Wall clock time and date at job start Tue Mar 31 2020 12:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47457 * 2 1 4 4 C 1.52997 * 109.47325 * 120.00603 * 2 1 3 5 5 C 1.53009 * 109.46739 * 240.00446 * 2 1 3 6 6 H 1.09009 * 109.46801 * 299.99698 * 5 2 1 7 7 C 1.52998 * 109.47115 * 59.99614 * 5 2 1 8 8 C 1.50695 * 109.46889 * 184.99885 * 7 5 2 9 9 O 1.20831 * 120.00247 * 0.02562 * 8 7 5 10 10 O 1.34237 * 119.99886 * 180.02562 * 8 7 5 11 11 N 1.46497 * 109.46910 * 180.02562 * 5 2 1 12 12 C 1.34774 * 120.00049 * 84.99858 * 11 5 2 13 13 O 1.21542 * 120.00139 * 359.97438 * 12 11 5 14 14 C 1.47888 * 119.99986 * 179.97438 * 12 11 5 15 15 C 1.39919 * 120.02232 * 359.72987 * 14 12 11 16 16 C 1.38331 * 120.35677 * 179.71555 * 15 14 12 17 17 C 1.37747 * 120.41247 * 0.55691 * 16 15 14 18 18 C 1.40749 * 120.04059 * 359.72275 * 17 16 15 19 19 C 1.41436 * 120.18193 * 180.02562 * 18 17 16 20 20 H 1.08002 * 119.99907 * 24.43766 * 19 18 17 21 21 C 1.39940 * 120.00267 * 204.42641 * 19 18 17 22 22 N 1.30831 * 119.99721 * 17.89855 * 21 19 18 23 23 Si 1.86802 * 120.00302 * 197.88911 * 21 19 18 24 24 H 1.48502 * 109.46766 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.46813 * 120.00292 * 23 21 19 26 26 H 1.48500 * 109.47171 * 240.00715 * 23 21 19 27 27 C 1.38993 * 120.02641 * 180.02562 * 14 12 11 28 28 H 1.08995 * 109.47251 * 59.99651 * 1 2 3 29 29 H 1.09006 * 109.46533 * 299.99625 * 1 2 3 30 30 H 1.09000 * 109.46940 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46756 * 59.99944 * 3 2 1 32 32 H 1.08992 * 109.47075 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.46906 * 300.01004 * 3 2 1 34 34 H 1.08997 * 109.47254 * 59.99836 * 4 2 1 35 35 H 1.09000 * 109.47205 * 179.97438 * 4 2 1 36 36 H 1.09001 * 109.46680 * 299.99365 * 4 2 1 37 37 H 1.08997 * 109.47653 * 305.00068 * 7 5 2 38 38 H 1.09007 * 109.46935 * 65.00234 * 7 5 2 39 39 H 0.96700 * 116.99749 * 180.02562 * 10 8 7 40 40 H 0.96996 * 119.99854 * 264.99673 * 11 5 2 41 41 H 1.08000 * 119.82499 * 359.97326 * 15 14 12 42 42 H 1.08000 * 119.79448 * 180.25899 * 16 15 14 43 43 H 1.08002 * 119.98294 * 179.74550 * 17 16 15 44 44 H 0.96994 * 119.99844 * 179.97438 * 22 21 19 45 45 H 1.07998 * 120.20384 * 359.97438 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 2.0400 -0.7212 -1.2494 6 1 1.6766 -1.7489 -1.2494 7 6 1.5299 0.0001 -2.4985 8 6 1.9285 -0.7781 -3.7259 9 8 2.5558 -1.8047 -3.6131 10 8 1.5866 -0.3309 -4.9445 11 7 3.5049 -0.7218 -1.2491 12 6 4.1783 -1.6782 -0.5797 13 8 3.5702 -2.5401 0.0241 14 6 5.6572 -1.6791 -0.5799 15 6 6.3578 -0.6905 -1.2796 16 6 7.7411 -0.6813 -1.2796 17 6 8.4448 -1.6514 -0.6007 18 6 7.7574 -2.6574 0.1040 19 6 8.4771 -3.6546 0.8026 20 1 9.4849 -3.4585 1.1377 21 6 7.8832 -4.8954 1.0598 22 7 6.8319 -5.2713 0.3778 23 14 8.5916 -6.0149 2.3767 24 1 9.7716 -5.3623 2.9988 25 1 7.5621 -6.2696 3.4161 26 1 9.0041 -7.3025 1.7625 27 6 6.3522 -2.6656 0.1098 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.6768 1.9562 0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6768 -1.7490 1.2491 35 1 3.1301 -0.7217 1.2489 36 1 1.6768 -0.2075 2.1391 37 1 0.4436 0.0783 -2.4549 38 1 1.9645 0.9987 -2.5444 39 1 1.8644 -0.8644 -5.7017 40 1 3.9903 -0.0338 -1.7307 41 1 5.8157 0.0720 -1.8191 42 1 8.2726 0.0886 -1.8193 43 1 9.5248 -1.6400 -0.6087 44 1 6.4205 -6.1315 0.5559 45 1 5.8156 -3.4332 0.6476 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000908018779.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:43 Heat of formation + Delta-G solvation = -123.647812 kcal Electronic energy + Delta-G solvation = -27707.789507 eV Core-core repulsion = 23882.363442 eV Total energy + Delta-G solvation = -3825.426065 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.67438 -39.44720 -37.72701 -36.54072 -36.10646 -33.78199 -33.24003 -31.07154 -29.81910 -29.37105 -27.34059 -26.91024 -25.44302 -24.83491 -22.32545 -21.28995 -20.86988 -19.51744 -18.76009 -18.01986 -17.62366 -16.78433 -16.28865 -15.99649 -15.40537 -15.07571 -14.98773 -14.59134 -14.09083 -13.86100 -13.64668 -13.32617 -13.29537 -12.95775 -12.82449 -12.56143 -12.43264 -12.10714 -11.97527 -11.63025 -11.55174 -11.52657 -11.40643 -11.13479 -11.06547 -11.00494 -10.70645 -10.61632 -10.55008 -10.47505 -10.43120 -9.94080 -9.64504 -9.18183 -8.88372 -8.49930 -7.57191 -7.47197 -6.75935 -4.37348 2.19284 2.29345 2.84664 2.91731 3.10195 3.15117 3.18021 3.69435 3.93740 3.96922 4.44505 4.65699 4.79787 4.89873 4.96253 5.06341 5.18993 5.33799 5.49712 5.54019 5.65709 5.74040 5.77800 5.80045 5.98170 6.03526 6.08078 6.11604 6.14427 6.26157 6.31493 6.43208 6.46670 6.73122 6.76757 6.96213 7.03477 7.07485 7.25808 7.43405 7.75000 7.81279 7.85582 7.97457 8.16165 8.24778 8.55497 8.84625 8.88335 9.08237 10.18581 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014992 B = 0.003795 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.249862 B = 7376.894827 C = 7846.974320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.078 4.078 3 C -0.145 4.145 4 C -0.133 4.133 5 C 0.169 3.831 6 H 0.096 0.904 7 C -0.126 4.126 8 C 0.466 3.534 9 O -0.488 6.488 10 O -0.525 6.525 11 N -0.724 5.724 12 C 0.572 3.428 13 O -0.539 6.539 14 C -0.125 4.125 15 C -0.217 4.217 16 C -0.098 4.098 17 C -0.213 4.213 18 C 0.099 3.901 19 C -0.461 4.461 20 H 0.081 0.919 21 C 0.074 3.926 22 N -0.782 5.782 23 Si 0.908 3.092 24 H -0.260 1.260 25 H -0.271 1.271 26 H -0.274 1.274 27 C -0.093 4.093 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.043 0.957 37 H 0.119 0.881 38 H 0.111 0.889 39 H 0.409 0.591 40 H 0.394 0.606 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.284 0.716 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.195 11.562 -4.680 17.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.079 4.079 3 C -0.202 4.202 4 C -0.190 4.190 5 C 0.063 3.937 6 H 0.114 0.886 7 C -0.164 4.164 8 C 0.307 3.693 9 O -0.373 6.373 10 O -0.337 6.337 11 N -0.377 5.377 12 C 0.363 3.637 13 O -0.417 6.417 14 C -0.128 4.128 15 C -0.237 4.237 16 C -0.117 4.117 17 C -0.233 4.233 18 C 0.096 3.904 19 C -0.490 4.490 20 H 0.099 0.901 21 C -0.146 4.146 22 N -0.406 5.406 23 Si 0.732 3.268 24 H -0.183 1.183 25 H -0.196 1.196 26 H -0.199 1.199 27 C -0.113 4.113 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.137 0.863 38 H 0.129 0.871 39 H 0.268 0.732 40 H 0.229 0.771 41 H 0.104 0.896 42 H 0.109 0.891 43 H 0.113 0.887 44 H 0.095 0.905 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.737 10.651 -3.902 17.056 hybrid contribution 0.710 -0.530 -0.427 0.984 sum -12.027 10.120 -4.329 16.304 Atomic orbital electron populations 1.21956 0.94412 1.02100 1.01675 1.20960 0.95269 0.95807 0.95872 1.21936 1.01884 0.95011 1.01360 1.21890 1.02258 1.00166 0.94686 1.20685 0.81805 1.00419 0.90788 0.88629 1.21870 1.04766 1.00505 0.89265 1.23482 0.76694 0.84514 0.84630 1.90872 1.35720 1.23970 1.86766 1.84507 1.75256 1.56729 1.17247 1.45811 1.05185 1.31550 1.55113 1.18616 0.88146 0.79786 0.77129 1.90686 1.70115 1.37176 1.43732 1.19496 0.90314 0.99163 1.03858 1.20310 0.94019 1.01268 1.08147 1.20415 0.93651 0.98004 0.99602 1.21078 0.97864 1.00101 1.04292 1.17603 0.91592 0.91554 0.89619 1.19612 1.01127 0.96699 1.31537 0.90113 1.25962 0.94305 0.98798 0.95497 1.69810 1.17748 1.20355 1.32704 0.86260 0.80034 0.79512 0.80953 1.18350 1.19567 1.19941 1.21634 0.94081 0.96661 0.98910 0.92614 0.92293 0.92315 0.92622 0.92011 0.92841 0.91740 0.91856 0.93764 0.86263 0.87107 0.73245 0.77104 0.89553 0.89070 0.88728 0.90516 0.84839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.13 37.16 0.30 -1.01 16 2 C -0.08 -0.91 0.62 -154.50 -0.10 -1.01 16 3 C -0.14 -1.45 7.96 37.16 0.30 -1.15 16 4 C -0.13 -1.99 7.00 37.16 0.26 -1.73 16 5 C 0.17 2.27 1.09 -67.93 -0.07 2.20 16 6 H 0.10 1.58 7.39 -51.92 -0.38 1.20 16 7 C -0.13 -1.23 4.63 -27.89 -0.13 -1.35 16 8 C 0.47 5.65 8.19 36.00 0.29 5.95 16 9 O -0.49 -8.37 16.11 -18.75 -0.30 -8.67 16 10 O -0.52 -4.80 13.42 -39.28 -0.53 -5.33 16 11 N -0.72 -11.89 3.29 -54.73 -0.18 -12.07 16 12 C 0.57 12.48 6.13 -12.31 -0.08 12.40 16 13 O -0.54 -13.21 13.45 5.33 0.07 -13.14 16 14 C -0.13 -3.01 5.87 -105.04 -0.62 -3.62 16 15 C -0.22 -4.68 9.55 -38.92 -0.37 -5.05 16 16 C -0.10 -2.15 10.01 -39.73 -0.40 -2.55 16 17 C -0.21 -5.18 9.78 -38.81 -0.38 -5.56 16 18 C 0.10 2.66 5.57 -106.87 -0.60 2.07 16 19 C -0.46 -12.33 9.05 -37.73 -0.34 -12.67 16 20 H 0.08 2.05 7.91 -52.49 -0.42 1.64 16 21 C 0.07 1.89 5.14 -17.34 -0.09 1.80 16 22 N -0.78 -21.22 10.96 55.55 0.61 -20.61 16 23 Si 0.91 19.09 29.60 -169.99 -5.03 14.06 16 24 H -0.26 -5.34 7.11 56.52 0.40 -4.93 16 25 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 26 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 27 C -0.09 -2.52 8.24 -38.44 -0.32 -2.83 16 28 H 0.05 0.39 6.32 -51.93 -0.33 0.06 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.71 7.60 -51.93 -0.39 0.31 16 33 H 0.05 0.41 6.54 -51.92 -0.34 0.08 16 34 H 0.06 1.08 7.53 -51.93 -0.39 0.69 16 35 H 0.06 1.14 5.77 -51.93 -0.30 0.84 16 36 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.12 0.86 6.17 -51.93 -0.32 0.54 16 38 H 0.11 0.85 6.71 -51.92 -0.35 0.50 16 39 H 0.41 2.36 9.10 45.56 0.41 2.78 16 40 H 0.39 5.80 6.62 -40.82 -0.27 5.53 16 41 H 0.09 1.55 6.38 -52.49 -0.33 1.22 16 42 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 43 H 0.09 2.14 8.06 -52.49 -0.42 1.71 16 44 H 0.28 7.07 8.30 -40.82 -0.34 6.73 16 45 H 0.13 3.92 5.74 -52.49 -0.30 3.61 16 LS Contribution 361.87 15.07 5.45 5.45 Total: -1.00 -33.02 361.87 -7.62 -40.64 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -5.38 Total: 13.78 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: -2.33 Total: -14.12 kcal Atomic # 7 Polarization: -33.10 SS G_CDS: 0.43 Total: -32.67 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.76 Total: -27.14 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.02 -7.62 -40.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908018779.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.011 kcal (2) G-P(sol) polarization free energy of solvation -33.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds