Wall clock time and date at job start Tue Mar 31 2020 13:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52998 * 109.47001 * 2 1 4 4 C 1.53003 * 109.47006 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47110 * 180.02562 * 4 3 2 6 6 C 1.37104 * 120.00148 * 270.00002 * 5 4 3 7 7 H 1.07993 * 120.00077 * 145.31086 * 6 5 4 8 8 C 1.38955 * 119.99639 * 325.31113 * 6 5 4 9 9 N 1.31408 * 120.00092 * 337.26718 * 8 6 5 10 10 Si 1.86798 * 119.99836 * 157.27090 * 8 6 5 11 11 H 1.48502 * 109.47242 * 59.99480 * 10 8 6 12 12 H 1.48501 * 109.46919 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.46925 * 299.99692 * 10 8 6 14 14 C 1.34775 * 120.00306 * 90.00165 * 5 4 3 15 15 O 1.21297 * 120.00057 * 4.88426 * 14 5 4 16 16 C 1.50696 * 120.00267 * 184.87998 * 14 5 4 17 17 C 1.53006 * 109.47253 * 177.72412 * 16 14 5 18 18 C 1.50699 * 109.47284 * 180.02562 * 17 16 14 19 19 C 1.38253 * 119.92615 * 269.73328 * 18 17 16 20 20 C 1.38244 * 120.13999 * 179.69255 * 19 18 17 21 21 C 1.38540 * 120.03029 * 0.62782 * 20 19 18 22 22 C 1.39268 * 119.82823 * 359.64330 * 21 20 19 23 23 C 1.38236 * 119.93178 * 89.99844 * 18 17 16 24 24 O 1.36501 * 108.63912 * 179.97438 * 22 21 20 25 25 C 1.43985 * 105.48473 * 342.71975 * 24 22 21 26 26 O 1.36499 * 131.53268 * 179.64729 * 21 20 19 27 27 H 1.08994 * 109.47084 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46730 * 300.00029 * 1 2 3 29 29 H 1.09006 * 109.46683 * 59.99503 * 1 2 3 30 30 H 1.08995 * 109.47066 * 240.00245 * 2 1 3 31 31 H 1.08997 * 109.46554 * 120.00381 * 2 1 3 32 32 H 1.09009 * 109.47123 * 60.00238 * 3 2 1 33 33 H 1.08994 * 109.47706 * 300.00156 * 3 2 1 34 34 H 1.08995 * 109.46843 * 60.00379 * 4 3 2 35 35 H 1.09006 * 109.46902 * 300.00634 * 4 3 2 36 36 H 0.96993 * 120.00281 * 185.01405 * 9 8 6 37 37 H 1.08995 * 109.47484 * 297.72936 * 16 14 5 38 38 H 1.09009 * 109.46927 * 57.73166 * 16 14 5 39 39 H 1.08996 * 109.47041 * 300.00157 * 17 16 14 40 40 H 1.08997 * 109.46844 * 60.00225 * 17 16 14 41 41 H 1.08001 * 119.92692 * 359.96641 * 19 18 17 42 42 H 1.08005 * 119.98096 * 180.26693 * 20 19 18 43 43 H 1.08002 * 119.98080 * 0.02562 * 23 18 17 44 44 H 1.08993 * 110.57681 * 268.55340 * 25 24 22 45 45 H 1.09009 * 110.57008 * 145.68188 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0584 2.8237 0.0013 6 6 4.2874 3.4704 -1.1858 7 1 4.0976 4.5302 -1.2687 8 6 4.7637 2.7620 -2.2822 9 7 5.4074 1.6302 -2.1041 10 14 4.4892 3.4185 -4.0093 11 1 5.1281 4.7528 -4.1390 12 1 5.0900 2.4845 -4.9952 13 1 3.0318 3.5405 -4.2666 14 6 4.2826 3.4587 1.1687 15 8 4.1655 2.8599 2.2171 16 6 4.6789 4.9126 1.1717 17 6 4.8158 5.4010 2.6152 18 6 5.2114 6.8551 2.6182 19 6 6.5487 7.2060 2.6219 20 6 6.9167 8.5386 2.6182 21 6 5.9451 9.5262 2.6239 22 6 4.5980 9.1727 2.6258 23 6 4.2366 7.8352 2.6227 24 8 3.8477 10.3130 2.6321 25 6 4.7443 11.3608 3.0462 26 8 6.0388 10.8880 2.6284 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6768 1.9564 -0.8899 34 1 3.9337 0.9286 -0.8891 35 1 3.9330 0.9287 0.8909 36 1 5.8030 1.1727 -2.8623 37 1 5.6320 5.0305 0.6562 38 1 3.9146 5.4985 0.6609 39 1 3.8626 5.2832 3.1305 40 1 5.5799 4.8151 3.1260 41 1 7.3074 6.4375 2.6232 42 1 7.9621 8.8098 2.6168 43 1 3.1927 7.5581 2.6245 44 1 4.7130 11.4864 4.1284 45 1 4.4981 12.2964 2.5438 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142981602.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:16 Heat of formation + Delta-G solvation = -103.544190 kcal Electronic energy + Delta-G solvation = -26385.110319 eV Core-core repulsion = 22560.556012 eV Total energy + Delta-G solvation = -3824.554306 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.10974 -40.57344 -39.20833 -37.27324 -37.18699 -35.53062 -34.34196 -33.38443 -31.48834 -30.70090 -29.48660 -26.97291 -26.71804 -25.63305 -23.94950 -23.89957 -22.38734 -21.87966 -20.88557 -18.89907 -18.60964 -18.45006 -18.32636 -17.72279 -17.05659 -16.62326 -16.19599 -16.12225 -15.92272 -15.44590 -15.35698 -14.87770 -14.82723 -14.55541 -14.38277 -13.98449 -13.89379 -13.78278 -13.69280 -13.52006 -13.12553 -13.01740 -12.84998 -12.78854 -12.57305 -12.19018 -12.11127 -12.00291 -11.95335 -11.81981 -11.75439 -11.59881 -11.41476 -10.97979 -10.30247 -9.82436 -9.41105 -8.99838 -8.27501 -5.99498 0.11726 0.23172 1.43241 1.50017 1.57417 1.79735 2.06825 2.33547 2.52539 2.55803 3.00273 3.13702 3.49539 3.82425 3.84481 4.03097 4.07530 4.09793 4.18777 4.25250 4.31446 4.32058 4.36972 4.40955 4.49805 4.58003 4.64839 4.84149 4.87950 4.90068 4.99515 5.02490 5.06144 5.11106 5.11691 5.19444 5.26687 5.29624 5.37654 5.45073 5.45954 5.49670 5.61801 5.63576 6.07317 6.14169 6.46457 7.15754 7.64453 8.08036 8.74796 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013363 B = 0.003077 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.820245 B = 9097.924337 C = 9999.763907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.113 4.113 4 C 0.110 3.890 5 N -0.451 5.451 6 C -0.357 4.357 7 H 0.098 0.902 8 C 0.008 3.992 9 N -0.891 5.891 10 Si 0.977 3.023 11 H -0.264 1.264 12 H -0.284 1.284 13 H -0.269 1.269 14 C 0.454 3.546 15 O -0.636 6.636 16 C -0.102 4.102 17 C -0.048 4.048 18 C -0.066 4.066 19 C -0.104 4.104 20 C -0.096 4.096 21 C 0.010 3.990 22 C 0.017 3.983 23 C -0.105 4.105 24 O -0.327 6.327 25 C 0.204 3.796 26 O -0.323 6.323 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.039 0.961 33 H 0.053 0.947 34 H 0.092 0.908 35 H 0.032 0.968 36 H 0.273 0.727 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.155 0.845 42 H 0.157 0.843 43 H 0.138 0.862 44 H 0.104 0.896 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.677 12.729 5.906 14.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 C -0.152 4.152 4 C -0.014 4.014 5 N -0.169 5.169 6 C -0.484 4.484 7 H 0.116 0.884 8 C -0.196 4.196 9 N -0.528 5.528 10 Si 0.801 3.199 11 H -0.189 1.189 12 H -0.209 1.209 13 H -0.194 1.194 14 C 0.244 3.756 15 O -0.525 6.525 16 C -0.141 4.141 17 C -0.086 4.086 18 C -0.066 4.066 19 C -0.122 4.122 20 C -0.114 4.114 21 C -0.035 4.035 22 C -0.027 4.027 23 C -0.124 4.124 24 O -0.244 6.244 25 C 0.094 3.906 26 O -0.240 6.240 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.109 0.891 35 H 0.051 0.949 36 H 0.082 0.918 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.173 0.827 42 H 0.175 0.825 43 H 0.156 0.844 44 H 0.121 0.879 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.749 12.450 6.161 14.001 hybrid contribution -0.014 0.252 -0.842 0.879 sum -1.763 12.702 5.319 13.883 Atomic orbital electron populations 1.21714 0.94123 1.02352 1.01785 1.21416 0.97131 0.95216 1.01687 1.21755 0.95444 0.97704 1.00284 1.21425 0.93296 0.84939 1.01755 1.43743 1.55649 1.12367 1.05121 1.19690 1.45621 0.95475 0.87613 0.88396 1.26093 0.93893 0.96145 1.03438 1.69949 1.31125 1.18628 1.33097 0.85236 0.78903 0.78423 0.77358 1.18852 1.20896 1.19382 1.21175 0.79971 0.91006 0.83405 1.90482 1.59276 1.69904 1.32829 1.21270 1.03287 0.91812 0.97754 1.20165 1.02773 0.90096 0.95560 1.19654 0.93173 0.94594 0.99180 1.21124 0.95909 0.95519 0.99664 1.20323 0.99288 0.89699 1.02101 1.20013 0.94142 0.83887 1.05408 1.19878 0.88978 0.89021 1.04808 1.20073 1.01185 0.87549 1.03573 1.87321 1.36053 1.15742 1.85267 1.26111 0.70919 0.91853 1.01739 1.87310 1.35352 1.16144 1.85205 0.91076 0.92843 0.92685 0.92177 0.92366 0.94167 0.92866 0.89054 0.94896 0.91770 0.89438 0.89668 0.91076 0.90543 0.82738 0.82490 0.84433 0.87852 0.82218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 9.91 71.99 0.71 -3.08 16 2 C -0.12 -3.88 5.93 30.60 0.18 -3.70 16 3 C -0.11 -4.67 5.54 30.59 0.17 -4.50 16 4 C 0.11 5.36 5.04 86.38 0.44 5.80 16 5 N -0.45 -22.81 2.54 -635.54 -1.61 -24.43 16 6 C -0.36 -17.75 8.73 84.04 0.73 -17.01 16 7 H 0.10 4.60 6.95 -2.91 -0.02 4.58 16 8 C 0.01 0.38 4.95 84.93 0.42 0.80 16 9 N -0.89 -46.81 11.34 21.66 0.25 -46.57 16 10 Si 0.98 38.91 29.61 68.60 2.03 40.94 16 11 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 12 H -0.28 -11.21 7.11 99.48 0.71 -10.51 16 13 H -0.27 -10.49 7.11 99.48 0.71 -9.79 16 14 C 0.45 21.93 7.62 87.66 0.67 22.60 16 15 O -0.64 -33.51 15.54 -3.08 -0.05 -33.56 16 16 C -0.10 -3.89 4.31 29.85 0.13 -3.76 16 17 C -0.05 -1.56 4.63 29.85 0.14 -1.42 16 18 C -0.07 -1.83 5.13 -19.86 -0.10 -1.93 16 19 C -0.10 -2.55 9.69 22.27 0.22 -2.33 16 20 C -0.10 -2.21 10.06 22.34 0.22 -1.98 16 21 C 0.01 0.25 7.15 22.59 0.16 0.41 16 22 C 0.02 0.47 7.15 22.59 0.16 0.64 16 23 C -0.11 -2.91 9.71 22.34 0.22 -2.70 16 24 O -0.33 -8.18 11.40 -76.07 -0.87 -9.05 16 25 C 0.20 3.46 8.89 113.37 1.01 4.47 16 26 O -0.32 -7.55 11.40 -76.04 -0.87 -8.41 16 27 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 30 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 33 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.09 4.76 5.36 -2.39 -0.01 4.75 16 35 H 0.03 1.70 7.36 -2.38 -0.02 1.68 16 36 H 0.27 13.53 8.32 -92.71 -0.77 12.76 16 37 H 0.09 3.35 8.09 -2.39 -0.02 3.33 16 38 H 0.08 3.12 7.68 -2.38 -0.02 3.10 16 39 H 0.07 2.35 8.06 -2.39 -0.02 2.34 16 40 H 0.08 2.53 8.02 -2.39 -0.02 2.51 16 41 H 0.16 3.25 8.06 -2.91 -0.02 3.22 16 42 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16 43 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 44 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.16 1.56 8.14 -2.38 -0.02 1.54 16 Total: -1.00 -64.35 374.91 5.33 -59.02 By element: Atomic # 1 Polarization: 28.76 SS G_CDS: 0.98 Total: 29.74 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: 5.48 Total: -7.69 kcal Atomic # 7 Polarization: -69.63 SS G_CDS: -1.37 Total: -70.99 kcal Atomic # 8 Polarization: -49.24 SS G_CDS: -1.78 Total: -51.02 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.94 kcal Total: -64.35 5.33 -59.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142981602.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.524 kcal (2) G-P(sol) polarization free energy of solvation -64.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds