Wall clock time and date at job start Tue Mar 31 2020 12:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47279 * 2 1 4 4 C 1.52997 * 109.47193 * 240.00409 * 2 1 3 5 5 C 1.52997 * 109.47233 * 120.00297 * 2 1 3 6 6 H 1.08998 * 109.47179 * 299.99804 * 5 2 1 7 7 C 1.50707 * 109.46994 * 180.02562 * 5 2 1 8 8 O 1.20828 * 119.99684 * 239.99563 * 7 5 2 9 9 O 1.34227 * 120.00237 * 60.00150 * 7 5 2 10 10 C 1.50700 * 109.46987 * 60.00088 * 5 2 1 11 11 O 1.21281 * 120.00122 * 0.02562 * 10 5 2 12 12 N 1.34783 * 119.99763 * 180.02562 * 10 5 2 13 13 C 1.39920 * 119.99800 * 184.63474 * 12 10 5 14 14 C 1.38874 * 120.07304 * 144.90875 * 13 12 10 15 15 C 1.38112 * 119.93332 * 180.29886 * 14 13 12 16 16 C 1.38288 * 120.06554 * 359.42352 * 15 14 13 17 17 C 1.50692 * 119.92798 * 180.32488 * 16 15 14 18 18 C 1.50702 * 109.47177 * 270.27767 * 17 16 15 19 19 H 1.08003 * 120.00179 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00322 * 180.02562 * 18 17 16 21 21 N 1.31513 * 119.99958 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00178 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46933 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47418 * 120.00145 * 22 20 18 25 25 H 1.48500 * 109.47105 * 240.00242 * 22 20 18 26 26 C 1.38288 * 120.14199 * 0.60072 * 16 15 14 27 27 C 1.38110 * 120.06778 * 359.67613 * 26 16 15 28 28 H 1.08998 * 109.46878 * 299.99715 * 1 2 3 29 29 H 1.09004 * 109.47106 * 59.99551 * 1 2 3 30 30 H 1.08992 * 109.47071 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47310 * 179.97438 * 3 2 1 32 32 H 1.09004 * 109.47418 * 300.00258 * 3 2 1 33 33 H 1.09006 * 109.46735 * 60.00062 * 3 2 1 34 34 H 1.09005 * 109.47135 * 300.00057 * 4 2 1 35 35 H 1.09004 * 109.47061 * 60.00013 * 4 2 1 36 36 H 1.09000 * 109.47680 * 179.97438 * 4 2 1 37 37 H 0.96699 * 117.00193 * 179.97438 * 9 7 5 38 38 H 0.96994 * 119.99686 * 4.62682 * 12 10 5 39 39 H 1.08001 * 120.03274 * 0.02569 * 14 13 12 40 40 H 1.07993 * 119.96783 * 179.70054 * 15 14 13 41 41 H 1.08997 * 109.47395 * 30.27568 * 17 16 15 42 42 H 1.09003 * 109.47719 * 150.27770 * 17 16 15 43 43 H 0.97000 * 119.99926 * 180.02562 * 21 20 18 44 44 H 1.07996 * 119.96386 * 179.70191 * 26 16 15 45 45 H 1.08005 * 120.03452 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 1.6767 -0.2075 2.1392 7 6 3.5471 -0.7207 1.2494 8 8 4.1516 -1.7669 1.2494 9 8 4.2178 0.4420 1.2498 10 6 1.5377 -2.1421 1.2491 11 8 0.8408 -2.5389 0.3392 12 7 1.8629 -2.9719 2.2601 13 6 1.4786 -4.3165 2.2129 14 6 2.3090 -5.2966 2.7404 15 6 1.9296 -6.6235 2.6866 16 6 0.7187 -6.9753 2.1189 17 6 0.3045 -8.4234 2.0685 18 6 0.8051 -9.0448 0.7901 19 1 1.3666 -8.4505 0.0844 20 6 0.5454 -10.3718 0.5207 21 7 -0.1397 -11.0952 1.3792 22 14 1.1652 -11.1419 -1.0643 23 1 1.9029 -10.1233 -1.8540 24 1 2.0737 -12.2719 -0.7434 25 1 0.0125 -11.6427 -1.8552 26 6 -0.1103 -6.0018 1.5923 27 6 0.2660 -4.6738 1.6378 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8901 34 1 1.6766 -1.7488 -1.2493 35 1 1.6767 -0.2072 -2.1392 36 1 3.1300 -0.7208 -1.2496 37 1 5.1835 0.3917 1.2504 38 1 2.3635 -2.6370 3.0204 39 1 3.2526 -5.0219 3.1883 40 1 2.5771 -7.3866 3.0924 41 1 0.7301 -8.9529 2.9208 42 1 -0.7828 -8.4918 2.1043 43 1 -0.3221 -12.0289 1.1898 44 1 -1.0531 -6.2803 1.1452 45 1 -0.3817 -3.9139 1.2260 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902839503.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:46 Heat of formation + Delta-G solvation = -130.993859 kcal Electronic energy + Delta-G solvation = -27062.085997 eV Core-core repulsion = 23236.341384 eV Total energy + Delta-G solvation = -3825.744613 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.50953 -40.94369 -39.75351 -37.82790 -37.10169 -36.18106 -35.01194 -32.50448 -31.78671 -30.63955 -28.33608 -28.21501 -28.02908 -25.31491 -23.92872 -23.68144 -22.32558 -21.37684 -20.32421 -19.06490 -18.71398 -18.52822 -18.23241 -17.78086 -16.88176 -16.83914 -16.12706 -15.97979 -15.85812 -15.41052 -15.06555 -14.70628 -14.66450 -14.53596 -14.28522 -14.00179 -13.90399 -13.60137 -13.34817 -13.19468 -12.97210 -12.92822 -12.67993 -12.62437 -12.49241 -12.35136 -12.25671 -11.95186 -11.80855 -11.69248 -11.61401 -11.51641 -11.48115 -10.93650 -10.63272 -10.57514 -9.76971 -8.89894 -8.20198 -6.34448 0.40167 0.56270 1.03510 1.23744 1.37294 1.37893 1.51818 1.94127 2.17471 2.38722 2.99014 3.08815 3.23184 3.53892 3.79519 4.04033 4.12306 4.15442 4.19361 4.32208 4.37723 4.40492 4.60436 4.63725 4.70063 4.77602 4.84475 4.94241 5.07193 5.10948 5.13912 5.20325 5.30576 5.32731 5.37130 5.42017 5.45745 5.49355 5.53767 5.58266 5.67718 5.74994 6.07076 6.11258 6.23821 6.37262 6.78093 6.89837 7.05814 7.33937 8.87815 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020448 B = 0.002814 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.028999 B = 9947.690643 C =10127.392487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.037 4.037 3 C -0.147 4.147 4 C -0.159 4.159 5 C -0.092 4.092 6 H 0.173 0.827 7 C 0.500 3.500 8 O -0.538 6.538 9 O -0.488 6.488 10 C 0.524 3.476 11 O -0.527 6.527 12 N -0.647 5.647 13 C 0.119 3.881 14 C -0.130 4.130 15 C -0.115 4.115 16 C -0.073 4.073 17 C 0.058 3.942 18 C -0.529 4.529 19 H 0.049 0.951 20 C 0.006 3.994 21 N -0.928 5.928 22 Si 0.964 3.036 23 H -0.270 1.270 24 H -0.273 1.273 25 H -0.275 1.275 26 C -0.120 4.120 27 C -0.119 4.119 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.040 0.960 37 H 0.429 0.571 38 H 0.421 0.579 39 H 0.148 0.852 40 H 0.124 0.876 41 H 0.008 0.992 42 H 0.003 0.997 43 H 0.266 0.734 44 H 0.113 0.887 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.259 30.861 2.376 31.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.038 4.038 3 C -0.204 4.204 4 C -0.216 4.216 5 C -0.114 4.114 6 H 0.190 0.810 7 C 0.342 3.658 8 O -0.427 6.427 9 O -0.302 6.302 10 C 0.311 3.689 11 O -0.403 6.403 12 N -0.291 5.291 13 C 0.025 3.975 14 C -0.150 4.150 15 C -0.134 4.134 16 C -0.074 4.074 17 C 0.021 3.979 18 C -0.567 4.567 19 H 0.067 0.933 20 C -0.192 4.192 21 N -0.568 5.568 22 Si 0.788 3.212 23 H -0.194 1.194 24 H -0.198 1.198 25 H -0.200 1.200 26 C -0.139 4.139 27 C -0.139 4.139 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.059 0.941 37 H 0.292 0.708 38 H 0.259 0.741 39 H 0.166 0.834 40 H 0.142 0.858 41 H 0.026 0.974 42 H 0.022 0.978 43 H 0.075 0.925 44 H 0.131 0.869 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.478 30.224 1.746 30.960 hybrid contribution 0.918 -1.161 -0.413 1.537 sum 7.396 29.063 1.333 30.019 Atomic orbital electron populations 1.22087 0.92745 1.03189 1.02923 1.20313 0.97079 0.96030 0.90371 1.22127 1.02954 0.92088 1.03222 1.22169 0.99588 1.01790 0.98079 1.21491 0.89403 0.93972 1.06516 0.80981 1.22659 0.90482 0.81513 0.71132 1.90854 1.70855 1.34456 1.46583 1.84559 1.28420 1.32929 1.84338 1.20391 0.80041 0.87323 0.81119 1.90651 1.37610 1.76245 1.35773 1.43209 1.55830 1.06953 1.23142 1.17582 0.93719 0.83917 1.02236 1.21002 0.99475 0.91333 1.03145 1.20947 0.95976 0.96063 1.00369 1.20417 0.94946 0.96322 0.95680 1.18084 0.95398 0.88220 0.96172 1.21404 1.34822 0.95682 1.04762 0.93261 1.25892 0.95225 0.97681 1.00444 1.70075 1.40747 1.08505 1.37514 0.85417 0.78346 0.78307 0.79112 1.19438 1.19804 1.20000 1.20967 1.00183 0.92517 1.00250 1.21152 0.95793 0.95980 1.01008 0.90960 0.91603 0.92276 0.90106 0.91645 0.90613 0.92601 0.91197 0.94092 0.70849 0.74148 0.83401 0.85838 0.97381 0.97823 0.92495 0.86870 0.84626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 8.18 71.98 0.59 -1.80 16 2 C -0.04 -0.56 0.54 -52.18 -0.03 -0.58 16 3 C -0.15 -1.37 7.95 71.98 0.57 -0.80 16 4 C -0.16 -3.25 7.93 71.98 0.57 -2.68 16 5 C -0.09 -1.37 2.04 -12.28 -0.03 -1.40 16 6 H 0.17 1.21 8.14 -2.39 -0.02 1.19 16 7 C 0.50 7.54 6.21 71.24 0.44 7.99 16 8 O -0.54 -12.57 16.24 21.96 0.36 -12.21 16 9 O -0.49 -3.53 10.34 -51.39 -0.53 -4.07 16 10 C 0.52 12.63 5.91 87.66 0.52 13.14 16 11 O -0.53 -16.38 8.78 -3.03 -0.03 -16.40 16 12 N -0.65 -15.66 4.66 -303.50 -1.41 -17.07 16 13 C 0.12 3.88 6.30 38.15 0.24 4.12 16 14 C -0.13 -4.29 9.97 22.39 0.22 -4.07 16 15 C -0.11 -4.63 9.69 22.25 0.22 -4.42 16 16 C -0.07 -3.41 5.07 -19.84 -0.10 -3.51 16 17 C 0.06 3.23 5.10 29.10 0.15 3.38 16 18 C -0.53 -31.54 9.09 25.60 0.23 -31.31 16 19 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 20 C 0.01 0.34 5.46 84.65 0.46 0.80 16 21 N -0.93 -57.11 13.29 21.45 0.28 -56.83 16 22 Si 0.96 45.99 29.54 68.60 2.03 48.02 16 23 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 24 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 25 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 26 C -0.12 -5.17 9.69 22.25 0.22 -4.96 16 27 C -0.12 -4.43 8.70 22.39 0.19 -4.23 16 28 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.93 16 30 H 0.06 1.32 5.51 -2.39 -0.01 1.31 16 31 H 0.08 0.73 5.32 -2.39 -0.01 0.72 16 32 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 34 H 0.06 1.56 5.51 -2.38 -0.01 1.55 16 35 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.04 0.82 7.22 -2.39 -0.02 0.81 16 37 H 0.43 0.00 9.10 -74.06 -0.67 -0.68 16 38 H 0.42 7.28 8.70 -92.71 -0.81 6.48 16 39 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 40 H 0.12 4.82 8.06 -2.91 -0.02 4.80 16 41 H 0.01 0.46 8.09 -2.39 -0.02 0.44 16 42 H 0.00 0.20 8.08 -2.39 -0.02 0.18 16 43 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 44 H 0.11 4.87 8.06 -2.91 -0.02 4.85 16 45 H 0.14 4.82 6.22 -2.91 -0.02 4.80 16 Total: -1.00 -77.62 364.84 4.71 -72.90 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -0.45 Total: 15.98 kcal Atomic # 6 Polarization: -34.78 SS G_CDS: 4.47 Total: -30.31 kcal Atomic # 7 Polarization: -72.77 SS G_CDS: -1.13 Total: -73.90 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -0.20 Total: -32.68 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -77.62 4.71 -72.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902839503.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.092 kcal (2) G-P(sol) polarization free energy of solvation -77.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds