Wall clock time and date at job start Tue Mar 31 2020 12:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34837 * 117.00226 * 2 1 4 4 O 1.21567 * 119.99922 * 359.97438 * 3 2 1 5 5 C 1.47010 * 120.00375 * 179.97438 * 3 2 1 6 6 C 1.39577 * 120.48371 * 354.33295 * 5 3 2 7 7 C 1.37804 * 120.13945 * 179.97438 * 6 5 3 8 8 C 1.39414 * 121.19631 * 0.02562 * 7 6 5 9 9 N 1.39152 * 119.49550 * 179.97438 * 8 7 6 10 10 C 1.46498 * 120.00130 * 0.02562 * 9 8 7 11 11 C 1.50705 * 109.46770 * 179.97438 * 10 9 8 12 12 O 1.20754 * 120.00168 * 359.97438 * 11 10 9 13 13 C 1.50705 * 119.99780 * 179.97438 * 11 10 9 14 14 C 1.52995 * 109.47067 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47063 * 300.00249 * 13 11 10 16 16 C 1.53000 * 109.46928 * 59.99921 * 13 11 10 17 17 C 1.38437 * 121.00162 * 359.73760 * 8 7 6 18 18 C 1.40507 * 119.76699 * 0.49700 * 17 8 7 19 19 C 1.40941 * 120.56345 * 179.79220 * 18 17 8 20 20 H 1.08006 * 119.99631 * 147.19720 * 19 18 17 21 21 C 1.40239 * 120.00138 * 327.47045 * 19 18 17 22 22 N 1.30638 * 120.00260 * 350.50361 * 21 19 18 23 23 Si 1.86801 * 120.00206 * 170.50565 * 21 19 18 24 24 H 1.48496 * 109.47204 * 89.99773 * 23 21 19 25 25 H 1.48500 * 109.47285 * 210.00019 * 23 21 19 26 26 H 1.48504 * 109.46855 * 330.00258 * 23 21 19 27 27 H 1.08994 * 109.47217 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47026 * 300.00206 * 1 2 3 29 29 H 1.09000 * 109.46520 * 59.99878 * 1 2 3 30 30 H 1.07999 * 119.93062 * 359.97327 * 6 5 3 31 31 H 1.07994 * 119.39731 * 180.02562 * 7 6 5 32 32 H 0.97000 * 119.99505 * 179.97438 * 9 8 7 33 33 H 1.08996 * 109.47005 * 299.99660 * 10 9 8 34 34 H 1.08996 * 109.47278 * 59.99988 * 10 9 8 35 35 H 1.09006 * 109.46931 * 60.00670 * 14 13 11 36 36 H 1.09000 * 109.46906 * 179.97438 * 14 13 11 37 37 H 1.08999 * 109.47410 * 300.00115 * 14 13 11 38 38 H 1.08993 * 109.47504 * 60.00048 * 15 13 11 39 39 H 1.09000 * 109.47289 * 179.97438 * 15 13 11 40 40 H 1.08999 * 109.46855 * 299.99394 * 15 13 11 41 41 H 1.08999 * 109.47280 * 60.00050 * 16 13 11 42 42 H 1.09001 * 109.47229 * 179.97438 * 16 13 11 43 43 H 1.09003 * 109.47446 * 299.99871 * 16 13 11 44 44 H 1.07998 * 120.11930 * 180.28742 * 17 8 7 45 45 H 0.97001 * 120.00686 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2014 0.0000 4 8 1.4021 2.2209 -0.0005 5 6 3.5323 1.2784 0.0006 6 6 4.3020 0.1201 0.1199 7 6 5.6777 0.2005 0.1191 8 6 6.3294 1.4273 0.0009 9 7 7.7203 1.4674 0.0047 10 6 8.4886 0.2265 0.1316 11 6 9.9618 0.5432 0.1079 12 8 10.3317 1.6872 -0.0040 13 6 10.9733 -0.5680 0.2239 14 6 12.3848 0.0200 0.1722 15 6 10.7743 -1.3022 1.5513 16 6 10.7875 -1.5497 -0.9348 17 6 5.6137 2.6056 -0.1251 18 6 4.2090 2.5721 -0.1241 19 6 3.4637 3.7620 -0.2469 20 1 2.5117 3.7527 -0.7569 21 6 3.9608 4.9592 0.2882 22 7 5.0167 4.9422 1.0573 23 14 3.1133 6.5783 -0.0988 24 1 2.0681 6.8461 0.9216 25 1 4.1129 7.6764 -0.0836 26 1 2.4849 6.4993 -1.4420 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 3.8184 -0.8410 0.2131 31 1 6.2616 -0.7033 0.2117 32 1 8.1812 2.3169 -0.0775 33 1 8.2367 -0.2621 1.0729 34 1 8.2466 -0.4372 -0.6984 35 1 12.5175 0.7196 0.9975 36 1 13.1164 -0.7837 0.2565 37 1 12.5263 0.5428 -0.7737 38 1 9.7688 -1.7211 1.5877 39 1 11.5056 -2.1062 1.6350 40 1 10.9067 -0.6028 2.3767 41 1 10.9292 -1.0266 -1.8806 42 1 11.5193 -2.3531 -0.8513 43 1 9.7818 -1.9686 -0.8985 44 1 6.1332 3.5476 -0.2204 45 1 5.3608 5.7703 1.4271 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164004857.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:04 Heat of formation + Delta-G solvation = -129.836137 kcal Electronic energy + Delta-G solvation = -26543.274347 eV Core-core repulsion = 22717.579936 eV Total energy + Delta-G solvation = -3825.694411 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.28645 -40.88980 -39.27138 -37.10061 -36.77217 -36.22658 -35.12457 -31.60860 -31.20674 -29.11395 -28.18352 -28.17749 -27.27526 -27.16254 -23.91396 -23.58984 -22.54884 -21.12582 -19.55669 -19.22038 -18.33972 -17.90684 -17.41407 -16.98559 -16.96028 -16.81331 -16.49852 -16.15997 -15.29307 -15.12208 -15.07908 -14.68690 -14.46339 -14.35550 -14.14030 -13.95307 -13.88822 -13.37131 -13.24951 -13.05232 -13.03521 -12.95190 -12.85033 -12.76130 -12.66612 -12.56870 -12.44400 -12.07570 -11.88236 -11.79288 -11.51183 -11.41778 -11.22811 -10.72364 -10.58765 -10.52461 -9.29704 -8.73950 -8.08870 -6.44810 0.50360 0.86371 1.06612 1.32569 1.46233 1.52388 2.16779 2.18612 2.23246 2.47218 2.77499 3.02097 3.70155 3.71251 3.92274 3.98768 4.33813 4.42785 4.43214 4.45570 4.46400 4.48079 4.54275 4.70670 4.72866 4.76607 4.83166 4.87750 4.97225 4.98225 5.03140 5.06089 5.12991 5.23993 5.26716 5.36071 5.39139 5.41902 5.66322 5.75627 5.89088 6.05679 6.09049 6.39295 6.50555 6.78729 6.84185 6.86671 7.04188 7.37350 8.24615 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012592 B = 0.003526 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.111736 B = 7939.712146 C = 9894.498188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.372 6.372 3 C 0.504 3.496 4 O -0.557 6.557 5 C -0.320 4.320 6 C 0.010 3.990 7 C -0.297 4.297 8 C 0.254 3.746 9 N -0.749 5.749 10 C 0.072 3.928 11 C 0.362 3.638 12 O -0.486 6.486 13 C -0.106 4.106 14 C -0.134 4.134 15 C -0.140 4.140 16 C -0.140 4.140 17 C -0.266 4.266 18 C 0.158 3.842 19 C -0.455 4.455 20 H 0.083 0.917 21 C 0.034 3.966 22 N -0.809 5.809 23 Si 0.980 3.020 24 H -0.267 1.267 25 H -0.258 1.258 26 H -0.261 1.261 27 H 0.135 0.865 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.135 0.865 31 H 0.139 0.861 32 H 0.395 0.605 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.045 0.955 36 H 0.087 0.913 37 H 0.046 0.954 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.049 0.951 41 H 0.051 0.949 42 H 0.090 0.910 43 H 0.078 0.922 44 H 0.099 0.901 45 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.247 -14.732 -0.571 17.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.290 6.290 3 C 0.356 3.644 4 O -0.452 6.452 5 C -0.324 4.324 6 C -0.009 4.009 7 C -0.318 4.318 8 C 0.150 3.850 9 N -0.380 5.380 10 C -0.052 4.052 11 C 0.239 3.761 12 O -0.361 6.361 13 C -0.107 4.107 14 C -0.191 4.191 15 C -0.197 4.197 16 C -0.197 4.197 17 C -0.291 4.291 18 C 0.153 3.847 19 C -0.483 4.483 20 H 0.101 0.899 21 C -0.183 4.183 22 N -0.434 5.434 23 Si 0.801 3.199 24 H -0.192 1.192 25 H -0.181 1.181 26 H -0.185 1.185 27 H 0.153 0.847 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.152 0.848 31 H 0.157 0.843 32 H 0.230 0.770 33 H 0.126 0.874 34 H 0.130 0.870 35 H 0.064 0.936 36 H 0.106 0.894 37 H 0.066 0.934 38 H 0.096 0.904 39 H 0.109 0.891 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.109 0.891 43 H 0.097 0.903 44 H 0.117 0.883 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 10.470 -13.921 -0.465 17.426 hybrid contribution -0.583 1.714 -0.005 1.810 sum 9.888 -12.208 -0.470 15.717 Atomic orbital electron populations 1.23357 0.76136 1.05003 1.01544 1.86537 1.23926 1.32966 1.85606 1.21319 0.89675 0.80658 0.72701 1.90700 1.67632 1.36650 1.50176 1.19962 0.87649 0.95574 1.29185 1.20928 0.93362 0.96128 0.90518 1.20210 0.93945 0.95468 1.22218 1.17824 0.82815 0.94009 0.90328 1.44427 1.02527 1.08774 1.82299 1.21885 0.89696 0.88696 1.04955 1.25340 0.92131 0.90053 0.68620 1.90380 1.83121 1.25501 1.37085 1.21178 0.94439 0.94946 1.00131 1.21738 0.94595 1.01153 1.01628 1.21908 1.04372 1.00425 0.93025 1.21907 1.04407 0.98208 0.95141 1.20494 0.93211 0.95752 1.19620 1.18455 0.91547 0.90741 0.83923 1.20156 1.05073 0.92763 1.30331 0.89947 1.26837 0.94765 1.04108 0.92545 1.69787 1.20188 1.31075 1.22342 0.85240 0.78791 0.76062 0.79832 1.19198 1.18143 1.18537 0.84698 0.93155 0.93037 0.84772 0.84348 0.77024 0.87375 0.86996 0.93602 0.89381 0.93449 0.90386 0.89051 0.93170 0.92991 0.89094 0.90338 0.88303 0.89970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.00 10.57 113.37 1.20 2.20 16 2 O -0.37 -14.96 9.85 -57.49 -0.57 -15.53 16 3 C 0.50 25.16 7.85 70.12 0.55 25.71 16 4 O -0.56 -30.95 13.55 19.62 0.27 -30.68 16 5 C -0.32 -16.38 6.07 -18.49 -0.11 -16.49 16 6 C 0.01 0.40 9.60 22.49 0.22 0.62 16 7 C -0.30 -11.50 9.24 22.45 0.21 -11.29 16 8 C 0.25 11.06 6.63 38.31 0.25 11.32 16 9 N -0.75 -27.22 5.68 -343.56 -1.95 -29.17 16 10 C 0.07 1.80 4.63 85.64 0.40 2.19 16 11 C 0.36 8.74 6.04 29.10 0.18 8.92 16 12 O -0.49 -15.81 15.29 -1.43 -0.02 -15.84 16 13 C -0.11 -1.67 0.87 -52.93 -0.05 -1.71 16 14 C -0.13 -2.22 7.76 71.98 0.56 -1.66 16 15 C -0.14 -1.66 8.26 71.98 0.59 -1.07 16 16 C -0.14 -1.59 8.25 71.98 0.59 -0.99 16 17 C -0.27 -14.00 8.46 22.87 0.19 -13.81 16 18 C 0.16 8.90 5.67 -19.90 -0.11 8.79 16 19 C -0.45 -26.58 7.85 23.42 0.18 -26.39 16 20 H 0.08 5.02 5.97 -2.91 -0.02 5.00 16 21 C 0.03 1.83 5.26 85.36 0.45 2.28 16 22 N -0.81 -43.84 11.06 21.87 0.24 -43.60 16 23 Si 0.98 41.89 29.57 68.60 2.03 43.92 16 24 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 25 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 26 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 27 H 0.13 2.75 8.14 -2.39 -0.02 2.73 16 28 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.13 4.77 7.63 -2.91 -0.02 4.74 16 31 H 0.14 4.09 6.58 -2.91 -0.02 4.08 16 32 H 0.39 15.55 7.43 -92.71 -0.69 14.87 16 33 H 0.11 2.34 7.14 -2.39 -0.02 2.32 16 34 H 0.11 2.33 7.14 -2.39 -0.02 2.31 16 35 H 0.04 0.89 8.10 -2.38 -0.02 0.87 16 36 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.05 0.90 8.10 -2.39 -0.02 0.88 16 38 H 0.08 0.78 7.28 -2.39 -0.02 0.76 16 39 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.08 0.74 7.28 -2.39 -0.02 0.72 16 44 H 0.10 5.53 6.50 -2.91 -0.02 5.51 16 45 H 0.29 14.20 8.29 -92.71 -0.77 13.43 16 Total: -1.00 -73.28 371.88 5.62 -67.66 By element: Atomic # 1 Polarization: 34.29 SS G_CDS: 0.32 Total: 34.62 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: 5.30 Total: -11.39 kcal Atomic # 7 Polarization: -71.06 SS G_CDS: -1.71 Total: -72.77 kcal Atomic # 8 Polarization: -61.72 SS G_CDS: -0.32 Total: -62.04 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -73.28 5.62 -67.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164004857.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.176 kcal (2) G-P(sol) polarization free energy of solvation -73.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds