Wall clock time and date at job start Tue Mar 31 2020 12:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34837 * 117.00226 * 2 1 4 4 O 1.21567 * 119.99922 * 359.97438 * 3 2 1 5 5 C 1.47010 * 120.00375 * 179.97438 * 3 2 1 6 6 C 1.39577 * 120.48371 * 354.33295 * 5 3 2 7 7 C 1.37804 * 120.13945 * 179.97438 * 6 5 3 8 8 C 1.39414 * 121.19631 * 0.02562 * 7 6 5 9 9 N 1.39152 * 119.49550 * 179.97438 * 8 7 6 10 10 C 1.46498 * 120.00130 * 0.02562 * 9 8 7 11 11 C 1.50705 * 109.46770 * 179.97438 * 10 9 8 12 12 O 1.20754 * 120.00168 * 359.97438 * 11 10 9 13 13 C 1.50705 * 119.99780 * 179.97438 * 11 10 9 14 14 C 1.52995 * 109.47067 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47063 * 300.00249 * 13 11 10 16 16 C 1.53000 * 109.46928 * 59.99921 * 13 11 10 17 17 C 1.38437 * 121.00162 * 359.73760 * 8 7 6 18 18 C 1.40507 * 119.76699 * 0.49700 * 17 8 7 19 19 C 1.40941 * 120.56345 * 179.79220 * 18 17 8 20 20 H 1.08006 * 119.99631 * 147.19720 * 19 18 17 21 21 C 1.40239 * 120.00138 * 327.47045 * 19 18 17 22 22 N 1.30638 * 120.00260 * 350.50361 * 21 19 18 23 23 Si 1.86801 * 120.00206 * 170.50565 * 21 19 18 24 24 H 1.48496 * 109.47204 * 89.99773 * 23 21 19 25 25 H 1.48500 * 109.47285 * 210.00019 * 23 21 19 26 26 H 1.48504 * 109.46855 * 330.00258 * 23 21 19 27 27 H 1.08994 * 109.47217 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47026 * 300.00206 * 1 2 3 29 29 H 1.09000 * 109.46520 * 59.99878 * 1 2 3 30 30 H 1.07999 * 119.93062 * 359.97327 * 6 5 3 31 31 H 1.07994 * 119.39731 * 180.02562 * 7 6 5 32 32 H 0.97000 * 119.99505 * 179.97438 * 9 8 7 33 33 H 1.08996 * 109.47005 * 299.99660 * 10 9 8 34 34 H 1.08996 * 109.47278 * 59.99988 * 10 9 8 35 35 H 1.09006 * 109.46931 * 60.00670 * 14 13 11 36 36 H 1.09000 * 109.46906 * 179.97438 * 14 13 11 37 37 H 1.08999 * 109.47410 * 300.00115 * 14 13 11 38 38 H 1.08993 * 109.47504 * 60.00048 * 15 13 11 39 39 H 1.09000 * 109.47289 * 179.97438 * 15 13 11 40 40 H 1.08999 * 109.46855 * 299.99394 * 15 13 11 41 41 H 1.08999 * 109.47280 * 60.00050 * 16 13 11 42 42 H 1.09001 * 109.47229 * 179.97438 * 16 13 11 43 43 H 1.09003 * 109.47446 * 299.99871 * 16 13 11 44 44 H 1.07998 * 120.11930 * 180.28742 * 17 8 7 45 45 H 0.97001 * 120.00686 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2014 0.0000 4 8 1.4021 2.2209 -0.0005 5 6 3.5323 1.2784 0.0006 6 6 4.3020 0.1201 0.1199 7 6 5.6777 0.2005 0.1191 8 6 6.3294 1.4273 0.0009 9 7 7.7203 1.4674 0.0047 10 6 8.4886 0.2265 0.1316 11 6 9.9618 0.5432 0.1079 12 8 10.3317 1.6872 -0.0040 13 6 10.9733 -0.5680 0.2239 14 6 12.3848 0.0200 0.1722 15 6 10.7743 -1.3022 1.5513 16 6 10.7875 -1.5497 -0.9348 17 6 5.6137 2.6056 -0.1251 18 6 4.2090 2.5721 -0.1241 19 6 3.4637 3.7620 -0.2469 20 1 2.5117 3.7527 -0.7569 21 6 3.9608 4.9592 0.2882 22 7 5.0167 4.9422 1.0573 23 14 3.1133 6.5783 -0.0988 24 1 2.0681 6.8461 0.9216 25 1 4.1129 7.6764 -0.0836 26 1 2.4849 6.4993 -1.4420 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 3.8184 -0.8410 0.2131 31 1 6.2616 -0.7033 0.2117 32 1 8.1812 2.3169 -0.0775 33 1 8.2367 -0.2621 1.0729 34 1 8.2466 -0.4372 -0.6984 35 1 12.5175 0.7196 0.9975 36 1 13.1164 -0.7837 0.2565 37 1 12.5263 0.5428 -0.7737 38 1 9.7688 -1.7211 1.5877 39 1 11.5056 -2.1062 1.6350 40 1 10.9067 -0.6028 2.3767 41 1 10.9292 -1.0266 -1.8806 42 1 11.5193 -2.3531 -0.8513 43 1 9.7818 -1.9686 -0.8985 44 1 6.1332 3.5476 -0.2204 45 1 5.3608 5.7703 1.4271 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164004857.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:05 Heat of formation + Delta-G solvation = -111.728416 kcal Electronic energy + Delta-G solvation = -26542.489137 eV Core-core repulsion = 22717.579936 eV Total energy + Delta-G solvation = -3824.909201 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.21719 -39.11913 -37.57602 -35.95151 -35.35415 -34.48843 -33.35982 -29.90702 -29.53579 -27.81884 -27.61372 -27.14240 -25.96767 -25.39845 -22.70005 -21.93838 -20.87208 -19.37800 -18.52589 -17.41618 -16.74726 -16.38001 -15.99444 -15.58452 -15.45729 -15.32040 -15.16654 -14.63609 -14.21560 -14.05654 -13.76050 -13.42886 -12.82560 -12.78576 -12.75007 -12.49773 -12.47676 -12.41818 -12.32025 -12.22334 -11.95528 -11.57841 -11.49338 -11.21461 -11.13754 -11.10279 -11.08890 -10.94643 -10.63377 -10.32608 -9.87686 -9.61996 -9.51206 -9.38446 -8.95768 -8.77771 -7.41455 -6.86548 -6.39273 -4.46531 1.87277 2.35727 2.85109 3.08929 3.15799 3.26502 3.63178 3.84758 3.94564 4.03705 4.29919 4.45695 4.59640 4.66754 4.71745 5.23690 5.31537 5.36515 5.44466 5.50286 5.51490 5.57568 5.60045 5.64543 5.64752 5.69129 5.73760 5.86372 5.89533 5.97695 6.01847 6.10293 6.29931 6.47140 6.77890 6.97399 7.14850 7.21864 7.37832 7.44920 7.54585 7.65737 7.83328 8.02195 8.36321 8.50636 8.67509 8.79658 8.90314 9.20344 10.10495 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012592 B = 0.003526 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.111736 B = 7939.712146 C = 9894.498188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.376 6.376 3 C 0.505 3.495 4 O -0.524 6.524 5 C -0.287 4.287 6 C 0.004 3.996 7 C -0.308 4.308 8 C 0.242 3.758 9 N -0.750 5.750 10 C 0.083 3.917 11 C 0.359 3.641 12 O -0.444 6.444 13 C -0.113 4.113 14 C -0.134 4.134 15 C -0.140 4.140 16 C -0.140 4.140 17 C -0.235 4.235 18 C 0.183 3.817 19 C -0.413 4.413 20 H 0.104 0.896 21 C 0.071 3.929 22 N -0.779 5.779 23 Si 0.917 3.083 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.258 1.258 27 H 0.086 0.914 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.401 0.599 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.121 0.879 45 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.236 -11.401 -0.782 14.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.295 6.295 3 C 0.357 3.643 4 O -0.415 6.415 5 C -0.291 4.291 6 C -0.015 4.015 7 C -0.330 4.330 8 C 0.142 3.858 9 N -0.385 5.385 10 C -0.043 4.043 11 C 0.233 3.767 12 O -0.316 6.316 13 C -0.114 4.114 14 C -0.191 4.191 15 C -0.198 4.198 16 C -0.197 4.197 17 C -0.259 4.259 18 C 0.178 3.822 19 C -0.441 4.441 20 H 0.122 0.878 21 C -0.149 4.149 22 N -0.403 5.403 23 Si 0.742 3.258 24 H -0.192 1.192 25 H -0.202 1.202 26 H -0.182 1.182 27 H 0.104 0.896 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.121 0.879 31 H 0.111 0.889 32 H 0.238 0.762 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.139 0.861 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.421 -10.529 -0.678 14.145 hybrid contribution -0.346 0.927 0.053 0.991 sum 9.075 -9.602 -0.625 13.226 Atomic orbital electron populations 1.22940 0.78928 1.01839 1.01656 1.86594 1.21280 1.35341 1.86295 1.21298 0.89589 0.80087 0.73352 1.90726 1.66922 1.35266 1.48616 1.19658 0.86593 0.95001 1.27849 1.20590 0.92896 0.95989 0.92039 1.19773 0.94000 0.94637 1.24632 1.17704 0.81300 0.94413 0.92431 1.44254 1.03486 1.07006 1.83712 1.21464 0.89382 0.90470 1.03011 1.24850 0.91906 0.89649 0.70326 1.90374 1.82712 1.23607 1.34901 1.21157 0.96027 0.95974 0.98256 1.21717 0.93744 1.00650 1.02974 1.21861 1.02956 1.00245 0.94709 1.21862 1.02971 0.98302 0.96608 1.20623 0.93370 0.95168 1.16720 1.18098 0.90581 0.89818 0.83692 1.20155 1.05125 0.90962 1.27857 0.87819 1.26141 0.94134 1.01511 0.93116 1.69752 1.19037 1.30044 1.21507 0.86149 0.79586 0.79600 0.80512 1.19227 1.20185 1.18203 0.89597 0.92891 0.92911 0.87868 0.88857 0.76245 0.89452 0.89481 0.92084 0.92014 0.92098 0.91392 0.91362 0.92091 0.92128 0.91362 0.91396 0.86107 0.90616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 10.57 101.05 1.07 1.72 16 2 O -0.38 -7.78 9.85 -40.87 -0.40 -8.19 16 3 C 0.51 12.40 7.85 34.29 0.27 12.67 16 4 O -0.52 -13.97 13.55 -19.32 -0.26 -14.23 16 5 C -0.29 -7.25 6.07 -102.50 -0.62 -7.87 16 6 C 0.00 0.09 9.60 -39.24 -0.38 -0.29 16 7 C -0.31 -6.42 9.24 -39.30 -0.36 -6.78 16 8 C 0.24 5.35 6.63 -84.03 -0.56 4.80 16 9 N -0.75 -13.97 5.68 -59.94 -0.34 -14.31 16 10 C 0.08 1.15 4.63 -5.19 -0.02 1.13 16 11 C 0.36 4.63 6.04 -29.03 -0.18 4.46 16 12 O -0.44 -7.21 15.29 6.00 0.09 -7.12 16 13 C -0.11 -1.05 0.87 -155.66 -0.14 -1.18 16 14 C -0.13 -1.23 7.76 37.16 0.29 -0.94 16 15 C -0.14 -1.09 8.26 37.16 0.31 -0.78 16 16 C -0.14 -1.06 8.25 37.16 0.31 -0.76 16 17 C -0.23 -5.93 8.46 -38.65 -0.33 -6.26 16 18 C 0.18 4.94 5.67 -104.67 -0.59 4.34 16 19 C -0.41 -11.36 7.85 -37.81 -0.30 -11.66 16 20 H 0.10 2.94 5.97 -52.48 -0.31 2.62 16 21 C 0.07 1.82 5.26 -17.31 -0.09 1.72 16 22 N -0.78 -20.12 11.06 55.56 0.61 -19.50 16 23 Si 0.92 19.56 29.57 -169.99 -5.03 14.53 16 24 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 25 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 26 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 27 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.10 2.02 7.63 -52.49 -0.40 1.62 16 31 H 0.09 1.64 6.58 -52.49 -0.35 1.29 16 32 H 0.40 7.77 7.43 -40.82 -0.30 7.47 16 33 H 0.09 1.13 7.14 -51.93 -0.37 0.76 16 34 H 0.09 1.10 7.14 -51.93 -0.37 0.73 16 35 H 0.06 0.62 8.10 -51.93 -0.42 0.19 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 38 H 0.07 0.49 7.28 -51.93 -0.38 0.12 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.48 7.28 -51.93 -0.38 0.10 16 44 H 0.12 3.17 6.50 -52.49 -0.34 2.83 16 45 H 0.28 6.65 8.29 -40.82 -0.34 6.31 16 LS Contribution 371.88 15.07 5.60 5.60 Total: -1.00 -31.10 371.88 -7.60 -38.70 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -6.56 Total: 10.19 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -1.32 Total: -5.68 kcal Atomic # 7 Polarization: -34.09 SS G_CDS: 0.27 Total: -33.82 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -0.57 Total: -29.54 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.03 Total: 14.53 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.10 -7.60 -38.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164004857.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.028 kcal (2) G-P(sol) polarization free energy of solvation -31.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds