Wall clock time and date at job start Tue Mar 31 2020 12:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34228 * 116.99546 * 2 1 4 4 O 1.20827 * 120.00227 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00151 * 180.02562 * 3 2 1 6 6 N 1.46497 * 109.47568 * 179.97438 * 5 3 2 7 7 C 1.34778 * 120.00057 * 179.97438 * 6 5 3 8 8 O 1.21543 * 119.99985 * 359.97438 * 7 6 5 9 9 C 1.47847 * 119.99734 * 179.97438 * 7 6 5 10 10 C 1.39572 * 120.14317 * 180.02562 * 9 7 6 11 11 C 1.37957 * 119.85380 * 180.02562 * 10 9 7 12 12 C 1.38361 * 120.14425 * 0.02562 * 11 10 9 13 13 C 1.50706 * 119.85111 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47103 * 299.99884 * 13 12 11 15 15 C 1.52997 * 109.47238 * 60.00077 * 13 12 11 16 16 C 1.53002 * 109.46925 * 180.02562 * 13 12 11 17 17 C 1.50696 * 109.47300 * 180.02562 * 16 13 12 18 18 H 1.07999 * 119.99822 * 0.02562 * 17 16 13 19 19 C 1.37876 * 120.00339 * 179.97438 * 17 16 13 20 20 N 1.31514 * 119.99769 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00300 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47118 * 89.99790 * 21 19 17 23 23 H 1.48499 * 109.47134 * 210.00310 * 21 19 17 24 24 H 1.48498 * 109.47011 * 329.99931 * 21 19 17 25 25 C 1.38360 * 120.29215 * 0.23233 * 12 11 10 26 26 C 1.37954 * 120.14529 * 359.49070 * 25 12 11 27 27 H 1.09002 * 109.47784 * 299.99818 * 1 2 3 28 28 H 1.09001 * 109.47321 * 60.00620 * 1 2 3 29 29 H 1.09009 * 109.46801 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47096 * 59.99238 * 5 3 2 31 31 H 1.08999 * 109.47003 * 299.99695 * 5 3 2 32 32 H 0.97005 * 119.99795 * 359.97438 * 6 5 3 33 33 H 1.08002 * 120.07619 * 359.97438 * 10 9 7 34 34 H 1.08002 * 119.92731 * 179.97438 * 11 10 9 35 35 H 1.08992 * 109.47280 * 59.99899 * 14 13 12 36 36 H 1.09002 * 109.46777 * 180.02562 * 14 13 12 37 37 H 1.09000 * 109.47140 * 300.00046 * 14 13 12 38 38 H 1.09004 * 109.47261 * 59.99705 * 15 13 12 39 39 H 1.09002 * 109.47153 * 179.97438 * 15 13 12 40 40 H 1.09001 * 109.46832 * 299.99686 * 15 13 12 41 41 H 1.09004 * 109.46930 * 299.99901 * 16 13 12 42 42 H 1.09004 * 109.47059 * 59.99503 * 16 13 12 43 43 H 0.97000 * 120.00540 * 179.97438 * 20 19 17 44 44 H 1.08004 * 119.92476 * 179.74494 * 25 12 11 45 45 H 1.07999 * 120.07349 * 180.25276 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4031 2.2093 -0.0005 5 6 3.5662 1.2751 -0.0006 6 7 3.9815 2.6799 -0.0011 7 6 5.2919 2.9953 -0.0011 8 8 6.1290 2.1141 -0.0003 9 6 5.7110 4.4131 -0.0022 10 6 7.0671 4.7431 -0.0028 11 6 7.4515 6.0680 -0.0033 12 6 6.4959 7.0687 -0.0026 13 6 6.9232 8.5139 -0.0025 14 6 7.7600 8.7983 1.2463 15 6 7.7588 8.7988 -1.2521 16 6 5.6844 9.4119 -0.0011 17 6 6.1116 10.8571 -0.0017 18 1 7.1616 11.1098 -0.0034 19 6 5.1620 11.8567 -0.0012 20 7 3.8834 11.5490 0.0004 21 14 5.6915 13.6481 -0.0026 22 1 5.8303 14.1221 -1.4030 23 1 4.6698 14.4668 0.6982 24 1 6.9953 13.7794 0.6960 25 6 5.1499 6.7484 0.0034 26 6 4.7521 5.4275 -0.0019 27 1 -0.3635 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 3.9556 0.7811 -0.8907 31 1 3.9563 0.7809 0.8892 32 1 3.3134 3.3832 -0.0014 33 1 7.8140 3.9630 -0.0020 34 1 8.5005 6.3248 -0.0033 35 1 8.6424 8.1585 1.2458 36 1 8.0686 9.8437 1.2466 37 1 7.1647 8.5954 2.1366 38 1 7.1626 8.5962 -2.1419 39 1 8.0675 9.8442 -1.2523 40 1 8.6413 8.1590 -1.2526 41 1 5.0879 9.2094 -0.8907 42 1 5.0894 9.2088 0.8893 43 1 3.2152 12.2521 0.0011 44 1 4.4091 7.5343 0.0080 45 1 3.7011 5.1788 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148908462.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:14 Heat of formation + Delta-G solvation = -108.011602 kcal Electronic energy + Delta-G solvation = -25966.309081 eV Core-core repulsion = 22141.561053 eV Total energy + Delta-G solvation = -3824.748028 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.09474 -40.11956 -38.84084 -37.09748 -35.84475 -34.83369 -32.51509 -30.92703 -30.46303 -29.13320 -27.32627 -26.95353 -26.45440 -24.30324 -23.04828 -21.78227 -21.48709 -20.70212 -18.70607 -18.49591 -17.77151 -17.16510 -16.70022 -16.40356 -15.97052 -15.41149 -14.97620 -14.73561 -14.58126 -14.19906 -14.05035 -13.82233 -13.45858 -13.39677 -13.15028 -12.94823 -12.79539 -12.50999 -12.29836 -12.15848 -12.01458 -11.40496 -11.30524 -11.08174 -11.03081 -11.00348 -10.78712 -10.66728 -10.50860 -10.23401 -10.00876 -9.99077 -9.50880 -9.15017 -8.93896 -8.70477 -8.40108 -8.35069 -6.02829 -4.03489 1.06166 1.64556 1.68058 1.96434 2.91142 3.03949 3.29840 3.37012 3.39058 4.11145 4.18001 4.43325 4.66418 4.68422 4.73896 4.85226 4.96136 5.04622 5.08887 5.21142 5.31435 5.33651 5.64576 5.72615 5.77973 5.90398 5.93515 5.93932 6.02057 6.27285 6.34380 6.34576 6.51779 6.54026 6.63603 6.67542 6.82698 7.05280 7.05865 7.14357 7.17970 7.25635 7.29236 7.59067 7.71603 7.95551 8.01619 8.38994 9.00860 9.59915 11.08689 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017214 B = 0.002532 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.185687 B =11054.303864 C =12478.823304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.354 6.354 3 C 0.458 3.542 4 O -0.499 6.499 5 C 0.129 3.871 6 N -0.726 5.726 7 C 0.573 3.427 8 O -0.542 6.542 9 C -0.162 4.162 10 C -0.059 4.059 11 C -0.133 4.133 12 C -0.018 4.018 13 C -0.035 4.035 14 C -0.123 4.123 15 C -0.123 4.123 16 C 0.033 3.967 17 C -0.512 4.512 18 H 0.060 0.940 19 C 0.057 3.943 20 N -0.895 5.895 21 Si 0.888 3.112 22 H -0.281 1.281 23 H -0.288 1.288 24 H -0.274 1.274 25 C -0.122 4.122 26 C -0.084 4.084 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.105 0.895 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.413 0.587 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.035 0.965 36 H 0.069 0.931 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.069 0.931 40 H 0.035 0.965 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.260 0.740 44 H 0.145 0.855 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.178 -21.144 0.005 21.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.270 6.270 3 C 0.300 3.700 4 O -0.386 6.386 5 C 0.004 3.996 6 N -0.385 5.385 7 C 0.363 3.637 8 O -0.420 6.420 9 C -0.165 4.165 10 C -0.078 4.078 11 C -0.151 4.151 12 C -0.018 4.018 13 C -0.035 4.035 14 C -0.180 4.180 15 C -0.180 4.180 16 C -0.004 4.004 17 C -0.550 4.550 18 H 0.078 0.922 19 C -0.144 4.144 20 N -0.535 5.535 21 Si 0.716 3.284 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.140 4.140 26 C -0.102 4.102 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.123 0.877 30 H 0.132 0.868 31 H 0.132 0.868 32 H 0.253 0.747 33 H 0.147 0.853 34 H 0.144 0.856 35 H 0.054 0.946 36 H 0.088 0.912 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.088 0.912 40 H 0.054 0.946 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.070 0.930 44 H 0.162 0.838 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.021 -21.425 0.011 21.520 hybrid contribution -0.585 1.389 -0.012 1.508 sum -2.606 -20.035 -0.001 20.204 Atomic orbital electron populations 1.23357 0.75402 1.04079 1.02981 1.86474 1.24092 1.32534 1.83922 1.23601 0.91944 0.81872 0.72569 1.90714 1.66770 1.36234 1.44929 1.20584 0.86750 0.85683 1.06534 1.45720 1.08545 1.07059 1.77140 1.18368 0.81064 0.89249 0.75003 1.90749 1.51377 1.49755 1.50094 1.19566 0.94890 0.91149 1.10885 1.21108 0.94328 0.96532 0.95838 1.21042 0.99908 0.91825 1.02306 1.20612 0.92942 0.96608 0.91619 1.19812 0.98997 0.89201 0.95506 1.21756 0.97708 1.01913 0.96667 1.21756 0.97718 1.01902 0.96665 1.19247 0.90680 0.93220 0.97279 1.21226 0.92761 0.90881 1.50177 0.92224 1.24997 0.94978 0.98950 0.95500 1.69946 0.99824 1.32746 1.50972 0.86655 0.78327 0.85341 0.78047 1.20768 1.21349 1.19915 1.21463 0.96910 0.96066 0.99566 1.21298 0.98290 0.92911 0.97738 0.91536 0.91529 0.87701 0.86831 0.86827 0.74729 0.85281 0.85614 0.94627 0.91211 0.93402 0.93401 0.91221 0.94618 0.96194 0.96173 0.93046 0.83759 0.86141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.55 101.05 1.07 1.26 16 2 O -0.35 -2.80 10.57 -39.25 -0.41 -3.22 16 3 C 0.46 4.23 8.03 36.01 0.29 4.52 16 4 O -0.50 -5.94 15.42 -18.75 -0.29 -6.23 16 5 C 0.13 1.13 6.27 -5.20 -0.03 1.09 16 6 N -0.73 -8.11 5.48 -62.43 -0.34 -8.45 16 7 C 0.57 7.91 7.77 -12.33 -0.10 7.81 16 8 O -0.54 -8.62 16.35 5.33 0.09 -8.53 16 9 C -0.16 -2.35 5.87 -104.97 -0.62 -2.97 16 10 C -0.06 -0.86 9.60 -39.19 -0.38 -1.24 16 11 C -0.13 -2.01 8.69 -39.64 -0.34 -2.35 16 12 C -0.02 -0.30 4.77 -104.53 -0.50 -0.80 16 13 C -0.04 -0.67 0.61 -155.66 -0.09 -0.77 16 14 C -0.12 -2.21 8.03 37.16 0.30 -1.92 16 15 C -0.12 -2.21 8.03 37.16 0.30 -1.91 16 16 C 0.03 0.77 2.70 -27.88 -0.08 0.70 16 17 C -0.51 -13.38 7.65 -34.44 -0.26 -13.64 16 18 H 0.06 1.51 5.68 -52.49 -0.30 1.21 16 19 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 20 N -0.90 -25.82 13.29 55.43 0.74 -25.08 16 21 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 24 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 25 C -0.12 -2.08 8.96 -39.64 -0.36 -2.44 16 26 C -0.08 -1.22 9.54 -39.18 -0.37 -1.59 16 27 H 0.07 0.38 8.13 -51.93 -0.42 -0.05 16 28 H 0.07 0.38 8.13 -51.93 -0.42 -0.05 16 29 H 0.10 0.30 8.14 -51.92 -0.42 -0.13 16 30 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.41 4.51 5.48 -40.82 -0.22 4.28 16 33 H 0.13 1.75 7.65 -52.49 -0.40 1.35 16 34 H 0.13 1.69 7.08 -52.49 -0.37 1.32 16 35 H 0.03 0.54 7.37 -51.93 -0.38 0.16 16 36 H 0.07 1.33 6.62 -51.93 -0.34 0.98 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.07 1.32 6.62 -51.93 -0.34 0.98 16 40 H 0.03 0.54 7.38 -51.93 -0.38 0.16 16 41 H 0.02 0.51 7.52 -51.93 -0.39 0.12 16 42 H 0.02 0.51 7.49 -51.93 -0.39 0.12 16 43 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.14 2.68 5.87 -52.48 -0.31 2.37 16 45 H 0.12 1.47 6.41 -52.49 -0.34 1.13 16 LS Contribution 370.92 15.07 5.59 5.59 Total: -1.00 -31.57 370.92 -7.19 -38.76 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -6.26 Total: 3.99 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -1.27 Total: -12.78 kcal Atomic # 7 Polarization: -33.93 SS G_CDS: 0.39 Total: -33.53 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.62 Total: -17.98 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.57 -7.19 -38.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148908462.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.253 kcal (2) G-P(sol) polarization free energy of solvation -31.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds