Wall clock time and date at job start Tue Mar 31 2020 12:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34228 * 116.99546 * 2 1 4 4 O 1.20827 * 120.00227 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00151 * 180.02562 * 3 2 1 6 6 N 1.46497 * 109.47568 * 179.97438 * 5 3 2 7 7 C 1.34778 * 120.00057 * 179.97438 * 6 5 3 8 8 O 1.21543 * 119.99985 * 359.97438 * 7 6 5 9 9 C 1.47847 * 119.99734 * 179.97438 * 7 6 5 10 10 C 1.39572 * 120.14317 * 180.02562 * 9 7 6 11 11 C 1.37957 * 119.85380 * 180.02562 * 10 9 7 12 12 C 1.38361 * 120.14425 * 0.02562 * 11 10 9 13 13 C 1.50706 * 119.85111 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47103 * 299.99884 * 13 12 11 15 15 C 1.52997 * 109.47238 * 60.00077 * 13 12 11 16 16 C 1.53002 * 109.46925 * 180.02562 * 13 12 11 17 17 C 1.50696 * 109.47300 * 180.02562 * 16 13 12 18 18 H 1.07999 * 119.99822 * 0.02562 * 17 16 13 19 19 C 1.37876 * 120.00339 * 179.97438 * 17 16 13 20 20 N 1.31514 * 119.99769 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00300 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47118 * 89.99790 * 21 19 17 23 23 H 1.48499 * 109.47134 * 210.00310 * 21 19 17 24 24 H 1.48498 * 109.47011 * 329.99931 * 21 19 17 25 25 C 1.38360 * 120.29215 * 0.23233 * 12 11 10 26 26 C 1.37954 * 120.14529 * 359.49070 * 25 12 11 27 27 H 1.09002 * 109.47784 * 299.99818 * 1 2 3 28 28 H 1.09001 * 109.47321 * 60.00620 * 1 2 3 29 29 H 1.09009 * 109.46801 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47096 * 59.99238 * 5 3 2 31 31 H 1.08999 * 109.47003 * 299.99695 * 5 3 2 32 32 H 0.97005 * 119.99795 * 359.97438 * 6 5 3 33 33 H 1.08002 * 120.07619 * 359.97438 * 10 9 7 34 34 H 1.08002 * 119.92731 * 179.97438 * 11 10 9 35 35 H 1.08992 * 109.47280 * 59.99899 * 14 13 12 36 36 H 1.09002 * 109.46777 * 180.02562 * 14 13 12 37 37 H 1.09000 * 109.47140 * 300.00046 * 14 13 12 38 38 H 1.09004 * 109.47261 * 59.99705 * 15 13 12 39 39 H 1.09002 * 109.47153 * 179.97438 * 15 13 12 40 40 H 1.09001 * 109.46832 * 299.99686 * 15 13 12 41 41 H 1.09004 * 109.46930 * 299.99901 * 16 13 12 42 42 H 1.09004 * 109.47059 * 59.99503 * 16 13 12 43 43 H 0.97000 * 120.00540 * 179.97438 * 20 19 17 44 44 H 1.08004 * 119.92476 * 179.74494 * 25 12 11 45 45 H 1.07999 * 120.07349 * 180.25276 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4031 2.2093 -0.0005 5 6 3.5662 1.2751 -0.0006 6 7 3.9815 2.6799 -0.0011 7 6 5.2919 2.9953 -0.0011 8 8 6.1290 2.1141 -0.0003 9 6 5.7110 4.4131 -0.0022 10 6 7.0671 4.7431 -0.0028 11 6 7.4515 6.0680 -0.0033 12 6 6.4959 7.0687 -0.0026 13 6 6.9232 8.5139 -0.0025 14 6 7.7600 8.7983 1.2463 15 6 7.7588 8.7988 -1.2521 16 6 5.6844 9.4119 -0.0011 17 6 6.1116 10.8571 -0.0017 18 1 7.1616 11.1098 -0.0034 19 6 5.1620 11.8567 -0.0012 20 7 3.8834 11.5490 0.0004 21 14 5.6915 13.6481 -0.0026 22 1 5.8303 14.1221 -1.4030 23 1 4.6698 14.4668 0.6982 24 1 6.9953 13.7794 0.6960 25 6 5.1499 6.7484 0.0034 26 6 4.7521 5.4275 -0.0019 27 1 -0.3635 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 3.9556 0.7811 -0.8907 31 1 3.9563 0.7809 0.8892 32 1 3.3134 3.3832 -0.0014 33 1 7.8140 3.9630 -0.0020 34 1 8.5005 6.3248 -0.0033 35 1 8.6424 8.1585 1.2458 36 1 8.0686 9.8437 1.2466 37 1 7.1647 8.5954 2.1366 38 1 7.1626 8.5962 -2.1419 39 1 8.0675 9.8442 -1.2523 40 1 8.6413 8.1590 -1.2526 41 1 5.0879 9.2094 -0.8907 42 1 5.0894 9.2088 0.8893 43 1 3.2152 12.2521 0.0011 44 1 4.4091 7.5343 0.0080 45 1 3.7011 5.1788 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148908462.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:13 Heat of formation + Delta-G solvation = -126.208863 kcal Electronic energy + Delta-G solvation = -25967.098174 eV Core-core repulsion = 22141.561053 eV Total energy + Delta-G solvation = -3825.537120 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.88703 -41.20935 -40.06927 -37.83009 -37.30364 -35.78549 -34.49247 -32.14176 -31.65368 -30.02917 -29.00155 -27.90580 -27.75676 -25.86962 -24.45498 -23.07067 -22.32848 -21.76425 -20.00127 -19.66658 -18.54903 -18.32497 -17.85537 -17.57060 -17.02732 -16.61267 -16.31284 -16.05577 -15.83400 -15.57645 -15.00041 -14.92228 -14.75168 -14.54590 -14.28466 -14.17861 -13.87726 -13.80445 -13.65568 -13.50190 -13.01203 -12.93957 -12.71972 -12.66979 -12.30925 -12.27692 -12.08876 -11.91175 -11.90554 -11.82971 -11.65151 -11.19638 -10.87278 -10.79330 -10.50251 -10.44214 -9.90389 -9.62794 -8.13093 -6.19648 -0.13533 0.46462 0.92747 1.27042 1.42260 1.42784 1.52750 1.77306 2.18116 2.44665 2.90073 3.21654 3.48112 3.66851 3.85838 3.94784 4.03929 4.17613 4.25134 4.28220 4.32254 4.33382 4.42202 4.47609 4.58308 4.60812 4.70200 4.93860 4.97855 5.03410 5.05367 5.13941 5.14850 5.21057 5.31291 5.33972 5.39950 5.51087 5.54020 5.55904 5.81861 5.83261 5.91768 5.98790 6.24903 6.35256 6.47400 6.95168 6.97495 7.47664 8.98995 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017214 B = 0.002532 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.185687 B =11054.303864 C =12478.823304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.354 6.354 3 C 0.465 3.535 4 O -0.531 6.531 5 C 0.128 3.872 6 N -0.720 5.720 7 C 0.577 3.423 8 O -0.562 6.562 9 C -0.162 4.162 10 C -0.056 4.056 11 C -0.125 4.125 12 C -0.034 4.034 13 C -0.032 4.032 14 C -0.119 4.119 15 C -0.119 4.119 16 C 0.043 3.957 17 C -0.517 4.517 18 H 0.069 0.931 19 C -0.002 4.002 20 N -0.935 5.935 21 Si 0.953 3.047 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.262 1.262 25 C -0.143 4.143 26 C -0.076 4.076 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.136 0.864 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.415 0.585 33 H 0.146 0.854 34 H 0.150 0.850 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.036 0.964 38 H 0.036 0.964 39 H 0.055 0.945 40 H 0.070 0.930 41 H -0.010 1.010 42 H -0.009 1.009 43 H 0.259 0.741 44 H 0.115 0.885 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.569 -22.853 0.005 22.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.269 6.269 3 C 0.309 3.691 4 O -0.420 6.420 5 C 0.004 3.996 6 N -0.376 5.376 7 C 0.366 3.634 8 O -0.442 6.442 9 C -0.165 4.165 10 C -0.075 4.075 11 C -0.142 4.142 12 C -0.034 4.034 13 C -0.032 4.032 14 C -0.176 4.176 15 C -0.176 4.176 16 C 0.007 3.993 17 C -0.555 4.555 18 H 0.087 0.913 19 C -0.199 4.199 20 N -0.577 5.577 21 Si 0.779 3.221 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.186 1.186 25 C -0.161 4.161 26 C -0.095 4.095 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.154 0.846 30 H 0.148 0.852 31 H 0.148 0.852 32 H 0.254 0.746 33 H 0.163 0.837 34 H 0.168 0.832 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.009 0.991 42 H 0.009 0.991 43 H 0.068 0.932 44 H 0.133 0.867 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.417 -23.156 0.010 23.160 hybrid contribution -1.181 1.787 -0.013 2.142 sum -1.598 -21.369 -0.003 21.429 Atomic orbital electron populations 1.23633 0.74016 1.06080 1.02762 1.86471 1.25426 1.31598 1.83385 1.23654 0.92053 0.81800 0.71638 1.90709 1.67447 1.37274 1.46614 1.20789 0.86527 0.84270 1.08060 1.45677 1.07733 1.08424 1.75796 1.18161 0.81627 0.88540 0.75030 1.90743 1.52036 1.49999 1.51421 1.19761 0.95074 0.91678 1.10020 1.21330 0.94668 0.96683 0.94825 1.21164 1.00426 0.91311 1.01336 1.20464 0.93431 0.95979 0.93519 1.19655 0.97027 0.89615 0.96864 1.21703 0.98606 1.01779 0.95495 1.21705 0.98612 1.01803 0.95478 1.19052 0.92285 0.93596 0.94405 1.21666 0.93133 0.92071 1.48639 0.91335 1.25873 0.95021 1.03466 0.95549 1.70092 1.00994 1.33939 1.52636 0.85615 0.78216 0.80070 0.78179 1.20243 1.21517 1.18590 1.21312 0.96679 0.96550 1.01574 1.21372 0.99496 0.91827 0.96760 0.91788 0.91783 0.84634 0.85240 0.85237 0.74606 0.83650 0.83234 0.91101 0.92601 0.94436 0.94440 0.92563 0.91095 0.99145 0.99106 0.93216 0.86654 0.84310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.55 113.37 1.20 1.46 16 2 O -0.35 -4.99 10.57 -51.40 -0.54 -5.53 16 3 C 0.46 7.98 8.03 71.24 0.57 8.55 16 4 O -0.53 -12.32 15.42 21.96 0.34 -11.98 16 5 C 0.13 1.97 6.27 85.63 0.54 2.51 16 6 N -0.72 -14.93 5.48 -469.72 -2.57 -17.51 16 7 C 0.58 14.84 7.77 86.79 0.67 15.52 16 8 O -0.56 -16.62 16.35 -3.85 -0.06 -16.68 16 9 C -0.16 -4.47 5.87 -20.09 -0.12 -4.59 16 10 C -0.06 -1.51 9.60 22.53 0.22 -1.29 16 11 C -0.12 -3.47 8.69 22.23 0.19 -3.28 16 12 C -0.03 -1.15 4.77 -19.80 -0.09 -1.24 16 13 C -0.03 -1.21 0.61 -52.93 -0.03 -1.24 16 14 C -0.12 -4.14 8.03 71.98 0.58 -3.57 16 15 C -0.12 -4.14 8.03 71.98 0.58 -3.57 16 16 C 0.04 2.16 2.70 29.85 0.08 2.24 16 17 C -0.52 -27.64 7.65 25.60 0.20 -27.44 16 18 H 0.07 3.47 5.68 -2.91 -0.02 3.46 16 19 C 0.00 -0.12 5.46 84.65 0.46 0.35 16 20 N -0.94 -56.01 13.29 21.45 0.28 -55.73 16 21 Si 0.95 43.58 29.54 68.60 2.03 45.60 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 23 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 24 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 25 C -0.14 -5.05 8.96 22.23 0.20 -4.85 16 26 C -0.08 -2.20 9.54 22.53 0.21 -1.98 16 27 H 0.06 0.66 8.13 -2.39 -0.02 0.64 16 28 H 0.06 0.66 8.13 -2.39 -0.02 0.64 16 29 H 0.14 0.43 8.14 -2.38 -0.02 0.41 16 30 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.41 8.60 5.48 -92.70 -0.51 8.09 16 33 H 0.15 3.47 7.65 -2.91 -0.02 3.44 16 34 H 0.15 3.41 7.08 -2.91 -0.02 3.39 16 35 H 0.07 1.96 7.37 -2.39 -0.02 1.94 16 36 H 0.05 2.08 6.62 -2.39 -0.02 2.06 16 37 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 39 H 0.06 2.08 6.62 -2.39 -0.02 2.07 16 40 H 0.07 1.96 7.38 -2.39 -0.02 1.94 16 41 H -0.01 -0.54 7.52 -2.38 -0.02 -0.55 16 42 H -0.01 -0.51 7.49 -2.39 -0.02 -0.53 16 43 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 44 H 0.12 4.69 5.87 -2.91 -0.02 4.67 16 45 H 0.14 3.37 6.41 -2.91 -0.02 3.35 16 Total: -1.00 -69.46 370.92 5.43 -64.03 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: 0.51 Total: 20.21 kcal Atomic # 6 Polarization: -27.86 SS G_CDS: 5.45 Total: -22.41 kcal Atomic # 7 Polarization: -70.95 SS G_CDS: -2.29 Total: -73.24 kcal Atomic # 8 Polarization: -33.92 SS G_CDS: -0.27 Total: -34.19 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Total: -69.46 5.43 -64.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148908462.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.181 kcal (2) G-P(sol) polarization free energy of solvation -69.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds