38655 -9.21461 -8.39228 -8.25458 -7.37322 -6.00631 -4.04171 1.70510 1.78551 2.09076 2.22193 2.93868 2.98571 3.32634 3.40110 3.46642 4.02440 4.30013 4.42137 4.46219 4.59455 4.76310 4.83834 4.93439 5.08835 5.33646 5.40495 5.48674 5.50871 5.61603 5.64050 5.69445 5.79304 5.83876 5.90927 6.00663 6.04019 6.07439 6.13745 6.23021 6.25793 6.35424 6.68366 6.79173 6.92333 7.19646 7.22944 7.42119 7.45856 7.54255 7.73141 7.89346 7.95777 8.08776 8.36368 9.01736 9.59719 11.08998 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020448 B = 0.002814 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.028999 B = 9947.690643 C =10127.392487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.040 4.040 3 C -0.153 4.153 4 C -0.160 4.160 5 C -0.097 4.097 6 H 0.133 0.867 7 C 0.489 3.511 8 O -0.496 6.496 9 O -0.505 6.505 10 C 0.529 3.471 11 O -0.497 6.497 12 N -0.653 5.653 13 C 0.103 3.897 14 C -0.138 4.138 15 C -0.109 4.109 16 C -0.041 4.041 17 C 0.048 3.952 18 C -0.509 4.509 19 H 0.058 0.942 20 C 0.057 3.943 21 N -0.895 5.895 22 Si 0.894 3.106 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.283 1.283 26 C -0.110 4.110 27 C -0.117 4.117 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.090 0.910 35 H 0.060 0.940 36 H 0.043 0.957 37 H 0.409 0.591 38 H 0.403 0.597 39 H 0.114 0.886 40 H 0.122 0.878 41 H 0.029 0.971 42 H 0.029 0.971 43 H 0.261 0.739 44 H 0.121 0.879 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.627 27.577 2.408 28.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.041 4.041 3 C -0.210 4.210 4 C -0.217 4.217 5 C -0.119 4.119 6 H 0.151 0.849 7 C 0.329 3.671 8 O -0.382 6.382 9 O -0.317 6.317 10 C 0.315 3.685 11 O -0.372 6.372 12 N -0.295 5.295 13 C 0.011 3.989 14 C -0.158 4.158 15 C -0.128 4.128 16 C -0.041 4.041 17 C 0.011 3.989 18 C -0.548 4.548 19 H 0.076 0.924 20 C -0.144 4.144 21 N -0.534 5.534 22 Si 0.722 3.278 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.209 1.209 26 C -0.129 4.129 27 C -0.137 4.137 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.109 0.891 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.269 0.731 38 H 0.238 0.762 39 H 0.132 0.868 40 H 0.140 0.860 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.071 0.929 44 H 0.139 0.861 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.819 26.880 1.758 27.365 hybrid contribution 1.408 -0.302 -0.416 1.499 sum 6.227 26.578 1.343 27.331 Atomic orbital electron populations 1.22133 0.92607 1.04762 1.01602 1.20299 0.97230 0.94881 0.91686 1.22171 1.02841 0.93981 1.02020 1.22211 0.99849 1.03440 0.96201 1.21473 0.89058 0.96775 1.04607 0.84943 1.22799 0.90594 0.81438 0.72236 1.90855 1.70107 1.32874 1.44363 1.84619 1.26728 1.35049 1.85348 1.19647 0.80895 0.85926 0.82035 1.90633 1.36430 1.75282 1.34831 1.43214 1.55721 1.08524 1.22089 1.17496 0.94854 0.81947 1.04616 1.20768 0.98419 0.92679 1.03916 1.20886 0.96884 0.94474 1.00530 1.20726 0.92867 0.98318 0.92210 1.18356 0.97316 0.85464 0.97787 1.21127 1.34630 0.95103 1.03898 0.92391 1.25008 0.95206 0.97225 0.96929 1.69968 1.39864 1.08002 1.35609 0.86492 0.78634 0.79221 0.83479 1.19634 1.20973 1.20934 1.21005 1.00434 0.91619 0.99843 1.21099 0.94822 0.97004 1.00760 0.93014 0.92128 0.89340 0.90357 0.92113 0.92444 0.89113 0.92063 0.93838 0.73124 0.76207 0.86820 0.86026 0.95324 0.95289 0.92946 0.86080 0.85342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 8.18 37.16 0.30 -1.07 16 2 C -0.04 -0.35 0.54 -154.51 -0.08 -0.44 16 3 C -0.15 -1.02 7.95 37.16 0.30 -0.73 16 4 C -0.16 -1.72 7.93 37.16 0.29 -1.43 16 5 C -0.10 -0.87 2.04 -92.92 -0.19 -1.06 16 6 H 0.13 0.79 8.14 -51.93 -0.42 0.37 16 7 C 0.49 4.47 6.21 36.01 0.22 4.69 16 8 O -0.50 -6.36 16.24 -18.75 -0.30 -6.67 16 9 O -0.50 -2.86 10.34 -39.25 -0.41 -3.27 16 10 C 0.53 6.84 5.91 -10.98 -0.06 6.77 16 11 O -0.50 -7.80 8.78 5.56 0.05 -7.75 16 12 N -0.65 -8.60 4.66 -9.86 -0.05 -8.65 16 13 C 0.10 1.74 6.30 -83.69 -0.53 1.21 16 14 C -0.14 -2.37 9.97 -39.39 -0.39 -2.77 16 15 C -0.11 -2.17 9.69 -39.61 -0.38 -2.55 16 16 C -0.04 -0.91 5.07 -104.59 -0.53 -1.44 16 17 C 0.05 1.24 5.10 -29.04 -0.15 1.09 16 18 C -0.51 -14.60 9.09 -34.44 -0.31 -14.91 16 19 H 0.06 1.68 7.74 -52.48 -0.41 1.27 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 21 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 22 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 23 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 26 C -0.11 -2.27 9.69 -39.61 -0.38 -2.65 16 27 C -0.12 -2.15 8.70 -39.39 -0.34 -2.49 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.09 1.02 5.51 -51.93 -0.29 0.73 16 31 H 0.08 0.52 5.32 -51.93 -0.28 0.24 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.09 1.26 5.51 -51.93 -0.29 0.97 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.04 0.47 7.22 -51.93 -0.37 0.09 16 37 H 0.41 0.81 9.10 45.56 0.41 1.23 16 38 H 0.40 4.12 8.70 -40.82 -0.36 3.77 16 39 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 40 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 41 H 0.03 0.77 8.09 -51.93 -0.42 0.35 16 42 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 45 H 0.13 2.26 6.22 -52.48 -0.33 1.93 16 LS Contribution 364.84 15.07 5.50 5.50 Total: -1.00 -34.27 364.84 -7.51 -41.78 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -5.68 Total: 4.29 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: -2.34 Total: -16.22 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.69 Total: -34.69 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.66 Total: -17.69 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.27 -7.51 -41.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902839503.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.491 kcal (2) G-P(sol) polarization free energy of solvation -34.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds