Wall clock time and date at job start Tue Mar 31 2020 13:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52998 * 109.47001 * 2 1 4 4 C 1.53003 * 109.47006 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47110 * 180.02562 * 4 3 2 6 6 C 1.37104 * 120.00148 * 270.00002 * 5 4 3 7 7 H 1.07993 * 120.00077 * 145.31086 * 6 5 4 8 8 C 1.38955 * 119.99639 * 325.31113 * 6 5 4 9 9 N 1.31408 * 120.00092 * 337.26718 * 8 6 5 10 10 Si 1.86798 * 119.99836 * 157.27090 * 8 6 5 11 11 H 1.48502 * 109.47242 * 59.99480 * 10 8 6 12 12 H 1.48501 * 109.46919 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.46925 * 299.99692 * 10 8 6 14 14 C 1.34775 * 120.00306 * 90.00165 * 5 4 3 15 15 O 1.21297 * 120.00057 * 4.88426 * 14 5 4 16 16 C 1.50696 * 120.00267 * 184.87998 * 14 5 4 17 17 C 1.53006 * 109.47253 * 177.72412 * 16 14 5 18 18 C 1.50699 * 109.47284 * 180.02562 * 17 16 14 19 19 C 1.38253 * 119.92615 * 269.73328 * 18 17 16 20 20 C 1.38244 * 120.13999 * 179.69255 * 19 18 17 21 21 C 1.38540 * 120.03029 * 0.62782 * 20 19 18 22 22 C 1.39268 * 119.82823 * 359.64330 * 21 20 19 23 23 C 1.38236 * 119.93178 * 89.99844 * 18 17 16 24 24 O 1.36501 * 108.63912 * 179.97438 * 22 21 20 25 25 C 1.43985 * 105.48473 * 342.71975 * 24 22 21 26 26 O 1.36499 * 131.53268 * 179.64729 * 21 20 19 27 27 H 1.08994 * 109.47084 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46730 * 300.00029 * 1 2 3 29 29 H 1.09006 * 109.46683 * 59.99503 * 1 2 3 30 30 H 1.08995 * 109.47066 * 240.00245 * 2 1 3 31 31 H 1.08997 * 109.46554 * 120.00381 * 2 1 3 32 32 H 1.09009 * 109.47123 * 60.00238 * 3 2 1 33 33 H 1.08994 * 109.47706 * 300.00156 * 3 2 1 34 34 H 1.08995 * 109.46843 * 60.00379 * 4 3 2 35 35 H 1.09006 * 109.46902 * 300.00634 * 4 3 2 36 36 H 0.96993 * 120.00281 * 185.01405 * 9 8 6 37 37 H 1.08995 * 109.47484 * 297.72936 * 16 14 5 38 38 H 1.09009 * 109.46927 * 57.73166 * 16 14 5 39 39 H 1.08996 * 109.47041 * 300.00157 * 17 16 14 40 40 H 1.08997 * 109.46844 * 60.00225 * 17 16 14 41 41 H 1.08001 * 119.92692 * 359.96641 * 19 18 17 42 42 H 1.08005 * 119.98096 * 180.26693 * 20 19 18 43 43 H 1.08002 * 119.98080 * 0.02562 * 23 18 17 44 44 H 1.08993 * 110.57681 * 268.55340 * 25 24 22 45 45 H 1.09009 * 110.57008 * 145.68188 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0584 2.8237 0.0013 6 6 4.2874 3.4704 -1.1858 7 1 4.0976 4.5302 -1.2687 8 6 4.7637 2.7620 -2.2822 9 7 5.4074 1.6302 -2.1041 10 14 4.4892 3.4185 -4.0093 11 1 5.1281 4.7528 -4.1390 12 1 5.0900 2.4845 -4.9952 13 1 3.0318 3.5405 -4.2666 14 6 4.2826 3.4587 1.1687 15 8 4.1655 2.8599 2.2171 16 6 4.6789 4.9126 1.1717 17 6 4.8158 5.4010 2.6152 18 6 5.2114 6.8551 2.6182 19 6 6.5487 7.2060 2.6219 20 6 6.9167 8.5386 2.6182 21 6 5.9451 9.5262 2.6239 22 6 4.5980 9.1727 2.6258 23 6 4.2366 7.8352 2.6227 24 8 3.8477 10.3130 2.6321 25 6 4.7443 11.3608 3.0462 26 8 6.0388 10.8880 2.6284 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6768 1.9564 -0.8899 34 1 3.9337 0.9286 -0.8891 35 1 3.9330 0.9287 0.8909 36 1 5.8030 1.1727 -2.8623 37 1 5.6320 5.0305 0.6562 38 1 3.9146 5.4985 0.6609 39 1 3.8626 5.2832 3.1305 40 1 5.5799 4.8151 3.1260 41 1 7.3074 6.4375 2.6232 42 1 7.9621 8.8098 2.6168 43 1 3.1927 7.5581 2.6245 44 1 4.7130 11.4864 4.1284 45 1 4.4981 12.2964 2.5438 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142981602.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:17 Heat of formation + Delta-G solvation = -88.774161 kcal Electronic energy + Delta-G solvation = -26384.469842 eV Core-core repulsion = 22560.556012 eV Total energy + Delta-G solvation = -3823.913830 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.17428 -38.84475 -38.01893 -36.32661 -35.42710 -33.90240 -33.02115 -31.48708 -30.45930 -29.35839 -28.08864 -25.97237 -24.92615 -24.32858 -22.94267 -22.47728 -21.17238 -20.32450 -19.00774 -17.94507 -17.51837 -17.38321 -16.74567 -16.23844 -15.74742 -14.98480 -14.68585 -14.49650 -14.46459 -14.27407 -14.04267 -13.86068 -13.52107 -13.26789 -13.11430 -13.03073 -12.63064 -12.29934 -12.20647 -12.00075 -11.65236 -11.61008 -11.36415 -11.18748 -11.01888 -10.90875 -10.60628 -10.57646 -10.46359 -10.40581 -10.29631 -10.16635 -9.70544 -9.11628 -8.81197 -8.40669 -7.96255 -7.47819 -6.37933 -4.03555 1.16603 1.25232 2.70316 3.11334 3.20145 3.22552 3.36614 3.60333 3.91595 4.11360 4.48637 4.51680 4.67768 4.76181 4.95482 5.06941 5.13316 5.16924 5.30465 5.49370 5.49651 5.55533 5.67012 5.74019 5.82432 6.01589 6.08342 6.10126 6.14793 6.25269 6.28975 6.32372 6.40036 6.41552 6.47116 6.50663 6.66019 6.73175 6.75118 6.81002 6.84740 7.11999 7.16028 7.37375 7.53921 7.96270 8.38318 9.07710 9.54157 9.97463 10.63540 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013363 B = 0.003077 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.820245 B = 9097.924337 C = 9999.763907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C -0.126 4.126 4 C 0.109 3.891 5 N -0.438 5.438 6 C -0.343 4.343 7 H 0.090 0.910 8 C 0.046 3.954 9 N -0.858 5.858 10 Si 0.911 3.089 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.272 1.272 14 C 0.468 3.532 15 O -0.609 6.609 16 C -0.113 4.113 17 C -0.062 4.062 18 C -0.056 4.056 19 C -0.106 4.106 20 C -0.096 4.096 21 C 0.015 3.985 22 C 0.031 3.969 23 C -0.097 4.097 24 O -0.311 6.311 25 C 0.214 3.786 26 O -0.313 6.313 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.107 0.893 35 H 0.053 0.947 36 H 0.271 0.729 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.140 0.860 42 H 0.133 0.867 43 H 0.135 0.865 44 H 0.080 0.920 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.378 11.139 6.465 12.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.165 4.165 4 C -0.014 4.014 5 N -0.155 5.155 6 C -0.470 4.470 7 H 0.108 0.892 8 C -0.160 4.160 9 N -0.495 5.495 10 Si 0.738 3.262 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.198 1.198 14 C 0.257 3.743 15 O -0.496 6.496 16 C -0.153 4.153 17 C -0.100 4.100 18 C -0.057 4.057 19 C -0.124 4.124 20 C -0.115 4.115 21 C -0.028 4.028 22 C -0.013 4.013 23 C -0.116 4.116 24 O -0.227 6.227 25 C 0.102 3.898 26 O -0.229 6.229 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.125 0.875 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.158 0.842 42 H 0.151 0.849 43 H 0.153 0.847 44 H 0.098 0.902 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.445 10.842 6.714 12.834 hybrid contribution -0.141 0.703 -1.077 1.294 sum -1.586 11.545 5.636 12.945 Atomic orbital electron populations 1.21761 0.96677 1.00659 1.01456 1.21432 0.94933 0.97803 1.01603 1.21891 0.97991 0.95398 1.01195 1.21464 0.91093 0.85174 1.03704 1.43453 1.55443 1.12076 1.04551 1.19379 1.45383 0.94888 0.87387 0.89246 1.25304 0.94578 0.95998 1.00101 1.69842 1.30244 1.17350 1.32051 0.86245 0.79028 0.78861 0.82075 1.19731 1.20908 1.19785 1.20372 0.80626 0.89245 0.84064 1.90515 1.58239 1.68818 1.32073 1.21337 1.03452 0.94899 0.95596 1.20371 1.03132 0.88726 0.97734 1.19874 0.92370 0.95964 0.97453 1.20928 0.96196 0.94731 1.00549 1.20055 0.98166 0.90221 1.03066 1.19761 0.94095 0.83160 1.05831 1.19764 0.88395 0.88744 1.04442 1.20017 1.00969 0.87230 1.03364 1.87352 1.34997 1.15418 1.84973 1.25557 0.72629 0.91884 0.99763 1.87333 1.33798 1.16780 1.85029 0.93434 0.93109 0.93051 0.92238 0.92423 0.93196 0.92297 0.87533 0.92801 0.91886 0.89400 0.90372 0.90524 0.90016 0.84204 0.84912 0.84711 0.90204 0.85492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.91 37.16 0.37 -1.73 16 2 C -0.12 -2.02 5.93 -26.73 -0.16 -2.18 16 3 C -0.13 -2.56 5.54 -26.73 -0.15 -2.71 16 4 C 0.11 2.59 5.04 -4.04 -0.02 2.57 16 5 N -0.44 -10.81 2.54 -114.81 -0.29 -11.10 16 6 C -0.34 -8.48 8.73 -14.93 -0.13 -8.61 16 7 H 0.09 2.12 6.95 -52.49 -0.36 1.75 16 8 C 0.05 1.15 4.95 -17.47 -0.09 1.06 16 9 N -0.86 -22.28 11.34 55.50 0.63 -21.65 16 10 Si 0.91 19.21 29.61 -169.99 -5.03 14.18 16 11 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 12 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 13 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 14 C 0.47 11.04 7.62 -10.99 -0.08 10.95 16 15 O -0.61 -15.59 15.54 5.54 0.09 -15.50 16 16 C -0.11 -2.15 4.31 -27.88 -0.12 -2.27 16 17 C -0.06 -1.00 4.63 -27.88 -0.13 -1.13 16 18 C -0.06 -0.80 5.13 -104.62 -0.54 -1.34 16 19 C -0.11 -1.37 9.69 -39.57 -0.38 -1.75 16 20 C -0.10 -1.20 10.06 -39.47 -0.40 -1.60 16 21 C 0.02 0.21 7.15 -39.09 -0.28 -0.07 16 22 C 0.03 0.43 7.15 -39.08 -0.28 0.15 16 23 C -0.10 -1.37 9.71 -39.47 -0.38 -1.75 16 24 O -0.31 -4.10 11.40 -45.69 -0.52 -4.62 16 25 C 0.21 2.06 8.89 101.05 0.90 2.96 16 26 O -0.31 -3.97 11.40 -45.69 -0.52 -4.49 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.05 1.04 8.14 -51.92 -0.42 0.62 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.11 2.68 5.36 -51.93 -0.28 2.41 16 35 H 0.05 1.33 7.36 -51.93 -0.38 0.95 16 36 H 0.27 6.66 8.32 -40.82 -0.34 6.32 16 37 H 0.09 1.68 8.09 -51.93 -0.42 1.26 16 38 H 0.08 1.43 7.68 -51.92 -0.40 1.03 16 39 H 0.08 1.25 8.06 -51.93 -0.42 0.83 16 40 H 0.08 1.34 8.02 -51.93 -0.42 0.92 16 41 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 42 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 43 H 0.14 1.76 8.06 -52.49 -0.42 1.34 16 44 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.13 0.81 8.14 -51.92 -0.42 0.39 16 LS Contribution 374.91 15.07 5.65 5.65 Total: -1.00 -29.69 374.91 -8.76 -38.45 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -6.89 Total: 6.53 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -1.87 Total: -7.44 kcal Atomic # 7 Polarization: -33.09 SS G_CDS: 0.34 Total: -32.75 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.96 Total: -24.62 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.69 -8.76 -38.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142981602.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.324 kcal (2) G-P(sol) polarization free energy of solvation -29.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds